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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TSPAN8 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
85.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
827.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
715.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
678.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
628.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
541.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
495.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
402.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
395.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
371.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
359.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
358.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
317.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
313.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
312.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
306.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
300.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
291.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
288.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
262.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
259.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
252.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
246.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
241.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
237.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
236.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
236.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
233.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
223.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
223.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
223.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
215.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
214.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
214.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
212.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
212.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
211.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
196.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
196.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
193.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
191.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
190.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
189.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
189.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
189.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
189.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
186.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
184.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
182.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
181.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
179.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
178.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
178.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
177.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
173.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
172.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
169.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
169.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
161.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
156.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
151.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
151.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
149.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
149.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
146.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
145.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
142.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
141.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
139.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
139.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
138.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
137.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
135.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
135.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
134.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
134.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
133.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
131.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
131.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
129.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
128.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
127.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
127.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
123.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
121.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
121.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
121.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
121.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
121.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
120.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
119.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
117.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
116.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
116.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
115.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
114.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
114.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
113.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
113.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
112.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
112.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
111.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
107.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
106.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
104.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
104.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
104.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
103.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
103.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
102.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
102.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
101.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
99.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
98.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
98.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
97.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
96.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
95.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
94.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
92.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
91.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
91.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
91.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
90.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
89.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
89.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
89.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
89.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
88.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
87.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
87.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
87.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
86.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
86.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
85.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
84.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
84.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
84.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
83.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
83.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
82.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
80.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
79.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
78.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
78.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
77.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
77.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
77.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
76.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
75.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
73.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
72.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
71.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
70.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
69.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
66.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
66.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
66.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
64.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
62.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
62.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
