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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRMT1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
48.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
345.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
267.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
265.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
199.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
188.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
168.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
168.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
159.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
154.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
146.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
145.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
135.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
130.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
122.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
118.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
115.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
113.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
110.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
107.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
106.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
103.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
103.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
101.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
99.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
97.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
95.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
92.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
92.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
91.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
90.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
89.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
89.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
89.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
88.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
88.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
87.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
87.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
86.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
85.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
85.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
85.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
84.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
83.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
82.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
80.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
78.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
78.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
76.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
76.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
75.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
74.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
74.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
72.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
72.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
70.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
69.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
69.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
69.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
67.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
67.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
66.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
65.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
65.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
64.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
64.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
63.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
63.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
62.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
62.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
61.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
61.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
61.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
60.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
59.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
59.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
59.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
59.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
58.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
58.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
58.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
58.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
58.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
58.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
57.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
57.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
57.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
56.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
56.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
56.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
56.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
56.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
55.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
54.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
54.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
54.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
53.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
53.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
53.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
53.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
53.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
52.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
52.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
52.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
52.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
52.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
51.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
51.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
51.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
50.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
50.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
50.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
50.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
49.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
49.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
49.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
49.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
49.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
48.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
48.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
48.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
48.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
47.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
47.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
46.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
46.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
46.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
46.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
46.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
46.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
45.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
45.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
44.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
44.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
44.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
44.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
44.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
44.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
43.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
43.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
43.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
43.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
42.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
42.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
42.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
42.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
42.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
42.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
42.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
41.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
41.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
41.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
41.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
41.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
41.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
41.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
41.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
41.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
41.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
41.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
40.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
40.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
40.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
40.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
40.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
40.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
40.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
40.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
40.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
40.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
40.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
39.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
39.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
39.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
39.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
39.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
39.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
39.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
39.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
39.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
39.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
39.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
38.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
38.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
38.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
38.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
38.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
38.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
37.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
37.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
37.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
37.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
37.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
37.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
37.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
37.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
