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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RHOT1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
15.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
2.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RHOT1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.3
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
30.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
0.8
423
Tumor
0.8
487
Tumor
0.6
465
Tumor
0.6
127
Tumor
0.6
491
Tumor
0.5
411
Tumor
0.5
981
Tumor
0.5
231
Tumor
0.5
1013
Tumor
0.5
257
Tumor
0.5
1027
Tumor
0.4
161
Tumor
0.4
261
Tumor
0.4
128
Normal
0.4
357
Tumor
0.3
351
Tumor
0.3
915
Tumor
0.3
533
Tumor
0.3
277
Tumor
0.3
435
Tumor
0.3
332
Normal
0.3
867
Tumor
0.3
171
Tumor
0.3
353
Tumor
0.3
861
Tumor
0.3
746
Normal
0.3
278
Normal
0.3
1041
Tumor
0.3
515
Tumor
0.3
314
Normal
0.3
741
Tumor
0.3
341
Tumor
0.3
358
Normal
0.3
365
Tumor
0.2
571
Tumor
0.2
393
Tumor
0.2
186
Normal
0.2
615
Tumor
0.2
745
Tumor
0.2
162
Normal
0.2
111
Normal
0.2
436
Normal
0.2
361
Tumor
0.2
957
Tumor
0.2
785
Tumor
0.2
663
Tumor
0.2
123
Tumor
0.2
222
Normal
0.2
342
Normal
0.2
147
Tumor
0.2
695
Tumor
0.2
862
Normal
0.2
618
Normal
0.2
727
Tumor
0.2
715
Tumor
0.2
137
Tumor
0.2
513
Tumor
0.2
925
Tumor
0.2
1043
Tumor
0.2
698
Normal
0.2
564
Normal
0.2
865
Tumor
0.1
858
Normal
0.1
554
Normal
0.1
258
Normal
0.1
363
Tumor
0.1
426
Normal
0.1
635
Tumor
0.1
517
Tumor
0.1
172
Normal
0.1
148
Normal
0.1
114
Normal
0.1
777
Tumor
0.1
298
Normal
0.1
666
Normal
0.1
738
Normal
0.1
665
Tumor
0.1
1045
Tumor
0.1
227
Tumor
0.1
196
Normal
0.1
445
Tumor
0.1
824
Normal
0.1
815
Tumor
0.1
744
Normal
0.1
313
Tumor
0.1
448
Normal
0.1
568
Normal
0.1
214
Normal
0.1
376
Normal
0.1
428
Normal
0.1
967
Tumor
0.1
641
Tumor
0.1
422
Normal
0.1
648
Normal
0.1
742
Normal
0.1
636
Normal
0.1
461
Tumor
0.1
482
Normal
0.1
312
Normal
0.1
218
Normal
0.1
1046
Normal
0.1
874
Normal
0.1
534
Normal
0.1
112
Tumor
0.1
723
Tumor
0.1
141
Tumor
0.1
124
Normal
0.1
481
Tumor
0.1
328
Normal
0.1
473
Tumor
0.0
452
Normal
0.0
553
Tumor
0.0
412
Normal
0.0
523
Tumor
0.0
911
Tumor
0.0
185
Tumor
0.0
388
Normal
0.0
136
Normal
0.0
642
Normal
0.0
396
Normal
0.0
866
Normal
0.0
816
Normal
0.0
424
Normal
0.0
662
Normal
0.0
572
Normal
0.0
455
Tumor
0.0
352
Normal
0.0
982
Normal
0.0
354
Normal
0.0
431
Tumor
0.0
286
Normal
0.0
818
Normal
0.0
195
Tumor
0.0
664
Normal
0.0
142
Normal
0.0
912
Normal
0.0
527
Tumor
0.0
526
Normal
0.0
414
Normal
0.0
786
Normal
0.0
484
Normal
0.0
443
Tumor
0.0
1026
Normal
0.0
922
Normal
0.0
574
Normal
0.0
728
Normal
0.0
272
Normal
0.0
743
Tumor
0.0
192
Normal
0.0
132
Normal
0.0
394
Normal
0.0
882
Normal
0.0
914
Normal
0.0
878
Normal
0.0
375
Tumor
0.0
472
