MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.8 nTPM
HPA Brain:37.7 nTPM
GTEx:31.8 nTPM
FANTOM5:89.0 Scaled Tags Per Million
Pig:17.0 nTPM
Mouse:18.8 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 37.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.4
2411 Female, age 72, unknown 39.2
2219 Male, age 76, both hemispheres 37.9
2019 Male, age 18, unknown 37.7
2586 Male, age 75, left hemisphere 37.3
1830 Male, age 51, unknown 36.8
1833 Male, age 53, unknown 34.6
1827 Male, age 72, unknown 34.1
2828 Female, age 72, unknown 33.5
2666 Male, age 74, left hemisphere 31.7
1870 Female, age 42, unknown 31.6
Dorsal raphe nucleus
nTPM: 33.9
2750 Male, age 76, both hemispheres 36.8
1828 Male, age 53, unknown 34.8
2047 Male, age 72, unknown 33.2
2298 Female, age 72, unknown 33.0
2016 Female, age 72, unknown 31.8
Inferior colliculus
nTPM: 31.6
2849 Male, age 72, unknown 35.8
1848 Female, age 42, unknown 30.6
1890 Male, age 53, unknown 30.5
2097 Female, age 72, unknown 29.5
Median raphe nucleus
nTPM: 30.2
2220 Male, age 76, midline 30.2
Periaquaductal grey, anterior
nTPM: 32.7
1947 Male, age 18, unknown 33.0
2502 Female, age 75, unknown 32.9
1795 Male, age 51, unknown 32.3
Periaquaductal grey, dorsal
nTPM: 31.1
2850 Male, age 76, both hemispheres 35.7
2464 Female, age 72, unknown 32.4
1831 Male, age 72, unknown 29.1
1840 Male, age 53, unknown 27.3
Periaquaductal grey, lateral
nTPM: 34.4
2272 Male, age 74, both hemispheres 38.7
2140 Male, age 76, both hemispheres 34.1
2053 Male, age 18, unknown 30.4
Pretectal area
nTPM: 34.2
2667 Female, age 75, unknown 41.2
2007 Male, age 72, unknown 37.8
1817 Female, age 42, unknown 36.5
2407 Male, age 75, both hemispheres 35.5
2316 Male, age 76, right hemisphere 35.1
1815 Male, age 53, unknown 33.8
1816 Male, age 51, unknown 32.1
2825 Male, age 18, unknown 32.0
1944 Female, age 72, unknown 31.5
2273 Male, age 74, both hemispheres 30.7
2224 Female, age 72, unknown 30.0
Red nucleus
nTPM: 37.7
2769 Male, age 72, unknown 40.8
2823 Male, age 76, right hemisphere 40.8
1904 Male, age 53, unknown 38.7
2785 Male, age 18, unknown 38.6
1865 Male, age 51, unknown 38.2
2503 Female, age 72, unknown 37.8
2588 Male, age 74, left hemisphere 36.9
1821 Female, age 72, unknown 36.7
2227 Male, age 72, unknown 36.3
2584 Male, age 75, left hemisphere 36.2
2725 Female, age 75, unknown 36.1
1954 Female, age 42, unknown 35.6
Substantia nigra
nTPM: 34.8
1941 Male, age 53, unknown 42.9
1916 Female, age 42, unknown 41.6
2699 Male, age 18, unknown 38.9
1851 Male, age 51, unknown 37.4
1889 Female, age 72, unknown 33.6
2409 Female, age 72, unknown 32.4
2665 Male, age 74, both hemispheres 32.3
2583 Male, age 75, right hemisphere 30.0
2590 Female, age 75, unknown 30.0
2241 Male, age 72, unknown 29.0
Superior colliculus
nTPM: 33.5
1913 Female, age 42, unknown 35.4
1839 Male, age 51, unknown 35.3
2664 Male, age 75, both hemispheres 34.6
1895 Male, age 76, right hemisphere 34.5
1995 Male, age 72, unknown 34.0
2087 Female, age 72, unknown 33.0
2668 Female, age 75, unknown 33.0
2261 Male, age 18, unknown 32.3
1796 Male, age 53, unknown 31.8
2587 Male, age 74, left hemisphere 31.2
Ventral tegmental area
nTPM: 34.0
2410 Female, age 72, unknown 38.3
1915 Female, age 42, unknown 37.0
2218 Male, age 76, both hemispheres 33.1
2021 Male, age 53, unknown 32.8
2223 Female, age 72, unknown 32.5
1942 Male, age 51, unknown 30.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 31.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.8
Samples: 139

Max nTPM: 64.2
Min nTPM: 16.8
Std nTPM: 7.7
Median nTPM: 31.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 64.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 61.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 55.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 50.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 48.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 47.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 46.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 45.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 44.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 44.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 42.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 89.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.0
FF:10158-103A5 76 years, female 89.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.4
Samples: 4

Max nTPM: 18.8
Min nTPM: 12.2
Sample A Female 18.8
Sample B Female 12.9
Sample C Male 17.7
Sample D Male 12.2
Midbrain
nTPM: 16.5
Samples: 4

Max nTPM: 21.3
Min nTPM: 12.1
Sample A Female 18.4
Sample B Female 12.1
Sample C Male 21.3
Sample D Male 14.3
Periaqueductal gray
nTPM: 12.9
Samples: 3

Max nTPM: 15.6
Min nTPM: 11.5
Sample B Female 11.6
Sample C Male 15.6
Sample D Male 11.5
Superior colliculi
nTPM: 17.0
Samples: 4

Max nTPM: 19.1
Min nTPM: 14.2
Sample A Female 18.5
Sample B Female 16.2
Sample C Male 19.1
Sample D Male 14.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 18.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 19.8
Min nTPM: 18.0
Sample A Male 18.9
Sample B Male 18.0
Sample C Female 19.8
Sample D Female 18.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
74357611 Antisense, RP_060119_03_B01, Mouse strain C57BL/6J (56 days, male) 1.9

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