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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BCL2L12 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
99.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
76.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
75.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
71.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
70.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
64.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
64.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
59.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
53.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
52.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
50.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
48.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
48.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
47.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
44.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
43.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
43.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
43.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
43.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
43.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
42.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
42.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
41.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
41.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
41.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
40.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
39.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
39.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
37.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
37.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
37.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
36.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
36.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
35.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
35.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
35.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
35.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
33.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
33.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
32.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
32.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
31.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
31.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
31.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
30.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
30.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
30.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
29.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
28.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
28.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
26.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
26.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
26.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
26.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
26.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
25.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
25.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
25.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
25.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
24.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
24.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
24.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
23.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
23.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
23.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
23.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
23.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
23.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
23.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
23.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
23.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
23.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
23.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
22.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
22.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
22.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
22.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
22.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
22.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
21.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
21.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
21.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
21.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
21.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
20.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
20.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
19.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
19.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
19.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
18.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
18.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BCL2L12 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
31.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
31.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
29.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
26.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
22.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
125
Tumor
3.1
257
Tumor
2.5
313
Tumor
2.1
491
Tumor
1.9
285
Tumor
1.7
557
Tumor
1.3
527
Tumor
1.3
221
Tumor
1.1
745
Tumor
1.0
573
Tumor
1.0
553
Tumor
1.0
943
Tumor
1.0
213
Tumor
1.0
983
Tumor
0.9
283
Tumor
0.9
1043
Tumor
0.9
713
Tumor
0.9
297
Tumor
0.8
477
Tumor
0.8
126
Normal
0.8
953
Tumor
0.8
481
Tumor
0.8
641
Tumor
0.7
517
Tumor
0.7
217
Tumor
0.7
917
Tumor
0.7
136
Normal
0.7
311
Tumor
0.7
145
Tumor
0.7
327
Tumor
0.7
857
Tumor
0.7
231
Tumor
0.7
132
Normal
0.7
223
Tumor
0.6
343
Tumor
0.6
473
Tumor
0.6
923
Tumor
0.6
737
Tumor
0.6
724
Normal
0.6
661
Tumor
0.6
195
Tumor
0.6
861
Tumor
0.5
146
Normal
0.5
545
Tumor
0.5
813
Tumor
0.5
498
Normal
0.5
142
Normal
0.5
171
Tumor
0.5
635
Tumor
0.5
261
Tumor
0.4
977
Tumor
0.4
627
Tumor
0.4
131
Tumor
0.4
138
Normal
0.4
697
Tumor
0.4
192
Normal
0.4
741
Tumor
0.4
814
Normal
0.3
141
Tumor
0.3
867
Tumor
0.3
187
Tumor
0.3
616
Normal
0.3
147
Tumor
0.3
537
Tumor
0.3
162
Normal
0.3
817
Tumor
0.2
1015
Tumor
0.2
525
Tumor
0.2
284
Normal
0.2
445
Tumor
0.2
647
Tumor
0.2
957
Tumor
0.2
484
Normal
0.2
944
Normal
0.2
617
Tumor
0.2
421
Tumor
0.2
636
Normal
0.2
227
Tumor
0.2
286
Normal
0.2
224
Normal
0.2
642
Normal
0.1
648
Normal
0.1
518
Normal
0.1
478
Normal
0.1
567
Tumor
0.1
341
Tumor
0.1
211
Tumor
0.1
185
Tumor
0.1
721
Tumor
0.1
975
Tumor
0.1
123
Tumor
0.1
755
Tumor
0.1
188
Normal
0.1
956
Normal
0.1
664
Normal
0.1
558
Normal
0.1
172
Normal
0.1
471
Tumor
0.1
672
Normal
0.1
228
Normal
0.1
823
Tumor
0.1
212
Normal
0.1
515
Tumor
0.1
978
Normal
0.0
461
Tumor
0.0
137
Tumor
0.0
615
Tumor
0.0
666
Normal
0.0
1014
Normal
0.0
628
Normal
0.0
462
Normal
0.0
513
Tumor
0.0
662
Normal
0.0
214
Normal
0.0
114
Normal
0.0
493
Tumor
0.0
488
Normal
0.0
124
Normal
-0.1
351
Tumor
-0.1
161
Tumor
-0.1
954
Normal
-0.1
186
Normal
-0.1
148
Normal
-0.1
492
Normal
-0.1
474
Normal
-0.1
1016
Normal
-0.1
526
Normal
-0.1
353
Tumor
-0.1
113
Tumor
-0.1
982
Normal
-0.1
494
Normal
-0.1
671
Tumor
-0.1
191
Tumor
-0.1
128
Normal
-0.1
618
Normal
-0.1
222
Normal
-0.1
984
Normal
-0.1
685
Tumor
-0.1
981
Tumor
-0.1
738
Normal
-0.1
135
Tumor
-0.1
482
Normal
-0.2
314
Normal
-0.2
665
Tumor
-0.2
966
Normal
-0.2
568
Normal
-0.2
472
Normal
-0.2
342
Normal
-0.2
487
Tumor
-0.2
564
Normal
-0.2
352
Normal
-0.2
955
Tumor
-0.2
111
Normal
-0.2
663
Tumor
-0.2
952
Normal
-0.2
344
Normal
-0.2
563
Tumor
-0.2
851
Tumor
-0.2
516
Normal
-0.2
915
Tumor
-0.3
523
Tumor
-0.3
414
Normal
-0.3
815
Tumor
-0.3
572
Normal
-0.3
912
Normal
-0.3
514
Normal
-0.3
1013
Tumor
-0.3
357
Tumor
-0.3
358
Normal
-0.3
574
Normal
-0.3
528
Normal
-0.3
858
Normal
-0.3
524
Normal
-0.4
354
Normal
-0.4
816
Normal
-0.4
852
Normal
-0.4
218
Normal
-0.4
196
Normal
-0.4
777
Tumor
-0.4
976
Normal
-0.4
965
Tumor
-0.4
785
Tumor
-0.4
571
Tumor
-0.4
538
Normal
-0.4
536
Normal
-0.4
447
Tumor
-0.5
112
Tumor
-0.5
824
Normal
-0.5
722
Normal
-0.5
332
Normal
-0.5
921
Tumor
-0.5
877
Tumor
-0.5
818
Normal
-0.5
483
Tumor
-0.5
497
Tumor
-0.5
778
Normal
-0.6
546
Normal
-0.6
728
Normal
-0.6
416
Normal
-0.6
415
Tumor
-0.6
967
Tumor
-0.6
926
Normal
-0.6
278
Normal
-0.6
554
Normal
-0.7
958
Normal
-0.7
363
Tumor
-0.7
331
Tumor
-0.7
938
Normal
-0.7
698
Normal
-0.7
355
Tumor
-0.7
428
Normal
-0.7
924
Normal
-0.7
1044
Normal
-0.8
422
Normal
-0.8
968
Normal
-0.8
963
Tumor
-0.8
916
Normal
-0.8
756
Normal
-0.8
427
Tumor
-0.8
534
Normal
-0.8
535
Tumor
-0.8
424
Normal
-0.8
913
Tumor
-0.8
727
Tumor
-0.8
267
Tumor
-0.9
268
Normal
-0.9
746
Normal
-0.9
448
Normal
-0.9
743
Tumor
-0.9
964
Normal
-0.9
696
Normal
-0.9
312
Normal
-0.9
364
Normal
-0.9
922
Normal
-0.9
937
Tumor
-0.9
914
Normal
-0.9
918
Normal
-0.9
884
Normal
-0.9
262
Normal
-0.9
863
Tumor
-1.0
742
Normal
-1.0
911
Tumor
-1.0
328
Normal
-1.0
723
Tumor
-1.1
412
Normal
-1.1
356
Normal
-1.1
443
Tumor
-1.1
426
Normal
-1.1
786
Normal
-1.1
868
Normal
-1.1
425
Tumor
-1.1
413
Tumor
-1.2
411
Tumor
-1.3
951
Tumor
-1.3
864
Normal
-1.3
1045
Tumor
-1.3
1046
Normal
-1.3
423
Tumor
-1.4
298
Normal
-1.4
866
Normal
-1.4
533
Tumor
-1.4
744
Normal
-1.5
882
Normal
-1.5
686
Normal
-1.5
874
Normal
-1.5
271
Tumor
-1.5
883
Tumor
-1.5
714
Normal
-1.5
433
Tumor
-1.5
272
Normal
-1.6
444
Normal
-1.6
446
Normal
-1.6
716
Normal
-1.6
232
Normal
-1.6
277
Tumor
-1.6
865
Tumor
-1.7
862
Normal
-1.8
127
Tumor
-1.8
881
Tumor
-2.0
873
Tumor
-2.0
878
Normal
-2.0
434
Normal
-2.0
695
Tumor
-2.1
431
Tumor
-2.2
715
Tumor
-2.2
925
Tumor
-2.6
432
Normal
-2.7
436
Normal
-2.9
435
Tumor
-3.0
361
Tumor
N/A
362
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
258
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
388
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
451
Tumor
N/A
452
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
463
Tumor
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