37.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
37.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
36.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
36.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
36.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
36.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
36.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
36.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
36.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
36.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
36.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
36.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
36.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
36.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
35.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
35.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
35.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
35.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
35.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
35.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
35.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
35.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
35.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
34.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
34.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
34.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
34.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
34.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
33.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
33.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
33.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
33.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
33.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
32.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
32.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
32.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
32.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
32.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
32.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
32.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
32.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
31.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
31.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
31.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
31.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
31.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
31.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
30.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
30.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
30.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
30.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
30.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
30.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
30.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
30.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
30.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
30.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
30.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
30.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
30.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
29.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
29.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
29.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
29.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
29.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
29.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
29.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
29.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
28.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
28.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
28.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
28.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
28.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
28.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
28.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
28.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
28.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
27.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
27.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
27.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
27.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
27.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
27.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
27.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
26.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
26.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
26.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
26.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
26.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
26.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
26.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
26.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
26.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
25.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
25.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
25.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
24.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
24.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
24.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
24.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
23.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
22.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
22.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
21.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
21.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
21.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
21.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
21.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
20.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
19.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
19.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
19.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
19.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
18.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
18.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
16.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRMT1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.8
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
329.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
138.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
138.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
137.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
137.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
136.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
131.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
129.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
125.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
118.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
113.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
104.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
104.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
103.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
103.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
102.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
95.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
91.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
90.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
90.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
90.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
87.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
84.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
84.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
83.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
83.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
83.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
80.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
80.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
79.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
77.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
75.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
73.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
72.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
72.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
72.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
71.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
70.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
67.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
65.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
65.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
65.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
65.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
65.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
61.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
60.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
57.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
56.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
56.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
56.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
55.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
55.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
54.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
54.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
54.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
54.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
54.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
53.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
52.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
52.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
51.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
51.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
50.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
50.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
50.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
50.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
49.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
49.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
48.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
48.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
48.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
48.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
47.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
47.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
46.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
46.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
46.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
46.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
46.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
46.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
45.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
