MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.9 nTPM
HPA Brain:11.0 nTPM
GTEx:2.9 nTPM
FANTOM5:6.5 Scaled Tags Per Million
Pig:8.5 nTPM
Mouse:17.4 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 11.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.6
2219 Male, age 76, both hemispheres 9.4
1870 Female, age 42, unknown 9.1
1827 Male, age 72, unknown 9.0
2411 Female, age 72, unknown 8.9
1833 Male, age 53, unknown 8.7
2019 Male, age 18, unknown 8.7
2666 Male, age 74, left hemisphere 8.2
2828 Female, age 72, unknown 8.1
2586 Male, age 75, left hemisphere 7.9
1830 Male, age 51, unknown 7.8
Dorsal raphe nucleus
nTPM: 8.7
2298 Female, age 72, unknown 9.6
2047 Male, age 72, unknown 9.0
2750 Male, age 76, both hemispheres 8.4
1828 Male, age 53, unknown 8.3
2016 Female, age 72, unknown 8.0
Inferior colliculus
nTPM: 9.8
2097 Female, age 72, unknown 10.7
1890 Male, age 53, unknown 10.2
1848 Female, age 42, unknown 9.4
2849 Male, age 72, unknown 8.9
Median raphe nucleus
nTPM: 11.0
2220 Male, age 76, midline 11.0
Periaquaductal grey, anterior
nTPM: 8.8
1947 Male, age 18, unknown 10.0
2502 Female, age 75, unknown 8.4
1795 Male, age 51, unknown 8.0
Periaquaductal grey, dorsal
nTPM: 9.8
1840 Male, age 53, unknown 11.2
2850 Male, age 76, both hemispheres 9.8
1831 Male, age 72, unknown 9.5
2464 Female, age 72, unknown 8.6
Periaquaductal grey, lateral
nTPM: 9.3
2140 Male, age 76, both hemispheres 9.5
2053 Male, age 18, unknown 9.4
2272 Male, age 74, both hemispheres 8.9
Pretectal area
nTPM: 9.6
1944 Female, age 72, unknown 11.5
1815 Male, age 53, unknown 10.4
1816 Male, age 51, unknown 10.2
2007 Male, age 72, unknown 10.0
2273 Male, age 74, both hemispheres 9.9
2316 Male, age 76, right hemisphere 9.9
1817 Female, age 42, unknown 9.4
2667 Female, age 75, unknown 9.3
2224 Female, age 72, unknown 9.2
2407 Male, age 75, both hemispheres 8.3
2825 Male, age 18, unknown 7.4
Red nucleus
nTPM: 9.0
1821 Female, age 72, unknown 10.4
1954 Female, age 42, unknown 10.4
1865 Male, age 51, unknown 10.0
2503 Female, age 72, unknown 9.6
2785 Male, age 18, unknown 9.4
2725 Female, age 75, unknown 9.2
2769 Male, age 72, unknown 8.8
1904 Male, age 53, unknown 8.7
2588 Male, age 74, left hemisphere 8.3
2227 Male, age 72, unknown 8.0
2823 Male, age 76, right hemisphere 7.8
2584 Male, age 75, left hemisphere 7.3
Substantia nigra
nTPM: 8.7
2409 Female, age 72, unknown 10.3
1889 Female, age 72, unknown 9.7
2699 Male, age 18, unknown 9.1
2241 Male, age 72, unknown 9.0
1851 Male, age 51, unknown 8.6
2583 Male, age 75, right hemisphere 8.3
1941 Male, age 53, unknown 8.2
1916 Female, age 42, unknown 8.1
2590 Female, age 75, unknown 8.1
2665 Male, age 74, both hemispheres 7.6
Superior colliculus
nTPM: 9.1
1895 Male, age 76, right hemisphere 10.4
2668 Female, age 75, unknown 10.1
1995 Male, age 72, unknown 9.7
2087 Female, age 72, unknown 9.6
2587 Male, age 74, left hemisphere 9.6
1839 Male, age 51, unknown 9.0
1796 Male, age 53, unknown 8.9
2261 Male, age 18, unknown 8.9
1913 Female, age 42, unknown 8.2
2664 Male, age 75, both hemispheres 6.8
Ventral tegmental area
nTPM: 9.5
1915 Female, age 42, unknown 10.3
2218 Male, age 76, both hemispheres 10.0
2223 Female, age 72, unknown 9.8
1942 Male, age 51, unknown 9.7
2410 Female, age 72, unknown 9.2
2021 Male, age 53, unknown 8.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.9
Samples: 139

Max nTPM: 5.8
Min nTPM: 1.7
Std nTPM: 0.5
Median nTPM: 2.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 5.8
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 4.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 4.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 4.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 4.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 4.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 4.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 3.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 3.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 3.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 6.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.5
FF:10158-103A5 76 years, female 6.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 8.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.8
Samples: 4

Max nTPM: 7.8
Min nTPM: 6.2
Sample A Female 7.8
Sample B Female 6.3
Sample C Male 6.9
Sample D Male 6.2
Midbrain
nTPM: 7.8
Samples: 4

Max nTPM: 8.9
Min nTPM: 6.6
Sample A Female 6.6
Sample B Female 7.1
Sample C Male 8.9
Sample D Male 8.7
Periaqueductal gray
nTPM: 6.6
Samples: 3

Max nTPM: 7.3
Min nTPM: 6.2
Sample B Female 6.3
Sample C Male 6.2
Sample D Male 7.3
Superior colliculi
nTPM: 8.5
Samples: 4

Max nTPM: 10.5
Min nTPM: 7.6
Sample A Female 8.1
Sample B Female 7.6
Sample C Male 10.5
Sample D Male 7.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.4
Samples: 4

Max nTPM: 21.3
Min nTPM: 15.4
Sample A Male 17.1
Sample B Male 15.9
Sample C Female 21.3
Sample D Female 15.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
68546422 Antisense, RP_050120_02_E01, Mouse strain C57BL/6J (56 days, male) 0.8

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