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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TIMM17B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
51.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
170.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
157.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
147.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
145.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
130.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
123.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
116.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
113.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
107.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
105.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
103.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
99.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
98.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
97.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
97.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
96.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
96.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
95.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
94.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
93.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
93.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
91.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
91.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
90.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
89.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
88.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
86.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
86.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
85.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
85.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
85.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
85.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
85.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
84.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
83.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
83.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
82.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
81.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
81.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
80.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
80.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
79.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
79.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
79.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
79.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
78.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
77.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
77.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
76.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
75.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
74.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
74.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
74.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
74.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
73.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
73.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
73.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
73.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
72.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
72.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
71.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
70.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
70.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
69.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
69.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
68.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
67.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
67.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
67.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
66.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
65.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
65.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
65.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
64.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
63.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
63.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
63.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
63.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
63.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
63.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
63.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
62.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
62.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
62.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
62.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
62.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
61.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
61.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
61.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
61.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
61.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
61.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
61.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
61.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
60.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
60.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
60.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
59.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
59.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
59.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
58.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
58.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
58.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
58.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
57.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
57.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
57.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
57.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
57.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
56.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
56.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
56.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
56.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
55.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
55.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
55.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
55.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
55.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
55.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
55.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
55.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
54.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
54.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
54.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
54.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
54.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
54.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
53.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
53.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
53.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
53.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
53.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
53.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
53.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
53.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
52.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
52.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
52.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
52.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
52.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
51.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
51.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
51.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
51.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
51.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
51.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
51.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
51.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
50.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
50.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
50.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
50.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
50.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
50.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
49.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
49.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
49.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
49.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
49.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
49.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
49.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
48.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
48.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
48.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
48.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
48.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
48.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
48.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
48.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
47.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
47.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
47.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
47.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
47.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
47.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
47.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
47.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
46.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
46.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
46.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
45.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
45.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
45.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
45.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
45.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
