MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.1 nTPM
HPA Brain:40.4 nTPM
GTEx:44.1 nTPM
FANTOM5:94.2 Scaled Tags Per Million
Mouse:77.6 nTPM
Allen mouse:5.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 40.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.4
1870 Female, age 42, unknown 37.7
2666 Male, age 74, left hemisphere 37.7
2019 Male, age 18, unknown 34.4
1827 Male, age 72, unknown 32.2
2586 Male, age 75, left hemisphere 31.9
1830 Male, age 51, unknown 31.8
1833 Male, age 53, unknown 31.8
2411 Female, age 72, unknown 31.1
2219 Male, age 76, both hemispheres 29.6
2828 Female, age 72, unknown 25.9
Dorsal raphe nucleus
nTPM: 31.4
2298 Female, age 72, unknown 33.7
2047 Male, age 72, unknown 32.0
2750 Male, age 76, both hemispheres 31.6
2016 Female, age 72, unknown 30.6
1828 Male, age 53, unknown 29.3
Inferior colliculus
nTPM: 33.0
2097 Female, age 72, unknown 35.1
2849 Male, age 72, unknown 33.5
1848 Female, age 42, unknown 32.0
1890 Male, age 53, unknown 31.4
Median raphe nucleus
nTPM: 40.4
2220 Male, age 76, midline 40.4
Periaquaductal grey, anterior
nTPM: 32.3
1947 Male, age 18, unknown 34.6
2502 Female, age 75, unknown 33.8
1795 Male, age 51, unknown 28.6
Periaquaductal grey, dorsal
nTPM: 33.9
2850 Male, age 76, both hemispheres 38.0
1831 Male, age 72, unknown 34.2
1840 Male, age 53, unknown 33.6
2464 Female, age 72, unknown 29.8
Periaquaductal grey, lateral
nTPM: 29.2
2140 Male, age 76, both hemispheres 30.5
2053 Male, age 18, unknown 30.3
2272 Male, age 74, both hemispheres 26.7
Pretectal area
nTPM: 32.9
1944 Female, age 72, unknown 38.3
2224 Female, age 72, unknown 37.1
2825 Male, age 18, unknown 35.4
1816 Male, age 51, unknown 34.3
1815 Male, age 53, unknown 33.1
1817 Female, age 42, unknown 33.0
2007 Male, age 72, unknown 32.5
2316 Male, age 76, right hemisphere 30.5
2667 Female, age 75, unknown 29.7
2273 Male, age 74, both hemispheres 28.8
2407 Male, age 75, both hemispheres 28.6
Red nucleus
nTPM: 33.8
1821 Female, age 72, unknown 42.2
1954 Female, age 42, unknown 37.9
1904 Male, age 53, unknown 37.0
1865 Male, age 51, unknown 36.4
2503 Female, age 72, unknown 34.8
2725 Female, age 75, unknown 33.5
2588 Male, age 74, left hemisphere 33.1
2769 Male, age 72, unknown 31.4
2227 Male, age 72, unknown 30.9
2823 Male, age 76, right hemisphere 30.6
2584 Male, age 75, left hemisphere 30.1
2785 Male, age 18, unknown 28.2
Substantia nigra
nTPM: 35.2
2241 Male, age 72, unknown 45.7
1916 Female, age 42, unknown 41.2
1851 Male, age 51, unknown 37.2
2665 Male, age 74, both hemispheres 36.3
1889 Female, age 72, unknown 36.0
1941 Male, age 53, unknown 34.0
2699 Male, age 18, unknown 33.5
2583 Male, age 75, right hemisphere 31.2
2590 Female, age 75, unknown 28.8
2409 Female, age 72, unknown 28.4
Superior colliculus
nTPM: 32.7
2668 Female, age 75, unknown 41.4
1796 Male, age 53, unknown 35.9
2587 Male, age 74, left hemisphere 35.0
2087 Female, age 72, unknown 34.5
1913 Female, age 42, unknown 31.7
2261 Male, age 18, unknown 31.3
1895 Male, age 76, right hemisphere 31.0
1839 Male, age 51, unknown 30.1
2664 Male, age 75, both hemispheres 28.1
1995 Male, age 72, unknown 27.9
Ventral tegmental area
nTPM: 34.6
1915 Female, age 42, unknown 36.2
2218 Male, age 76, both hemispheres 35.7
1942 Male, age 51, unknown 35.2
2223 Female, age 72, unknown 35.1
2021 Male, age 53, unknown 33.0
2410 Female, age 72, unknown 32.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 44.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.1
Samples: 139

Max nTPM: 69.1
Min nTPM: 29.9
Std nTPM: 6.3
Median nTPM: 43.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 69.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 64.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 63.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 60.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 59.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 58.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 57.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 54.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 53.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 52.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 52.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 94.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.2
FF:10158-103A5 76 years, female 94.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 77.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 77.6
Samples: 4

Max nTPM: 78.3
Min nTPM: 76.8
Sample A Male 78.0
Sample B Male 78.3
Sample C Female 77.4
Sample D Female 76.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.1
69817061 Antisense, RP_050510_02_E08, Mouse strain C57BL/6J (56 days, male) 5.1

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