60.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
59.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
59.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
58.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
57.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
55.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
55.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
54.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
53.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
53.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
52.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
52.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
52.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
51.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
51.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
50.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
50.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
49.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
49.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
49.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
48.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
48.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
48.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
47.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
47.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
47.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
46.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
46.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
46.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
46.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
45.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
43.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
43.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
42.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
42.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
42.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
41.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
41.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
41.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
40.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
39.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
39.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
38.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
38.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
37.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
37.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
35.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
35.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
34.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
33.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
33.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
32.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
32.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
32.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
31.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
31.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
31.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
30.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
30.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
30.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
29.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
28.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
28.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
28.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
28.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
27.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
27.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
27.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
26.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
26.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
25.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
24.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
24.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
23.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
23.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
23.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
21.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
20.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
20.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
19.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
2.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TSPAN8 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
124.0
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4847.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1726.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1280.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
1016.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
901.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
705.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
700.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
450.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
333.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
323.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
320.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
314.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
305.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
302.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
300.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
298.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
295.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
295.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
290.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
288.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
285.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
280.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
278.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
273.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
258.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
234.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
229.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
221.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
214.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
212.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
194.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
193.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
191.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
185.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
183.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
177.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
168.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
165.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
165.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
163.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
162.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
153.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
152.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
151.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
150.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
148.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
148.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
147.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
144.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
141.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
140.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
134.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
128.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
123.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
121.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
118.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
116.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
114.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
112.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
112.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
111.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
109.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
105.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
104.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
101.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
101.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
101.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
99.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
96.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
92.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
92.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
91.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
87.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
86.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
85.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
85.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
84.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
84.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
83.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
83.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
83.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
82.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
