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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RBM42 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
57.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
315.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
289.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
209.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
177.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
150.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
140.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
139.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
136.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
131.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
127.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
120.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
120.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
117.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
117.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
112.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
111.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
111.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
110.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
105.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
105.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
105.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
104.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
102.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
100.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
96.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
96.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
93.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
91.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
90.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
89.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
86.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
86.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
85.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
84.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
84.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
84.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
83.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
82.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
82.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
81.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
81.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
80.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
80.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
80.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
80.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
77.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
77.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
76.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
76.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
75.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
75.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
75.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
75.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
75.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
75.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
74.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
74.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
74.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
73.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
73.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
72.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
72.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
72.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
72.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
72.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
71.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
71.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
70.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
69.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
69.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
69.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
69.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
69.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
69.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
69.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
69.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
69.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
69.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
68.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
68.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
68.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
67.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
67.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
67.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
67.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
66.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
66.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
66.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
66.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
66.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
65.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
65.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
65.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
65.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
65.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
65.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
65.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
65.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
64.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
64.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
64.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
63.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
63.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
63.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
63.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
63.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
63.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
62.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
62.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
62.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
62.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
61.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
61.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
61.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
61.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
61.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
61.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
60.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
60.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
60.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
59.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
59.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
59.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
59.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
59.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
59.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
59.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
59.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
59.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
58.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
58.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
58.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
57.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
57.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
57.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
57.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
57.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
57.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
56.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
56.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
56.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
56.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
56.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
55.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
55.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
55.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
55.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
55.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
55.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
55.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
55.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
54.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
54.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
54.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
54.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
54.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
54.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
54.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
54.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
54.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
54.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
54.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
54.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
54.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
54.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
53.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
53.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
53.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
53.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
53.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
53.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
53.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
53.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
52.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
52.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
52.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
52.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
51.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
51.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
51.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
51.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
51.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
51.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
50.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
50.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
50.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
50.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
50.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
50.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
50.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
50.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
50.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
50.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
49.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
49.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
49.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
49.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
49.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
49.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
49.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
49.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
49.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
49.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
49.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
48.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
