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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EMG1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
79.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
77.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
58.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
56.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
54.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
54.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
51.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
51.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
48.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
46.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
46.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
45.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
45.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
44.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
43.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
43.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
43.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
42.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
42.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
41.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
41.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
38.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
38.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
37.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
35.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
35.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
34.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
34.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
34.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
34.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
33.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
32.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
32.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
31.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
31.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
31.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
31.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
30.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
30.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
29.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
28.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
28.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
28.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
28.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
28.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
27.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
26.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
26.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
26.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
26.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
26.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
26.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
26.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
26.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
25.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
25.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
24.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
24.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
24.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
24.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
24.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
23.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
23.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
23.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
23.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
23.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
23.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
22.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
22.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
22.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
22.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
22.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
22.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
22.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
22.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
21.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
21.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
21.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
20.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
20.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
20.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
20.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
20.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
19.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
19.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
19.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
19.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
18.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
17.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
16.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
16.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
16.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EMG1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.1
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
109.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
78.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
77.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
69.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
68.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
65.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
64.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
59.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
53.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
49.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
47.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
43.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
43.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
43.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
41.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
41.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
40.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
39.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
39.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
38.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
37.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
37.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
35.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
35.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
35.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
34.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
34.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
34.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
33.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
33.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
33.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
32.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
32.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
31.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
31.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
30.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
30.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
29.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
29.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
29.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
29.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
27.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
27.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
26.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
26.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
26.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
25.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
25.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
25.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
24.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
24.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
24.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
24.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
24.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
24.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
24.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
24.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
23.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
22.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
19.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
19.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
16.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
351
Tumor
1.2
671
Tumor
1.1
967
Tumor
1.0
123
Tumor
1.0
877
Tumor
0.9
951
Tumor
0.9
965
Tumor
0.9
227
Tumor
0.8
331
Tumor
0.7
367
Tumor
0.6
661
Tumor
0.6
635
Tumor
0.5
423
Tumor
0.5
817
Tumor
0.5
665
Tumor
0.5
131
Tumor
0.5
1021
Tumor
0.5
983
Tumor
0.5
724
Normal
0.5
685
Tumor
0.5
743
Tumor
0.4
413
Tumor
0.4
427
Tumor
0.4
285
Tumor
0.4
1041
Tumor
0.4
815
Tumor
0.4
567
Tumor
0.3
127
Tumor
0.3
112
Tumor
0.3
957
Tumor
0.3
473
Tumor
0.3
517
Tumor
0.3
171
Tumor
0.3
483
Tumor
0.3
535
Tumor
0.3
865
Tumor
0.3
1013
Tumor
0.3
573
Tumor
0.3
697
Tumor
0.3
425
Tumor
0.3
387
Tumor
0.3
537
Tumor
0.2
1025
Tumor
0.2
363
Tumor
0.2
385
Tumor
0.2
925
Tumor
0.2
1031
Tumor
0.2
883
Tumor
0.2
428
Normal
0.2
913
Tumor
0.2
493
Tumor
0.2
867
Tumor
0.2
221
Tumor
0.2
353
Tumor
0.2
391
Tumor
0.2
861
Tumor
0.1
217
Tumor
0.1
737
Tumor
0.1
211
Tumor
0.1
647
Tumor
0.1
414
Normal
0.1
741
Tumor
0.1
873
Tumor
0.1
447
Tumor
0.1
113
Tumor
0.1
755
Tumor
0.1
267
Tumor
0.1
213
Tumor
0.1
394
Normal
0.1
851
Tumor
0.1
525
Tumor
0.1
977
Tumor
0.1
477
Tumor
0.1
727
Tumor
0.1
187
Tumor
0.1
395
Tumor
0.1
357
Tumor
0.1
497
Tumor
0.1
615
Tumor
0.1
722
Normal
0.1
557
Tumor
0.1
513
Tumor
0.1
715
Tumor
0.1
467
Tumor
0.1
785
Tumor
0.1
361
Tumor
0.1
426
Normal
0.0
471
Tumor
0.0
384
Normal
0.0
1045
Tumor
0.0
981
Tumor
0.0
627
Tumor
0.0
663
Tumor
0.0
1015
Tumor
0.0
814
Normal
0.0
424
Normal
0.0
388
Normal
0.0
195
Tumor
0.0
422
Normal
0.0
545
Tumor
0.0
191
Tumor
0.0
355
Tumor
0.0
433
Tumor
0.0
451
Tumor
0.0
435
Tumor
0.0
186
Normal
0.0
343
Tumor
0.0
383
Tumor
0.0
465
Tumor
0.0
911
Tumor
0.0
185
Tumor
0.0
135
Tumor
0.0
421
Tumor
0.0
963
Tumor
0.0
641
Tumor
0.0
344
Normal
0.0
375
Tumor
0.0
744
Normal
0.0
222
Normal
0.0
636
Normal
0.0
431
Tumor
0.0
354
Normal
-0.1
813
Tumor
-0.1
365
Tumor
-0.1
491
Tumor
-0.1
915
Tumor
-0.1
443
Tumor
-0.1
313
Tumor
-0.1
975
Tumor
-0.1
858
Normal
-0.1
432
Normal
-0.1
125
Tumor
-0.1
713
Tumor
-0.1
396
Normal
-0.1
342
Normal
-0.1
672
Normal
-0.1
341
Tumor
-0.1
563
Tumor
-0.1
824
Normal
-0.1
571
Tumor
-0.1
283
Tumor
-0.1
1032
Normal
-0.1
415
Tumor
-0.1
745
Tumor
-0.1
648
Normal
-0.1
356
Normal
-0.1
863
Tumor
-0.1
881
Tumor
-0.1
664
Normal
-0.1
162
Normal
-0.1
286
Normal
-0.1
172
Normal
-0.1
558
Normal
-0.1
616
Normal
-0.1
352
Normal
-0.1
628
Normal
-0.1
455
Tumor
-0.1
966
Normal
-0.1
777
Tumor
-0.1
386
Normal
-0.1
866
Normal
-0.1
332
Normal
-0.1
366
Normal
-0.2
368
Normal
-0.2
218
Normal
-0.2
327
Tumor
-0.2
261
Tumor
-0.2
488
Normal
-0.2
818
Normal
-0.2
536
Normal
-0.2
618
Normal
-0.2
534
Normal
-0.2
223
Tumor
-0.2
314
Normal
-0.2
662
Normal
-0.2
546
Normal
-0.2
392
Normal
-0.2
482
Normal
-0.2
196
Normal
-0.2
923
Tumor
-0.2
446
Normal
-0.2
553
Tumor
-0.2
188
Normal
-0.2
922
Normal
-0.2
468
Normal
-0.2
358
Normal
-0.2
721
Tumor
-0.2
416
Normal
-0.2
714
Normal
-0.2
666
Normal
-0.2
212
Normal
-0.2
572
Normal
-0.2
445
Tumor
-0.2
523
Tumor
-0.2
823
Tumor
-0.2
192
Normal
-0.2
411
Tumor
-0.2
124
Normal
-0.2
214
Normal
-0.2
912
Normal
-0.2
376
Normal
-0.2
976
Normal
-0.2
917
Tumor
-0.2
857
Tumor
-0.2
456
Normal
-0.2
444
Normal
-0.2
864
Normal
-0.2
498
Normal
-0.2
642
Normal
-0.2
696
Normal
-0.2
478
Normal
-0.2
1027
Tumor
-0.2
921
Tumor
-0.2
515
Tumor
-0.2
943
Tumor
-0.2
412
Normal
-0.2
448
Normal
-0.2
271
Tumor
-0.2
472
Normal
-0.2
364
Normal
-0.2
1022
Normal
-0.3
738
Normal
-0.3
362
Normal
-0.3
148
Normal
-0.3
224
Normal
-0.3
756
Normal
-0.3
328
Normal
-0.3
1026
Normal
-0.3
466
Normal
-0.3
298
Normal
-0.3
481
Tumor
-0.3
554
Normal
-0.3
436
Normal
-0.3
452
Normal
-0.3
278
Normal
-0.3
524
Normal
-0.3
1028
Normal
-0.3
937
Tumor
-0.3
228
Normal
-0.3
147
Tumor
-0.3
311
Tumor
-0.3
128
Normal
-0.3
958
Normal
-0.3
964
Normal
-0.3
868
Normal
-0.3
1014
Normal
-0.3
434
Normal
-0.3
145
Tumor
-0.3
487
Tumor
-0.3
284
Normal
-0.3
474
Normal
-0.3
564
Normal
-0.3
862
Normal
-0.3
533
Tumor
-0.3
914
Normal
-0.3
393
Tumor
-0.3
1043
Tumor
-0.3
1042
Normal
-0.3
464
Normal
-0.3
695
Tumor
-0.3
568
Normal
-0.3
686
Normal
-0.3
968
Normal
-0.3
926
Normal
-0.3
528
Normal
-0.3
778
Normal
-0.3
142
Normal
-0.3
297
Tumor
-0.3
484
Normal
-0.3
978
Normal
-0.3
746
Normal
-0.3
312
Normal
-0.3
137
Tumor
-0.3
944
Normal
-0.3
938
Normal
-0.3
955
Tumor
-0.3
852
Normal
-0.4
617
Tumor
-0.4
716
Normal
-0.4
461
Tumor
-0.4
954
Normal
-0.4
463
Tumor
-0.4
146
Normal
-0.4
574
Normal
-0.4
526
Normal
-0.4
924
Normal
-0.4
518
Normal
-0.4
786
Normal
-0.4
982
Normal
-0.4
874
Normal
-0.4
538
Normal
-0.4
1046
Normal
-0.4
878
Normal
-0.4
111
Normal
-0.4
277
Tumor
-0.4
742
Normal
-0.4
916
Normal
-0.4
514
Normal
-0.4
141
Tumor
-0.4
126
Normal
-0.4
984
Normal
-0.4
232
Normal
-0.4
231
Tumor
-0.4
816
Normal
-0.4
1044
Normal
-0.4
257
Tumor
-0.4
1016
Normal
-0.4
492
Normal
-0.4
516
Normal
-0.4
884
Normal
-0.4
494
Normal
-0.4
114
Normal
-0.4
952
Normal
-0.4
698
Normal
-0.4
161
Tumor
-0.4
728
Normal
-0.5
462
Normal
-0.5
953
Tumor
-0.5
956
Normal
-0.5
918
Normal
-0.5
882
Normal
-0.5
723
Tumor
-0.5
527
Tumor
-0.5
138
Normal
-0.5
262
Normal
-0.6
272
Normal
-0.6
132
Normal
-0.6
258
Normal
-0.6
136
Normal
-0.6
268
Normal
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
