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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MASP1 is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
119.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
112.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
101.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
90.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
81.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
80.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
78.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
77.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
76.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
76.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
72.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
70.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
68.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
67.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
64.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
63.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
61.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
61.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
60.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
60.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
60.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
59.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
59.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
56.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
53.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
52.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
52.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
52.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
52.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
51.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
51.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
50.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
50.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
50.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
49.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
49.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
48.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
46.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
45.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
45.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
44.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
44.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
44.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
44.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
43.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
42.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
42.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
42.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
41.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
40.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
39.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
39.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
39.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
38.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
38.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
38.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
37.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
36.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
36.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
36.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
36.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
36.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
35.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
35.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
35.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
35.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
35.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
35.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
34.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
34.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
34.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
34.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
34.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
34.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
34.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
34.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
34.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
32.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
32.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
32.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
32.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
32.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
31.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
31.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
31.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
31.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
31.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
31.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
30.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
30.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
30.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
30.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
30.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
30.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
29.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
29.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
29.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
29.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
29.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
29.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
28.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
28.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
28.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
28.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
27.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
27.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
27.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
27.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
27.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
26.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
26.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
26.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
25.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
25.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
25.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
25.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
25.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
25.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
25.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
24.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
24.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
24.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
24.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
24.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
24.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
24.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
24.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
24.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
24.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
23.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
23.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
23.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
22.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
22.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
22.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
22.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
22.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
21.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
21.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
20.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
20.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
19.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
19.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
17.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
15.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