48.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
48.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
48.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
48.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
47.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
47.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
47.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
47.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
47.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
47.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
47.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
47.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
47.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
47.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
46.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
46.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
46.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
46.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
46.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
45.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
45.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
45.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
45.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
45.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
45.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
45.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
44.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
44.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
44.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
44.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
44.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
44.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
44.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
44.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
44.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
43.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
43.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
43.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
43.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
43.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
43.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
43.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
43.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
43.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
42.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
42.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
42.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
42.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
42.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
42.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
42.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
42.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
42.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
41.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
41.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
41.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
41.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
41.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
41.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
41.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
41.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
40.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
40.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
40.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
40.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
40.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
40.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
40.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
40.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
40.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
40.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
39.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
39.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
39.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
39.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
39.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
38.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
38.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
38.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
38.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
38.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
38.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
37.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
37.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
37.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
37.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
36.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
36.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
36.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
36.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
35.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
35.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
35.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
35.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
35.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
35.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
35.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
35.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
34.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
34.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
34.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
34.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
34.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
34.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
34.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
34.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
34.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
34.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
34.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
33.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
33.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
33.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
33.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
32.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
32.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
32.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
32.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
32.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
31.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
31.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
30.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
30.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
30.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
30.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
30.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
30.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
30.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
29.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
29.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
29.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
29.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
29.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
29.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
28.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
28.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
28.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
28.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
28.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
28.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
27.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
27.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
26.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
26.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
26.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
26.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
25.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
25.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
23.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
22.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
18.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RBM42 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.3
Number of samples
231
Samples
Sample
Description
TPM
DO23526
0 years, male, NA, stage:3, alive, 1050 days
82.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
81.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
74.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
73.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
70.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
66.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
64.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
62.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
62.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
62.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
61.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
61.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
60.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
60.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
59.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
59.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
58.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
58.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
57.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
56.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
54.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
54.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
54.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
52.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
52.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
51.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
51.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
50.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
50.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
49.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
48.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
48.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
48.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
48.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
48.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
48.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
47.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
46.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
46.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
46.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
46.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
45.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
44.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
44.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
44.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
44.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
44.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
44.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
44.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
43.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
43.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
42.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
42.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
42.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
42.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
42.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