44.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
44.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
44.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
44.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
43.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
43.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
43.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
43.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
43.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
43.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
43.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
43.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
42.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
42.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
42.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
42.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
42.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
42.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
42.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
42.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
42.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
42.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
42.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
42.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
42.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
42.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
42.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
41.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
41.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
41.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
41.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
41.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
41.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
41.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
41.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
41.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
40.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
40.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
40.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
40.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
40.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
40.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
40.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
40.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
40.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
39.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
39.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
39.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
39.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
39.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
39.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
38.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
38.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
38.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
38.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
38.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
38.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
38.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
38.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
37.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
37.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
37.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
37.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
37.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
37.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
37.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
37.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
37.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
36.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
36.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
36.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
36.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
36.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
36.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
36.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
36.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
36.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
36.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
36.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
36.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
36.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
35.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
35.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
35.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
35.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
35.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
35.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
35.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
34.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
34.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
34.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
34.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
34.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
34.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
34.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
34.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
34.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
33.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
33.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
33.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
33.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
33.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
33.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
33.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
33.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
33.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
33.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
33.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
33.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
33.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
32.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
32.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
32.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
32.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
32.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
32.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
31.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
31.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
31.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
31.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
31.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
31.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
30.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
30.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
30.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
30.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
30.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
30.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
29.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
29.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
28.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
28.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
28.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
28.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
28.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
28.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
28.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
27.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
27.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
27.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
26.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
26.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
26.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
25.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
25.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
25.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
25.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
24.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
23.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
23.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
22.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
21.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TIMM17B is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.9
Number of samples
231
Samples
Sample
Description
TPM
DO45283
0 years, male, NA, stage:3, alive, 510 days
195.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
92.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
87.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
80.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
76.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
74.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
68.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
65.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
65.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
64.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
64.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
63.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
62.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
62.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
61.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
60.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
60.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
59.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
58.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
57.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
55.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
53.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
52.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
52.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
51.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
51.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
51.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
50.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
49.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
49.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
48.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
48.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
48.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