4.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MASP1 is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.1
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
83.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
55.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
54.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
53.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
47.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
46.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
45.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
45.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
45.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
44.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
44.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
43.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
43.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
42.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
42.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
42.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
42.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
40.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
40.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
39.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
39.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
39.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
37.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
36.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
35.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
35.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
34.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
33.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
33.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
33.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
32.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
31.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
31.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
31.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
31.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
31.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
30.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
30.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
30.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
29.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
29.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
28.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
28.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
28.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
26.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
26.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
26.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
26.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
26.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
25.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
25.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
25.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
23.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
22.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
22.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
21.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
2.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
2.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
1.2
538
Normal
0.8
554
Normal
0.8
368
Normal
0.6
468
Normal
0.6
1028
Normal
0.6
342
Normal
0.6
192
Normal
0.6
124
Normal
0.6
344
Normal
0.6
214
Normal
0.6
498
Normal
0.6
227
Tumor
0.5
412
Normal
0.5
392
Normal
0.5
564
Normal
0.5
136
Normal
0.5
386
Normal
0.5
218
Normal
0.5
312
Normal
0.5
924
Normal
0.5
452
Normal
0.5
816
Normal
0.5
877
Tumor
0.5
874
Normal
0.5
743
Tumor
0.5
952
Normal
0.5
864
Normal
0.5
546
Normal
0.5
376
Normal
0.4
188
Normal
0.4
568
Normal
0.4
258
Normal
0.4
332
Normal
0.4
148
Normal
0.4
222
Normal
0.4
618
Normal
0.4
956
Normal
0.4
474
Normal
0.4
272
Normal
0.4
186
Normal
0.4
132
Normal
0.4
558
Normal
0.4
982
Normal
0.4
878
Normal
0.4
696
Normal
0.4
744
Normal
0.4
466
Normal
0.4
494
Normal
0.4
746
Normal
0.3
1022
Normal
0.3
138
Normal
0.3
388
Normal
0.3
328
Normal
0.3
172
Normal
0.3
778
Normal
0.3
126
Normal
0.3
456
Normal
0.3
314
Normal
0.3
146
Normal
0.3
636
Normal
0.3
968
Normal
0.3
196
Normal
0.3
866
Normal
0.3
727
Tumor
0.3
976
Normal
0.3
642
Normal
0.3
686
Normal
0.3
426
Normal
0.3
1032
Normal
0.3
648
Normal
0.3
914
Normal
0.3
938
Normal
0.3
672
Normal
0.3
448
Normal
0.3
954
Normal
0.3
128
Normal
0.3
354
Normal
0.3
918
Normal
0.3
268
Normal
0.3
162
Normal
0.3
534
Normal
0.3
882
Normal
0.3
921
Tumor
0.3
981
Tumor
0.3
1016
Normal
0.3
142
Normal
0.3
966
Normal
0.2
862
Normal
0.2
852
Normal
0.2
714
Normal
0.2
984
Normal
0.2
478
Normal
0.2
278
Normal
0.2
416
Normal
0.2
1014
Normal
0.2
868
Normal
0.2
884
Normal
0.2
1045
Tumor
0.2
698
Normal
0.2
364
Normal
0.2
526
Normal
0.2
738
Normal
0.2
955
Tumor
0.2
111
Normal
0.2
484
Normal
0.2
524
Normal
0.2
1046
Normal
0.2
574
Normal
0.2
922
Normal
0.2
1044
Normal
0.2
488
Normal
0.2
114
Normal
0.2
343
Tumor
0.2
536
Normal
0.2
785
Tumor
0.2
628
Normal
0.2
516
Normal
0.2
394
Normal
0.2
572
Normal
0.2
472
Normal
0.2
228
Normal
0.2
464
Normal
0.2
428
Normal
0.2
313
Tumor
0.2
944
Normal
0.2
362
Normal
0.2
545
Tumor
0.2
518
Normal
0.2
327
Tumor
0.2
422
Normal
0.2
492
Normal
0.2
384
Normal
0.2
356
Normal
0.2
916
Normal
0.2
436
Normal
0.2
722
Normal
0.1
742
Normal
0.1
262
Normal
0.1
553
Tumor
0.1
1042
Normal
0.1
666
Normal
0.1
257
Tumor
0.1
414
Normal
0.1
818
Normal
0.1
232
Normal
0.1
462
Normal
0.1
212
Normal
0.1
514
Normal
0.1
465
Tumor
0.1
284
Normal
0.1
728
Normal
0.1
662
Normal
0.1
432
Normal
0.1
664
Normal
0.1
366
Normal
0.1
446
Normal
0.1
424
Normal
0.1
716
Normal
0.1
396
Normal
0.1
298
Normal
0.1
195
Tumor
0.1
695
Tumor
0.1
824
Normal
0.1
477
Tumor
0.1
755
Tumor
0.0
145
Tumor
0.0
415
Tumor
0.0
224
Normal
0.0
926
Normal
0.0
358
Normal
0.0
978
Normal
0.0
528
Normal
0.0
786
Normal
0.0
1026
Normal
0.0
423
Tumor
0.0
286
Normal
0.0
363
Tumor
0.0
217
Tumor
0.0
912
Normal
0.0
958
Normal
0.0
137
Tumor
0.0
461
Tumor
0.0
563
Tumor
0.0
375
Tumor
0.0
616
Normal
0.0
434
Normal
0.0
352
Normal
0.0
1043
Tumor
0.0
857
Tumor
-0.1
627
Tumor
-0.1
858
Normal
-0.1
393
Tumor
-0.1
913
Tumor
-0.1
444
Normal
-0.1
367
Tumor
-0.1
617
Tumor
-0.1
517
Tumor
-0.1
513
Tumor
-0.1
271
Tumor
-0.1
481
Tumor
-0.1
713
Tumor
-0.1
983
Tumor
-0.1
977
Tumor
-0.2
723
Tumor
-0.2
261
Tumor
-0.2
697
Tumor
-0.2
615
Tumor
-0.2
482
Normal
-0.2
756
Normal
-0.2
943
Tumor
-0.2
185
Tumor
-0.2
814
Normal
-0.2
567
Tumor
-0.2
515
Tumor
-0.2
964
Normal
-0.2
131
Tumor
-0.2
881
Tumor
-0.3
873
Tumor
-0.3
867
Tumor
-0.3
813
Tumor
-0.3
721
Tumor
-0.3
187
Tumor
-0.3
493
Tumor
-0.3
447
Tumor
-0.3
365
Tumor
-0.3
161
Tumor
-0.3
923
Tumor
-0.3
463
Tumor
-0.3
433
Tumor
-0.3
213
Tumor
-0.3
445
Tumor
-0.3
647
Tumor
-0.3
571
Tumor
-0.3
963
Tumor
-0.3
491
Tumor
-0.3
741
Tumor
-0.3
125
Tumor
-0.3
953
Tumor
-0.4
777
Tumor
-0.4
1025
Tumor
-0.4
135
Tumor
-0.4
671
Tumor
-0.4
383
Tumor
-0.4
421
Tumor
-0.4
285
Tumor
-0.4
361
Tumor
-0.4
191
Tumor
-0.4
523
Tumor
-0.4
353
Tumor
-0.4
277
Tumor
-0.4
745
Tumor
-0.4
483
Tumor
-0.4
112
Tumor
-0.4
311
Tumor
-0.4
297
Tumor
-0.4
823
Tumor
-0.4
533
Tumor
-0.4
221
Tumor
-0.4
665
Tumor
-0.5
573
Tumor
-0.5
1041
Tumor
-0.5
863
Tumor
-0.5
497
Tumor
-0.5
915
Tumor
-0.5
331
Tumor
-0.5
127
Tumor
-0.5
663
Tumor
-0.5
883
Tumor
-0.5
557
Tumor
-0.5
715
Tumor
-0.5
411
Tumor
-0.5
141
Tumor
-0.5
975
Tumor
-0.5
431
Tumor
-0.5
391
Tumor
-0.5
113
Tumor
-0.5
525
Tumor
-0.5
427
Tumor
-0.6
147
Tumor
-0.6
817
Tumor
-0.6
917
Tumor
-0.6
1015
Tumor
-0.6
341
Tumor
-0.6
635
Tumor
-0.6
455
Tumor
-0.6
451
Tumor
-0.6
861
Tumor
-0.6
355
Tumor
-0.6
387
Tumor
-0.6
535
Tumor
-0.7
967
Tumor
-0.7
1013
Tumor
-0.7
925
Tumor
-0.7
467
Tumor
-0.7
865
Tumor
-0.7
267
Tumor
-0.7
471
Tumor
-0.7
911
Tumor
-0.8
283
Tumor
-0.8
737
Tumor
-0.8
1031
Tumor
-0.8
435
Tumor
-0.8
487
Tumor
-0.8
223
Tumor
-0.8
957
Tumor
-0.8
171
Tumor
-0.8
357
Tumor
-0.8
413
Tumor
-0.9
685
Tumor
-0.9
851
Tumor
-0.9
473
Tumor
-0.9
937
Tumor
-0.9
527
Tumor
-0.9
965
Tumor
-0.9
231
Tumor
-0.9
641
Tumor
-1.0
351
Tumor
-1.0
951
Tumor
-1.0
443
Tumor
-1.0
395
Tumor
-1.0
1027
Tumor
-1.0
815
Tumor
-1.0
123
Tumor
-1.1
661
Tumor
-1.1
537
Tumor
-1.2
385
Tumor
-1.3
211
Tumor
-1.4
724
Normal
-1.4
1021
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