81.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
79.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
79.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
79.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
79.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
78.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
75.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
75.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
74.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
71.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
70.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
70.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
69.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
68.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
66.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
64.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
64.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
63.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
63.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
60.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
58.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
58.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
58.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
56.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
56.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
55.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
53.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
52.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
52.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
51.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
51.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
51.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
50.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
49.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
49.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
48.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
48.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
47.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
46.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
45.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
45.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
45.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
43.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
43.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
42.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
40.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
39.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
38.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
38.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
38.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
38.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
37.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
35.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
35.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
35.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
35.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
34.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
34.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
32.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
32.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
32.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
32.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
32.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
32.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
32.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
31.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
29.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
28.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
27.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
25.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
24.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
24.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
23.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
19.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
3.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
2.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
1.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
917
Tumor
2.5
395
Tumor
2.4
285
Tumor
2.3
865
Tumor
2.2
471
Tumor
2.1
413
Tumor
2.0
147
Tumor
1.8
921
Tumor
1.8
533
Tumor
1.7
527
Tumor
1.7
1025
Tumor
1.6
863
Tumor
1.6
975
Tumor
1.5
493
Tumor
1.5
137
Tumor
1.4
737
Tumor
1.4
473
Tumor
1.4
617
Tumor
1.3
857
Tumor
1.3
497
Tumor
1.2
713
Tumor
1.1
881
Tumor
1.1
145
Tumor
1.1
967
Tumor
1.0
461
Tumor
1.0
221
Tumor
1.0
223
Tumor
1.0
823
Tumor
0.9
958
Normal
0.9
113
Tumor
0.8
925
Tumor
0.8
525
Tumor
0.8
427
Tumor
0.7
697
Tumor
0.7
873
Tumor
0.7
915
Tumor
0.7
271
Tumor
0.7
745
Tumor
0.7
517
Tumor
0.7
864
Normal
0.6
851
Tumor
0.6
443
Tumor
0.6
171
Tumor
0.6
128
Normal
0.6
852
Normal
0.6
445
Tumor
0.6
777
Tumor
0.6
515
Tumor
0.6
1013
Tumor
0.6
755
Tumor
0.6
131
Tumor
0.5
123
Tumor
0.5
483
Tumor
0.5
557
Tumor
0.5
191
Tumor
0.5
383
Tumor
0.4
567
Tumor
0.4
433
Tumor
0.4
277
Tumor
0.4
127
Tumor
0.4
954
Normal
0.4
913
Tumor
0.4
663
Tumor
0.3
516
Normal
0.3
467
Tumor
0.3
311
Tumor
0.3
464
Normal
0.3
463
Tumor
0.3
422
Normal
0.3
636
Normal
0.3
492
Normal
0.3
342
Normal
0.3
421
Tumor
0.2
428
Normal
0.2
412
Normal
0.2
212
Normal
0.2
186
Normal
0.2
956
Normal
0.2
862
Normal
0.2
938
Normal
0.2
574
Normal
0.2
284
Normal
0.2
866
Normal
0.2
353
Tumor
0.2
1041
Tumor
0.1
267
Tumor
0.1
672
Normal
0.1
462
Normal
0.1
618
Normal
0.1
487
Tumor
0.1
358
Normal
0.1
1042
Normal
0.1
393
Tumor
0.1
926
Normal
0.1
877
Tumor
0.1
665
Tumor
0.1
916
Normal
0.1
414
Normal
0.1
756
Normal
0.1
472
Normal
0.0
568
Normal
0.0
686
Normal
0.0
918
Normal
0.0
132
Normal
0.0
724
Normal
0.0
283
Tumor
0.0
518
Normal
0.0
356
Normal
0.0
964
Normal
0.0
484
Normal
0.0
526
Normal
0.0
188
Normal
0.0
1021
Tumor
0.0
363
Tumor
0.0
431
Tumor
0.0
662
Normal
0.0
161
Tumor
0.0
361
Tumor
-0.1
466
Normal
-0.1
448
Normal
-0.1
452
Normal
-0.1
388
Normal
-0.1
922
Normal
-0.1
196
Normal
-0.1
1043
Tumor
-0.1
868
Normal
-0.1
416
Normal
-0.1
1032
Normal
-0.1
148
Normal
-0.2
981
Tumor
-0.2
312
Normal
-0.2
494
Normal
-0.2
716
Normal
-0.2
331
Tumor
-0.2
362
Normal
-0.2
394
Normal
-0.2
858
Normal
-0.2
396
Normal
-0.2
436
Normal
-0.2
976
Normal
-0.2
883
Tumor
-0.2
478
Normal
-0.2
446
Normal
-0.2
262
Normal
-0.2
966
Normal
-0.2
965
Tumor
-0.2
983
Tumor
-0.2
424
Normal
-0.2
474
Normal
-0.2
664
Normal
-0.2
1022
Normal
-0.2
135
Tumor
-0.2
227
Tumor
-0.3
468
Normal
-0.3
124
Normal
-0.3
185
Tumor
-0.3
924
Normal
-0.3
696
Normal
-0.3
364
Normal
-0.3
963
Tumor
-0.3
435
Tumor
-0.3
111
Normal
-0.3
742
Normal
-0.3
126
Normal
-0.3
286
Normal
-0.3
982
Normal
-0.3
545
Tumor
-0.3
228
Normal
-0.3
136
Normal
-0.3
572
Normal
-0.4
354
Normal
-0.4
666
Normal
-0.4
648
Normal
-0.4
114
Normal
-0.4
341
Tumor
-0.4
142
Normal
-0.4
882
Normal
-0.4
884
Normal
-0.4
1016
Normal
-0.4
914
Normal
-0.4
878
Normal
-0.4
538
Normal
-0.4
432
Normal
-0.4
444
Normal
-0.5
482
Normal
-0.5
355
Tumor
-0.5
268
Normal
-0.5
874
Normal
-0.5
258
Normal
-0.5
1026
Normal
-0.5
224
Normal
-0.5
1046
Normal
-0.5
488
Normal
-0.5
376
Normal
-0.5
786
Normal
-0.5
984
Normal
-0.6
298
Normal
-0.6
272
Normal
-0.6
426
Normal
-0.6
564
Normal
-0.6
138
Normal
-0.6
162
Normal
-0.6
332
Normal
-0.6
278
Normal
-0.6
955
Tumor
-0.6
628
Normal
-0.6
146
Normal
-0.6
524
Normal
-0.6
923
Tumor
-0.6
514
Normal
-0.6
944
Normal
-0.6
627
Tumor
-0.6
912
Normal
-0.7
314
Normal
-0.7
558
Normal
-0.7
392
Normal
-0.7
824
Normal
-0.7
366
Normal
-0.7
721
Tumor
-0.7
384
Normal
-0.7
213
Tumor
-0.7
785
Tumor
-0.7
415
Tumor
-0.7
937
Tumor
-0.7
411
Tumor
-0.8
195
Tumor
-0.8
456
Normal
-0.8
778
Normal
-0.8
642
Normal
-0.8
698
Normal
-0.8
352
Normal
-0.8
534
Normal
-0.8
977
Tumor
-0.8
723
Tumor
-0.8
738
Normal
-0.8
498
Normal
-0.8
813
Tumor
-0.8
671
Tumor
-0.8
546
Normal
-0.8
217
Tumor
-0.9
641
Tumor
-0.9
222
Normal
-0.9
172
Normal
-0.9
386
Normal
-0.9
957
Tumor
-0.9
187
Tumor
-0.9
434
Normal
-0.9
528
Normal
-0.9
375
Tumor
-0.9
647
Tumor
-0.9
814
Normal
-0.9
818
Normal
-0.9
423
Tumor
-0.9
1014
Normal
-1.0
368
Normal
-1.0
746
Normal
-1.0
952
Normal
-1.0
728
Normal
-1.0
297
Tumor
-1.0
112
Tumor
-1.0
978
Normal
-1.0
232
Normal
-1.0
192
Normal
-1.1
218
Normal
-1.1
387
Tumor
-1.1
715
Tumor
-1.1
328
Normal
-1.1
911
Tumor
-1.2
535
Tumor
-1.2
537
Tumor
-1.2
214
Normal
-1.2
351
Tumor
-1.2
141
Tumor
-1.2
477
Tumor
-1.3
1044
Normal
-1.3
391
Tumor
-1.3
491
Tumor
-1.3
1031
Tumor
-1.3
536
Normal
-1.3
1028
Normal
-1.3
563
Tumor
-1.3
722
Normal
-1.3
261
Tumor
-1.3
816
Normal
-1.4
447
Tumor
-1.5
968
Normal
-1.5
714
Normal
-1.5
425
Tumor
-1.5
231
Tumor
-1.5
1015
Tumor
-1.6
635
Tumor
-1.6
313
Tumor
-1.6
257
Tumor
-1.6
943
Tumor
-1.7
571
Tumor
-1.8
367
Tumor
-1.9
465
Tumor
-1.9
344
Normal
-1.9
554
Normal
-2.0
455
Tumor
-2.1
616
Normal
-2.1
357
Tumor
-2.1
573
Tumor
-2.1
744
Normal
-2.3
727
Tumor
-2.3
513
Tumor
-2.4
481
Tumor
-2.4
861
Tumor
-2.4
211
Tumor
-2.5
343
Tumor
-2.5
385
Tumor
-2.5
951
Tumor
-2.6
1045
Tumor
-2.7
685
Tumor
-2.7
815
Tumor
-2.7
523
Tumor
-2.9
365
Tumor
-2.9
553
Tumor
-3.0
125
Tumor
-3.0
661
Tumor
-3.0
615
Tumor
-3.1
451
Tumor
-3.1
741
Tumor
-3.2
953
Tumor
-3.2
817
Tumor
-3.3
1027
Tumor
-3.3
695
Tumor
-3.5
743
Tumor
-3.6
327
Tumor
-3.6
867
Tumor
-4.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.