42.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
42.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
42.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
42.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
41.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
41.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
41.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
41.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
40.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
40.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
40.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
39.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
39.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
39.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
39.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
39.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
39.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
38.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
38.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
38.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
38.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
38.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
38.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
37.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
37.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
37.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
37.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
37.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
37.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
36.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
36.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
36.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
36.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
36.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
36.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
36.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
36.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
36.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
36.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
35.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
35.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
35.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
35.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
35.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
35.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
34.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
34.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
34.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
34.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
34.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
34.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
33.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
33.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
33.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
33.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
33.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
33.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
33.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
33.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
33.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
33.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
32.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
32.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
32.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
32.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
32.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
32.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
31.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
31.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
31.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
30.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
30.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
30.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
30.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
29.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
29.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
29.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
29.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
28.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
28.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
28.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
28.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
28.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
28.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
28.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
28.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
28.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
28.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
27.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
27.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
27.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
27.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
27.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
27.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
27.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
26.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
26.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
26.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
26.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
26.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
25.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
25.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
25.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
24.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
24.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
24.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
24.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
24.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
24.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
24.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
24.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
23.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
23.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
23.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
22.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
22.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
21.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
21.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
21.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
20.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
20.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
18.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
1.3
695
Tumor
1.1
443
Tumor
1.0
661
Tumor
0.9
487
Tumor
0.9
112
Tumor
0.8
743
Tumor
0.7
123
Tumor
0.7
271
Tumor
0.7
331
Tumor
0.7
921
Tumor
0.7
517
Tumor
0.7
341
Tumor
0.6
671
Tumor
0.6
413
Tumor
0.6
647
Tumor
0.6
497
Tumor
0.6
1031
Tumor
0.6
221
Tumor
0.6
967
Tumor
0.5
131
Tumor
0.5
635
Tumor
0.5
285
Tumor
0.5
277
Tumor
0.5
983
Tumor
0.5
965
Tumor
0.5
1021
Tumor
0.4
975
Tumor
0.4
977
Tumor
0.4
463
Tumor
0.4
865
Tumor
0.4
431
Tumor
0.4
815
Tumor
0.4
817
Tumor
0.4
161
Tumor
0.4
957
Tumor
0.4
951
Tumor
0.4
365
Tumor
0.4
423
Tumor
0.4
523
Tumor
0.4
361
Tumor
0.4
357
Tumor
0.3
125
Tumor
0.3
393
Tumor
0.3
573
Tumor
0.3
665
Tumor
0.3
515
Tumor
0.3
715
Tumor
0.3
367
Tumor
0.3
231
Tumor
0.3
545
Tumor
0.3
213
Tumor
0.3
411
Tumor
0.3
663
Tumor
0.3
391
Tumor
0.3
387
Tumor
0.3
433
Tumor
0.3
313
Tumor
0.3
473
Tumor
0.3
342
Normal
0.3
813
Tumor
0.3
385
Tumor
0.3
465
Tumor
0.3
785
Tumor
0.3
351
Tumor
0.3
777
Tumor
0.2
427
Tumor
0.2
297
Tumor
0.2
141
Tumor
0.2
567
Tumor
0.2
445
Tumor
0.2
353
Tumor
0.2
354
Normal
0.2
217
Tumor
0.2
185
Tumor
0.2
477
Tumor
0.2
881
Tumor
0.2
124
Normal
0.2
435
Tumor
0.2
257
Tumor
0.2
355
Tumor
0.2
1025
Tumor
0.2
383
Tumor
0.2
375
Tumor
0.2
267
Tumor
0.2
467
Tumor
0.2
471
Tumor
0.2
1013
Tumor
0.2
135
Tumor
0.2
537
Tumor
0.2
461
Tumor
0.1
814
Normal
0.1
344
Normal
0.1
187
Tumor
0.1
744
Normal
0.1
111
Normal
0.1
127
Tumor
0.1
923
Tumor
0.1
358
Normal
0.1
227
Tumor
0.1
737
Tumor
0.1
943
Tumor
0.1
222
Normal
0.1
513
Tumor
0.1
451
Tumor
0.1
195
Tumor
0.1
147
Tumor
0.1
368
Normal
0.1
192
Normal
0.1
483
Tumor
0.1
211
Tumor
0.1
171
Tumor
0.1
755
Tumor
0.1
666
Normal
0.1
114
Normal
0.1
137
Tumor
0.1
524
Normal
0.1
571
Tumor
0.1
311
Tumor
0.1
421
Tumor
0.1
953
Tumor
0.1
721
Tumor
0.1
191
Tumor
0.1
395
Tumor
0.1
366
Normal
0.0
963
Tumor
0.0
877
Tumor
0.0
376
Normal
0.0
984
Normal
0.0
436
Normal
0.0
138
Normal
0.0
126
Normal
0.0
685
Tumor
0.0
1041
Tumor
0.0
352
Normal
0.0
224
Normal
0.0
132
Normal
0.0
396
Normal
0.0
455
Tumor
0.0
128
Normal
0.0
525
Tumor
0.0
456
Normal
0.0
823
Tumor
0.0
672
Normal
0.0
136
Normal
0.0
113
Tumor
0.0
384
Normal
0.0
1027
Tumor
0.0
362
Normal
0.0
286
Normal
0.0
937
Tumor
0.0
615
Tumor
0.0
146
Normal
0.0
284
Normal
0.0
553
Tumor
0.0
464
Normal
0.0
493
Tumor
0.0
444
Normal
0.0
1015
Tumor
0.0
386
Normal
0.0
533
Tumor
0.0
314
Normal
0.0
447
Tumor
0.0
218
Normal
0.0
268
Normal
0.0
883
Tumor
-0.1
867
Tumor
-0.1
145
Tumor
-0.1
394
Normal
-0.1
557
Tumor
-0.1
261
Tumor
-0.1
272
Normal
-0.1
741
Tumor
-0.1
641
Tumor
-0.1
627
Tumor
-0.1
148
Normal
-0.1
452
Normal
-0.1
911
Tumor
-0.1
188
Normal
-0.1
526
Normal
-0.1
662
Normal
-0.1
664
Normal
-0.1
162
Normal
-0.1
851
Tumor
-0.1
298
Normal
-0.1
196
Normal
-0.1
1043
Tumor
-0.1
392
Normal
-0.1
388
Normal
-0.1
262
Normal
-0.1
563
Tumor
-0.1
516
Normal
-0.1
514
Normal
-0.1
258
Normal
-0.1
214
Normal
-0.1
468
Normal
-0.1
343
Tumor
-0.1
527
Tumor
-0.1
716
Normal
-0.1
858
Normal
-0.1
434
Normal
-0.1
283
Tumor
-0.1
648
Normal
-0.1
498
Normal
-0.1
956
Normal
-0.1
518
Normal
-0.1
446
Normal
-0.1
312
Normal
-0.1
873
Tumor
-0.1
857
Tumor
-0.1
686
Normal
-0.1
142
Normal
-0.1
1032
Normal
-0.1
727
Tumor
-0.2
861
Tumor
-0.2
786
Normal
-0.2
978
Normal
-0.2
742
Normal
-0.2
535
Tumor
-0.2
186
Normal
-0.2
723
Tumor
-0.2
966
Normal
-0.2
745
Tumor
-0.2
913
Tumor
-0.2
363
Tumor
-0.2
232
Normal
-0.2
428
Normal
-0.2
492
Normal
-0.2
534
Normal
-0.2
228
Normal
-0.2
426
Normal
-0.2
746
Normal
-0.2
332
Normal
-0.2
1045
Tumor
-0.2
968
Normal
-0.2
415
Tumor
-0.2
926
Normal
-0.2
981
Tumor
-0.2
414
Normal
-0.2
466
Normal
-0.2
278
Normal
-0.2
874
Normal
-0.2
488
Normal
-0.2
738
Normal
-0.2
964
Normal
-0.2
572
Normal
-0.2
422
Normal
-0.2
1022
Normal
-0.2
944
Normal
-0.2
528
Normal
-0.2
328
Normal
-0.2
818
Normal
-0.2
714
Normal
-0.2
863
Tumor
-0.2
958
Normal
-0.2
172
Normal
-0.2
1028
Normal
-0.2
722
Normal
-0.2
481
Tumor
-0.2
824
Normal
-0.2
955
Tumor
-0.2
1046
Normal
-0.2
536
Normal
-0.2
696
Normal
-0.2
697
Tumor
-0.2
713
Tumor
-0.2
724
Normal
-0.2
954
Normal
-0.2
1014
Normal
-0.2
1026
Normal
-0.3
568
Normal
-0.3
1016
Normal
-0.3
915
Tumor
-0.3
938
Normal
-0.3
698
Normal
-0.3
472
Normal
-0.3
327
Tumor
-0.3
574
Normal
-0.3
491
Tumor
-0.3
484
Normal
-0.3
432
Normal
-0.3
538
Normal
-0.3
462
Normal
-0.3
914
Normal
-0.3
546
Normal
-0.3
478
Normal
-0.3
558
Normal
-0.3
982
Normal
-0.3
778
Normal
-0.3
494
Normal
-0.3
852
Normal
-0.3
925
Tumor
-0.3
474
Normal
-0.3
554
Normal
-0.3
424
Normal
-0.3
918
Normal
-0.3
924
Normal
-0.3
223
Tumor
-0.3
756
Normal
-0.3
416
Normal
-0.3
448
Normal
-0.4
482
Normal
-0.4
212
Normal
-0.4
728
Normal
-0.4
864
Normal
-0.4
617
Tumor
-0.4
862
Normal
-0.4
912
Normal
-0.4
868
Normal
-0.4
976
Normal
-0.4
952
Normal
-0.4
364
Normal
-0.4
866
Normal
-0.4
916
Normal
-0.4
816
Normal
-0.4
412
Normal
-0.4
616
Normal
-0.4
1044
Normal
-0.4
356
Normal
-0.4
922
Normal
-0.4
882
Normal
-0.4
878
Normal
-0.4
564
Normal
-0.4
642
Normal
-0.5
1042
Normal
-0.5
917
Tumor
-0.5
618
Normal
-0.5
628
Normal
-0.5
636
Normal
-0.5
884
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