45.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
45.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
44.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
44.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
44.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
44.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
43.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
43.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
42.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
42.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
41.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
41.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
41.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
40.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
40.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
40.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
39.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
39.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
39.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
39.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
39.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
38.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
38.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
38.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
38.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
38.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
38.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
38.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
38.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
37.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
37.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
37.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
37.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
37.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
37.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
36.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
36.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
36.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
36.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
36.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
35.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
35.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
35.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
34.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
34.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
34.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
34.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
34.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
33.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
33.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
33.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
33.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
33.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
33.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
33.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
33.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
33.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
33.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
33.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
32.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
32.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
32.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
32.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
31.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
31.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
31.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
31.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
31.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
31.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
31.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
30.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
30.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
30.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
30.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
29.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
29.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
29.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
29.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
29.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
29.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
29.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
28.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
28.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
28.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
28.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
28.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
28.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
27.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
27.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
27.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
27.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
26.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
26.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
26.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
26.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
26.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
26.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
26.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
25.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
24.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
24.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
23.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
23.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
22.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
22.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
21.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
20.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
20.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
20.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
19.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
983
Tumor
1.5
285
Tumor
1.5
661
Tumor
1.4
567
Tumor
1.3
131
Tumor
1.1
413
Tumor
1.1
967
Tumor
1.0
815
Tumor
0.9
965
Tumor
0.9
517
Tumor
0.9
331
Tumor
0.8
877
Tumor
0.8
917
Tumor
0.8
385
Tumor
0.8
537
Tumor
0.7
545
Tumor
0.7
283
Tumor
0.7
535
Tumor
0.7
743
Tumor
0.7
425
Tumor
0.7
363
Tumor
0.6
881
Tumor
0.6
497
Tumor
0.6
447
Tumor
0.6
851
Tumor
0.6
351
Tumor
0.5
1015
Tumor
0.5
211
Tumor
0.5
943
Tumor
0.5
713
Tumor
0.5
311
Tumor
0.5
963
Tumor
0.5
277
Tumor
0.5
951
Tumor
0.4
573
Tumor
0.4
715
Tumor
0.4
297
Tumor
0.4
913
Tumor
0.4
937
Tumor
0.4
473
Tumor
0.4
367
Tumor
0.4
724
Normal
0.4
817
Tumor
0.4
525
Tumor
0.4
463
Tumor
0.4
975
Tumor
0.4
727
Tumor
0.4
147
Tumor
0.4
745
Tumor
0.4
671
Tumor
0.4
1021
Tumor
0.4
395
Tumor
0.4
957
Tumor
0.3
737
Tumor
0.3
393
Tumor
0.3
433
Tumor
0.3
536
Normal
0.3
112
Tumor
0.3
533
Tumor
0.3
391
Tumor
0.3
421
Tumor
0.3
1031
Tumor
0.3
213
Tumor
0.3
865
Tumor
0.3
455
Tumor
0.3
113
Tumor
0.3
123
Tumor
0.3
125
Tumor
0.3
647
Tumor
0.2
755
Tumor
0.2
427
Tumor
0.2
1013
Tumor
0.2
217
Tumor
0.2
1025
Tumor
0.2
387
Tumor
0.2
227
Tumor
0.2
223
Tumor
0.2
411
Tumor
0.2
663
Tumor
0.2
527
Tumor
0.2
461
Tumor
0.2
257
Tumor
0.2
435
Tumor
0.2
921
Tumor
0.2
923
Tumor
0.2
343
Tumor
0.1
515
Tumor
0.1
467
Tumor
0.1
491
Tumor
0.1
231
Tumor
0.1
635
Tumor
0.1
327
Tumor
0.1
492
Normal
0.1
977
Tumor
0.1
814
Normal
0.1
916
Normal
0.1
695
Tumor
0.1
861
Tumor
0.1
665
Tumor
0.1
553
Tumor
0.0
341
Tumor
0.0
883
Tumor
0.0
685
Tumor
0.0
483
Tumor
0.0
966
Normal
0.0
185
Tumor
0.0
493
Tumor
0.0
697
Tumor
0.0
357
Tumor
0.0
523
Tumor
0.0
191
Tumor
0.0
477
Tumor
0.0
127
Tumor
0.0
195
Tumor
0.0
267
Tumor
0.0
141
Tumor
0.0
1027
Tumor
0.0
478
Normal
0.0
271
Tumor
0.0
375
Tumor
0.0
513
Tumor
0.0
823
Tumor
0.0
813
Tumor
0.0
187
Tumor
0.0
721
Tumor
0.0
451
Tumor
0.0
785
Tumor
-0.1
538
Normal
-0.1
192
Normal
-0.1
741
Tumor
-0.1
353
Tumor
-0.1
777
Tumor
-0.1
355
Tumor
-0.1
221
Tumor
-0.1
571
Tumor
-0.1
857
Tumor
-0.1
356
Normal
-0.1
1041
Tumor
-0.1
444
Normal
-0.1
434
Normal
-0.1
412
Normal
-0.1
557
Tumor
-0.1
145
Tumor
-0.1
268
Normal
-0.1
1043
Tumor
-0.2
445
Tumor
-0.2
873
Tumor
-0.2
284
Normal
-0.2
953
Tumor
-0.2
124
Normal
-0.2
126
Normal
-0.2
135
Tumor
-0.2
471
Tumor
-0.2
863
Tumor
-0.2
383
Tumor
-0.2
415
Tumor
-0.2
524
Normal
-0.2
498
Normal
-0.2
968
Normal
-0.2
852
Normal
-0.2
554
Normal
-0.2
328
Normal
-0.2
955
Tumor
-0.2
364
Normal
-0.2
474
Normal
-0.2
465
Tumor
-0.2
918
Normal
-0.2
563
Tumor
-0.2
1028
Normal
-0.2
416
Normal
-0.2
394
Normal
-0.2
824
Normal
-0.2
641
Tumor
-0.2
925
Tumor
-0.2
212
Normal
-0.2
944
Normal
-0.2
915
Tumor
-0.2
1045
Tumor
-0.2
516
Normal
-0.2
858
Normal
-0.2
423
Tumor
-0.2
686
Normal
-0.2
738
Normal
-0.2
976
Normal
-0.2
386
Normal
-0.2
867
Tumor
-0.2
938
Normal
-0.2
952
Normal
-0.2
648
Normal
-0.2
344
Normal
-0.2
388
Normal
-0.2
392
Normal
-0.3
432
Normal
-0.3
816
Normal
-0.3
956
Normal
-0.3
696
Normal
-0.3
728
Normal
-0.3
261
Tumor
-0.3
878
Normal
-0.3
964
Normal
-0.3
481
Tumor
-0.3
924
Normal
-0.3
332
Normal
-0.3
262
Normal
-0.3
214
Normal
-0.3
142
Normal
-0.3
958
Normal
-0.3
662
Normal
-0.3
361
Tumor
-0.3
431
Tumor
-0.3
786
Normal
-0.3
546
Normal
-0.3
558
Normal
-0.3
954
Normal
-0.3
446
Normal
-0.3
574
Normal
-0.3
286
Normal
-0.3
137
Tumor
-0.3
1016
Normal
-0.3
518
Normal
-0.3
188
Normal
-0.3
352
Normal
-0.3
436
Normal
-0.3
818
Normal
-0.3
114
Normal
-0.3
981
Tumor
-0.3
472
Normal
-0.3
482
Normal
-0.3
912
Normal
-0.3
914
Normal
-0.3
922
Normal
-0.3
778
Normal
-0.3
666
Normal
-0.3
568
Normal
-0.3
526
Normal
-0.3
136
Normal
-0.3
1026
Normal
-0.3
978
Normal
-0.3
984
Normal
-0.3
396
Normal
-0.3
572
Normal
-0.3
111
Normal
-0.3
228
Normal
-0.3
884
Normal
-0.3
218
Normal
-0.3
128
Normal
-0.3
422
Normal
-0.3
744
Normal
-0.3
171
Tumor
-0.3
534
Normal
-0.3
146
Normal
-0.3
494
Normal
-0.3
664
Normal
-0.4
926
Normal
-0.4
488
Normal
-0.4
278
Normal
-0.4
298
Normal
-0.4
224
Normal
-0.4
313
Tumor
-0.4
132
Normal
-0.4
742
Normal
-0.4
617
Tumor
-0.4
564
Normal
-0.4
874
Normal
-0.4
866
Normal
-0.4
1044
Normal
-0.4
484
Normal
-0.4
424
Normal
-0.4
982
Normal
-0.4
272
Normal
-0.4
466
Normal
-0.4
746
Normal
-0.4
672
Normal
-0.4
448
Normal
-0.4
354
Normal
-0.4
911
Tumor
-0.4
365
Tumor
-0.4
1014
Normal
-0.4
514
Normal
-0.4
462
Normal
-0.4
487
Tumor
-0.4
716
Normal
-0.4
314
Normal
-0.4
196
Normal
-0.4
161
Tumor
-0.4
868
Normal
-0.4
723
Tumor
-0.4
312
Normal
-0.4
358
Normal
-0.4
414
Normal
-0.4
882
Normal
-0.4
138
Normal
-0.4
342
Normal
-0.4
864
Normal
-0.4
1042
Normal
-0.4
456
Normal
-0.4
464
Normal
-0.4
756
Normal
-0.4
722
Normal
-0.4
1022
Normal
-0.4
528
Normal
-0.4
443
Tumor
-0.4
376
Normal
-0.4
627
Tumor
-0.5
162
Normal
-0.5
384
Normal
-0.5
428
Normal
-0.5
426
Normal
-0.5
258
Normal
-0.5
1032
Normal
-0.5
362
Normal
-0.5
698
Normal
-0.5
628
Normal
-0.5
172
Normal
-0.5
366
Normal
-0.5
222
Normal
-0.5
714
Normal
-0.5
232
Normal
-0.5
862
Normal
-0.5
468
Normal
-0.6
368
Normal
-0.6
148
Normal
-0.6
618
Normal
-0.6
452
Normal
-0.6
615
Tumor
-0.6
186
Normal
-0.6
1046
Normal
-0.7
616
Normal
-0.7
642
Normal
-0.7
636
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