Normal
0.0
525
Tumor
0.0
1016
Normal
0.0
616
Normal
0.0
464
Normal
0.0
232
Normal
0.0
416
Normal
0.0
462
Normal
0.0
145
Tumor
0.0
344
Normal
0.0
268
Normal
0.0
628
Normal
0.0
518
Normal
0.0
883
Tumor
0.0
1014
Normal
0.0
466
Normal
0.0
362
Normal
0.0
884
Normal
0.0
497
Tumor
0.0
953
Tumor
0.0
868
Normal
0.0
477
Tumor
0.0
187
Tumor
0.0
262
Normal
0.0
964
Normal
0.0
1028
Normal
-0.1
755
Tumor
-0.1
546
Normal
-0.1
1022
Normal
-0.1
138
Normal
-0.1
392
Normal
-0.1
421
Tumor
-0.1
433
Tumor
-0.1
1032
Normal
-0.1
952
Normal
-0.1
873
Tumor
-0.1
1042
Normal
-0.1
923
Tumor
-0.1
366
Normal
-0.1
271
Tumor
-0.1
474
Normal
-0.1
722
Normal
-0.1
368
Normal
-0.1
126
Normal
-0.1
573
Tumor
-0.1
864
Normal
-0.1
267
Tumor
-0.1
567
Tumor
-0.1
926
Normal
-0.1
356
Normal
-0.1
228
Normal
-0.1
188
Normal
-0.1
514
Normal
-0.1
671
Tumor
-0.1
852
Normal
-0.1
813
Tumor
-0.1
557
Tumor
-0.1
647
Tumor
-0.1
383
Tumor
-0.1
756
Normal
-0.1
395
Tumor
-0.1
446
Normal
-0.1
135
Tumor
-0.1
113
Tumor
-0.1
918
Normal
-0.1
937
Tumor
-0.1
483
Tumor
-0.1
131
Tumor
-0.1
364
Normal
-0.1
977
Tumor
-0.1
191
Tumor
-0.1
877
Tumor
-0.1
285
Tumor
-0.1
716
Normal
-0.1
391
Tumor
-0.1
944
Normal
-0.1
494
Normal
-0.1
672
Normal
-0.1
528
Normal
-0.1
696
Normal
-0.2
384
Normal
-0.2
297
Tumor
-0.2
427
Tumor
-0.2
468
Normal
-0.2
1015
Tumor
-0.2
217
Tumor
-0.2
984
Normal
-0.2
327
Tumor
-0.2
488
Normal
-0.2
714
Normal
-0.2
1044
Normal
-0.2
456
Normal
-0.2
386
Normal
-0.2
778
Normal
-0.2
924
Normal
-0.2
146
Normal
-0.2
713
Tumor
-0.2
355
Tumor
-0.2
331
Tumor
-0.2
863
Tumor
-0.2
224
Normal
-0.2
558
Normal
-0.2
385
Tumor
-0.2
686
Normal
-0.2
415
Tumor
-0.2
223
Tumor
-0.2
955
Tumor
-0.2
857
Tumor
-0.2
432
Normal
-0.2
284
Normal
-0.2
538
Normal
-0.2
471
Tumor
-0.2
823
Tumor
-0.2
1031
Tumor
-0.2
851
Tumor
-0.2
478
Normal
-0.2
213
Tumor
-0.2
721
Tumor
-0.2
492
Normal
-0.2
221
Tumor
-0.2
212
Normal
-0.2
537
Tumor
-0.3
916
Normal
-0.3
938
Normal
-0.3
434
Normal
-0.3
968
Normal
-0.3
425
Tumor
-0.3
516
Normal
-0.3
1021
Tumor
-0.3
956
Normal
-0.3
1025
Tumor
-0.3
978
Normal
-0.3
451
Tumor
-0.3
965
Tumor
-0.3
685
Tumor
-0.3
966
Normal
-0.3
524
Normal
-0.3
463
Tumor
-0.3
311
Tumor
-0.3
617
Tumor
-0.3
125
Tumor
-0.3
447
Tumor
-0.3
954
Normal
-0.3
976
Normal
-0.3
498
Normal
-0.3
881
Tumor
-0.3
535
Tumor
-0.3
563
Tumor
-0.3
958
Normal
-0.3
724
Normal
-0.3
913
Tumor
-0.4
413
Tumor
-0.4
963
Tumor
-0.4
343
Tumor
-0.4
493
Tumor
-0.4
444
Normal
-0.4
467
Tumor
-0.4
536
Normal
-0.4
545
Tumor
-0.4
697
Tumor
-0.4
367
Tumor
-0.4
661
Tumor
-0.4
283
Tumor
-0.4
387
Tumor
-0.5
211
Tumor
-0.5
814
Normal
-0.5
921
Tumor
-0.5
983
Tumor
-0.5
917
Tumor
-0.5
943
Tumor
-0.5
951
Tumor
-0.6
737
Tumor
-0.6
817
Tumor
-0.7
975
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
