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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IDUA is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
27.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
4.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IDUA is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.4
Number of samples
231
Samples
Sample
Description
TPM
DO45305
0 years, male, NA, stage:4, alive, 300 days
64.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
43.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
39.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
38.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
38.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
37.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
35.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
34.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
33.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
33.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
31.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
27.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
27.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
25.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
24.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
24.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
23.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
22.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
21.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
2.2
1025
Tumor
1.9
477
Tumor
1.8
425
Tumor
1.7
823
Tumor
1.6
911
Tumor
1.6
1043
Tumor
1.6
553
Tumor
1.5
221
Tumor
1.5
271
Tumor
1.4
745
Tumor
1.4
641
Tumor
1.4
131
Tumor
1.3
975
Tumor
1.3
141
Tumor
1.3
443
Tumor
1.3
1041
Tumor
1.2
755
Tumor
1.2
517
Tumor
1.1
813
Tumor
1.1
713
Tumor
1.0
877
Tumor
1.0
715
Tumor
1.0
297
Tumor
1.0
1031
Tumor
1.0
261
Tumor
0.9
817
Tumor
0.8
977
Tumor
0.8
921
Tumor
0.8
433
Tumor
0.8
395
Tumor
0.8
393
Tumor
0.7
737
Tumor
0.7
355
Tumor
0.7
481
Tumor
0.6
814
Normal
0.6
447
Tumor
0.6
471
Tumor
0.6
353
Tumor
0.6
635
Tumor
0.6
231
Tumor
0.6
473
Tumor
0.6
467
Tumor
0.6
545
Tumor
0.6
721
Tumor
0.5
487
Tumor
0.5
435
Tumor
0.5
431
Tumor
0.5
331
Tumor
0.5
863
Tumor
0.5
223
Tumor
0.5
523
Tumor
0.5
647
Tumor
0.5
777
Tumor
0.5
332
Normal
0.5
213
Tumor
0.4
1022
Normal
0.4
881
Tumor
0.4
915
Tumor
0.4
257
Tumor
0.4
445
Tumor
0.4
455
Tumor
0.4
112
Tumor
0.4
917
Tumor
0.4
383
Tumor
0.4
376
Normal
0.4
137
Tumor
0.4
867
Tumor
0.4
697
Tumor
0.4
444
Normal
0.4
191
Tumor
0.3
147
Tumor
0.3
171
Tumor
0.3
421
Tumor
0.3
727
Tumor
0.3
363
Tumor
0.3
515
Tumor
0.3
314
Normal
0.3
672
Normal
0.3
482
Normal
0.3
925
Tumor
0.3
283
Tumor
0.3
161
Tumor
0.3
361
Tumor
0.3
192
Normal
0.3
426
Normal
0.3
414
Normal
0.3
285
Tumor
0.3
963
Tumor
0.3
218
Normal
0.3
873
Tumor
0.3
362
Normal
0.3
384
Normal
0.3
913
Tumor
0.3
557
Tumor
0.2
352
Normal
0.2
434
Normal
0.2
1021
Tumor
0.2
567
Tumor
0.2
366
Normal
0.2
211
Tumor
0.2
354
Normal
0.2
135
Tumor
0.2
222
Normal
0.2
696
Normal
0.2
185
Tumor
0.2
298
Normal
0.2
341
Tumor
0.2
1044
Normal
0.2
778
Normal
0.2
187
Tumor
0.2
744
Normal
0.2
756
Normal
0.2
146
Normal
0.2
415
Tumor
0.2
468
Normal
0.2
446
Normal
0.2
432
Normal
0.2
695
Tumor
0.2
1028
Normal
0.1
394
Normal