47.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
47.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
45.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
45.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
43.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
43.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
42.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
42.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
41.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
41.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
41.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
40.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
40.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
40.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
40.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
40.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
40.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
40.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
39.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
38.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
38.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
38.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
38.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
38.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
38.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
38.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
37.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
37.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
37.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
37.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
36.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
36.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
36.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
36.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
36.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
35.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
35.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
34.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
34.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
34.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
34.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
33.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
33.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
33.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
33.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
32.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
32.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
32.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
32.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
32.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
32.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
32.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
31.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
31.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
31.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
31.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
31.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
30.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
30.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
30.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
30.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
30.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
30.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
29.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
29.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
29.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
29.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
28.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
28.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
28.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
28.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
28.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
27.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
27.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
27.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
27.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
27.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
27.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
26.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
26.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
26.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
26.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
26.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
26.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
26.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
26.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
25.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
25.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
24.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
23.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
23.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
23.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
23.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
23.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
22.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
22.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
22.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
22.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
22.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
21.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
20.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
635
Tumor
1.0
815
Tumor
1.0
925
Tumor
1.0
141
Tumor
0.9
443
Tumor
0.8
135
Tumor
0.8
127
Tumor
0.8
571
Tumor
0.8
231
Tumor
0.8
411
Tumor
0.7
435
Tumor
0.7
465
Tumor
0.7
367
Tumor
0.7
391
Tumor
0.7
741
Tumor
0.7
567
Tumor
0.7
627
Tumor
0.7
267
Tumor
0.7
145
Tumor
0.6
477
Tumor
0.6
341
Tumor
0.6
171
Tumor
0.5
387
Tumor
0.5
745
Tumor
0.5
473
Tumor
0.5
671
Tumor
0.5
393
Tumor
0.5
363
Tumor
0.5
221
Tumor
0.4
361
Tumor
0.4
161
Tumor
0.4
137
Tumor
0.4
351
Tumor
0.4
641
Tumor
0.4
423
Tumor
0.4
661
Tumor
0.4
357
Tumor
0.4
445
Tumor
0.3
131
Tumor
0.3
385
Tumor
0.3
113
Tumor
0.3
436
Normal
0.3
1027
Tumor
0.3
297
Tumor
0.3
463
Tumor
0.3
695
Tumor
0.3
452
Normal
0.3
1043
Tumor
0.3
685
Tumor
0.3
313
Tumor
0.2
431
Tumor
0.2
615
Tumor
0.2
185
Tumor
0.2
123
Tumor
0.2
568
Normal
0.2
921
Tumor
0.2
647
Tumor
0.2
446
Normal
0.2
433
Tumor
0.2
112
Tumor
0.2
232
Normal
0.2
564
Normal
0.2
146
Normal
0.2
755
Tumor
0.2
883
Tumor
0.2
271
Tumor
0.2
743
Tumor
0.2
451
Tumor
0.2
873
Tumor
0.2
563
Tumor
0.2
365
Tumor
0.2
636
Normal
0.2
277
Tumor
0.1
537
Tumor
0.1
125
Tumor
0.1
395
Tumor
0.1
517
Tumor
0.1
285
Tumor
0.1
558
Normal
0.1
142
Normal
0.1
785
Tumor
0.1
258
Normal
0.1
642
Normal
0.1
196
Normal
0.1
148
Normal
0.1
468
Normal
0.1
557
Tumor
0.1
413
Tumor
0.1
394
Normal
0.1
257
Tumor
0.1
218
Normal
0.1
967
Tumor
0.1
268
Normal
0.1
432
Normal
0.1
138
Normal
0.1
965
Tumor
0.1
572
Normal
0.1
286
Normal
0.1
444
Normal
0.1
195
Tumor
0.1
136
Normal
0.1
1041
Tumor
0.1
617
Tumor
0.1
742
Normal
0.1
332
Normal
0.0
777
Tumor
0.0
618
Normal
0.0
861
Tumor
0.0
513
Tumor
0.0
392
Normal
0.0
727
Tumor
0.0
186
Normal
0.0
124
Normal
0.0
217
Tumor
0.0
187
Tumor
0.0
298
Normal
0.0
376
Normal
0.0
388
Normal
0.0
455
Tumor
0.0
162
Normal
0.0
466
Normal
0.0
396
Normal
0.0
983
Tumor
0.0
425
Tumor
0.0
824
Normal
0.0
882
Normal
0.0
223
Tumor
0.0
132
Normal
0.0
724
Normal
0.0
515
Tumor
0.0
383
Tumor
0.0
865
Tumor
0.0
954
Normal
0.0
884
Normal
0.0
278
Normal
0.0
172
Normal
0.0
128
Normal
0.0
912
Normal
0.0
1045
Tumor
0.0
426
Normal
0.0
953
Tumor
0.0
114
Normal
0.0
314
Normal
0.0
353
Tumor
0.0
261
Tumor
0.0
786
Normal
0.0
1015
Tumor
0.0
738
Normal
0.0
224
Normal
0.0
1046
Normal
0.0
535
Tumor
-0.1
356
Normal
-0.1
481
Tumor
-0.1
858
Normal
-0.1
1031
Tumor
-0.1
421
Tumor
-0.1
573
Tumor
-0.1
434
Normal
-0.1
1021
Tumor
-0.1
744
Normal
-0.1
913
Tumor
-0.1
464
Normal
-0.1
352
Normal
-0.1
937
Tumor
-0.1
366
Normal
-0.1
368
Normal
-0.1
628
Normal
-0.1
384
Normal
-0.1
284
Normal
-0.1
851
Tumor
-0.1
386
Normal
-0.1
424
Normal
-0.1
147
Tumor
-0.1
111
Normal
-0.1
878
Normal
-0.1
272
Normal
-0.1
526
Normal
-0.1
756
Normal
-0.1
262
Normal
-0.1
662
Normal
-0.1
448
Normal
-0.1
713
Tumor
-0.1
574
Normal
-0.1
422
Normal
-0.1
955
Tumor
-0.1
818
Normal
-0.1
911
Tumor
-0.1
664
Normal
-0.1
528
Normal
-0.1
461
Tumor
-0.1
427
Tumor
-0.1
227
Tumor
-0.1
414
Normal
-0.1
342
Normal
-0.1
914
Normal
-0.1
331
Tumor
-0.1
864
Normal
-0.1
1025
Tumor
-0.1
648
Normal
-0.1
746
Normal
-0.1
867
Tumor
-0.1
545
Tumor
-0.1
616
Normal
-0.1
817
Tumor
-0.1
354
Normal
-0.1
981
Tumor
-0.1
523
Tumor
-0.1
222
Normal
-0.1
944
Normal
-0.2
723
Tumor
-0.2
813
Tumor
-0.2
362
Normal
-0.2
1014
Normal
-0.2
344
Normal
-0.2
126
Normal
-0.2
546
Normal
-0.2
881
Tumor
-0.2
328
Normal
-0.2
518
Normal
-0.2
697
Tumor
-0.2
877
Tumor
-0.2
665
Tumor
-0.2
923
Tumor
-0.2
984
Normal
-0.2
698
Normal
-0.2
672
Normal
-0.2
428
Normal
-0.2
924
Normal
-0.2
728
Normal
-0.2
358
Normal
-0.2
484
Normal
-0.2
188
Normal
-0.2
915
Tumor
-0.2
1026
Normal
-0.2
816
Normal
-0.2
375
Tumor
-0.2
778
Normal
-0.2
716
Normal
-0.2
364
Normal
-0.2
857
Tumor
-0.2
721
Tumor
-0.2
471
Tumor
-0.2
343
Tumor
-0.2
412
Normal
-0.2
978
Normal
-0.2
663
Tumor
-0.2
228
Normal
-0.3
1044
Normal
-0.3
488
Normal
-0.3
715
Tumor
-0.3
666
Normal
-0.3
467
Tumor
-0.3
1016
Normal
-0.3
312
Normal
-0.3
553
Tumor
-0.3
862
Normal
-0.3
311
Tumor
-0.3
737
Tumor
-0.3
696
Normal
-0.3
474
Normal
-0.3
922
Normal
-0.3
487
Tumor
-0.3
1022
Normal
-0.3
938
Normal
-0.3
456
Normal
-0.3
714
Normal
-0.3
982
Normal
-0.3
868
Normal
-0.3
447
Tumor
-0.3
1028
Normal
-0.3
514
Normal
-0.3
212
Normal
-0.3
524
Normal
-0.3
852
Normal
-0.3
952
Normal
-0.3
494
Normal
-0.3
686
Normal
-0.3
214
Normal
-0.3
527
Tumor
-0.3
722
Normal
-0.3
516
Normal
-0.3
975
Tumor
-0.3
462
Normal
-0.3
416
Normal
-0.3
525
Tumor
-0.4
554
Normal
-0.4
538
Normal
-0.4
191
Tumor
-0.4
1032
Normal
-0.4
918
Normal
-0.4
814
Normal
-0.4
866
Normal
-0.4
963
Tumor
-0.4
534
Normal
-0.4
493
Tumor
-0.4
916
Normal
-0.4
327
Tumor
-0.4
536
Normal
-0.4
355
Tumor
-0.4
956
Normal
-0.4
1042
Normal
-0.5
415
Tumor
-0.5
478
Normal
-0.5
917
Tumor
-0.5
863
Tumor
-0.5
472
Normal
-0.5
926
Normal
-0.5
483
Tumor
-0.5
951
Tumor
-0.5
192
Normal
-0.5
874
Normal
-0.5
482
Normal
-0.6
498
Normal
-0.6
1013
Tumor
-0.6
213
Tumor
-0.6
964
Normal
-0.6
497
Tumor
-0.7
966
Normal
-0.7
977
Tumor
-0.7
823
Tumor
-0.7
283
Tumor
-0.8
492
Normal
-0.8
943
Tumor
-0.8
491
Tumor
-0.8
211
Tumor
-0.8
533
Tumor
-0.8
968
Normal
-0.9
976
Normal
-0.9
958
Normal
-1.1
957
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