0.1
312
Normal
0.1
636
Normal
0.1
412
Normal
0.1
224
Normal
0.1
558
Normal
0.1
568
Normal
0.1
461
Tumor
0.1
528
Normal
0.1
628
Normal
0.1
195
Tumor
0.1
686
Normal
0.1
375
Tumor
0.1
538
Normal
0.1
132
Normal
0.1
527
Tumor
0.1
861
Tumor
0.1
944
Normal
0.1
311
Tumor
0.1
572
Normal
0.1
648
Normal
0.1
958
Normal
0.1
268
Normal
0.1
388
Normal
0.1
356
Normal
0.1
277
Tumor
0.1
666
Normal
0.1
186
Normal
0.1
217
Tumor
0.1
484
Normal
0.1
664
Normal
0.1
884
Normal
0.1
344
Normal
0.1
937
Tumor
0.1
524
Normal
0.1
364
Normal
0.1
938
Normal
0.1
951
Tumor
0.1
1042
Normal
0.1
874
Normal
0.1
716
Normal
0.1
188
Normal
0.0
968
Normal
0.0
742
Normal
0.0
416
Normal
0.0
916
Normal
0.0
212
Normal
0.0
852
Normal
0.0
573
Tumor
0.0
424
Normal
0.0
671
Tumor
0.0
368
Normal
0.0
924
Normal
0.0
965
Tumor
0.0
526
Normal
0.0
923
Tumor
0.0
514
Normal
0.0
497
Tumor
0.0
943
Tumor
0.0
574
Normal
0.0
1015
Tumor
0.0
422
Normal
0.0
738
Normal
0.0
148
Normal
0.0
162
Normal
0.0
392
Normal
0.0
136
Normal
0.0
984
Normal
0.0
862
Normal
0.0
883
Tumor
0.0
723
Tumor
0.0
818
Normal
0.0
493
Tumor
0.0
714
Normal
0.0
483
Tumor
0.0
516
Normal
0.0
534
Normal
0.0
396
Normal
0.0
785
Tumor
-0.1
864
Normal
-0.1
448
Normal
-0.1
816
Normal
-0.1
857
Tumor
-0.1
365
Tumor
-0.1
554
Normal
-0.1
976
Normal
-0.1
172
Normal
-0.1
272
Normal
-0.1
492
Normal
-0.1
196
Normal
-0.1
127
Tumor
-0.1
952
Normal
-0.1
662
Normal
-0.1
957
Tumor
-0.1
214
Normal
-0.1
536
Normal
-0.1
1032
Normal
-0.1
386
Normal
-0.1
278
Normal
-0.1
728
Normal
-0.1
286
Normal
-0.1
618
Normal
-0.1
858
Normal
-0.1
462
Normal
-0.1
786
Normal
-0.1
385
Tumor
-0.1
746
Normal
-0.1
964
Normal
-0.1
456
Normal
-0.1
1027
Tumor
-0.1
342
Normal
-0.1
1016
Normal
-0.1
478
Normal
-0.1
954
Normal
-0.1
466
Normal
-0.1
145
Tumor
-0.1
142
Normal
-0.1
428
Normal
-0.1
546
Normal
-0.1
228
Normal
-0.1
912
Normal
-0.1
343
Tumor
-0.1
722
Normal
-0.1
138
Normal
-0.1
464
Normal
-0.1
914
Normal
-0.1
1014
Normal
-0.2
615
Tumor
-0.2
452
Normal
-0.2
474
Normal
-0.2
387
Tumor
-0.2
563
Tumor
-0.2
966
Normal
-0.2
978
Normal
-0.2
866
Normal
-0.2
518
Normal
-0.2
1026
Normal
-0.2
232
Normal
-0.2
642
Normal
-0.2
125
Tumor
-0.2
815
Tumor
-0.2
564
Normal
-0.2
494
Normal
-0.2
358
Normal
-0.2
982
Normal
-0.2
741
Tumor
-0.2
665
Tumor
-0.2
284
Normal
-0.2
367
Tumor
-0.2
126
Normal
-0.2
472
Normal
-0.2
436
Normal
-0.2
616
Normal
-0.2
918
Normal
-0.2
498
Normal
-0.2
267
Tumor
-0.2
1046
Normal
-0.2
824
Normal
-0.2
617
Tumor
-0.3
128
Normal
-0.3
258
Normal
-0.3
865
Tumor
-0.3
698
Normal
-0.3
955
Tumor
-0.3
1045
Tumor
-0.3
882
Normal
-0.3
262
Normal
-0.3
956
Normal
-0.3
525
Tumor
-0.3
423
Tumor
-0.3
868
Normal
-0.3
535
Tumor
-0.3
926
Normal
-0.3
878
Normal
-0.3
571
Tumor
-0.3
685
Tumor
-0.3
111
Normal
-0.3
427
Tumor
-0.3
491
Tumor
-0.4
124
Normal
-0.4
663
Tumor
-0.4
983
Tumor
-0.4
114
Normal
-0.5
463
Tumor
-0.5
488
Normal
-0.5
328
Normal
-0.5
227
Tumor
-0.5
922
Normal
-0.5
724
Normal
-0.5
123
Tumor
-0.6
351
Tumor
-0.6
627
Tumor
-0.6
411
Tumor
-0.6
533
Tumor
-0.6
981
Tumor
-0.6
513
Tumor
-0.6
413
Tumor
-0.6
391
Tumor
-0.6
661
Tumor
-0.7
113
Tumor
-0.7
451
Tumor
-0.7
465
Tumor
-0.8
953
Tumor
-0.8
313
Tumor
-0.8
537
Tumor
-0.8
357
Tumor
-0.8
851
Tumor
-0.9
1013
Tumor
-1.1
327
Tumor
-1.1
967
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
