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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDCD2L is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
46.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
9.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
3.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDCD2L is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.3
Number of samples
231
Samples
Sample
Description
TPM
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
5.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
3.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
2.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
2.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
2.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
2.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
2.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
571
Tumor
1.1
661
Tumor
1.1
697
Tumor
1.1
1021
Tumor
1.1
367
Tumor
1.0
537
Tumor
1.0
387
Tumor
1.0
443
Tumor
1.0
671
Tumor
0.9
123
Tumor
0.9
951
Tumor
0.9
473
Tumor
0.9
391
Tumor
0.8
965
Tumor
0.8
351
Tumor
0.8
881
Tumor
0.8
635
Tumor
0.8
297
Tumor
0.8
567
Tumor
0.8
695
Tumor
0.8
231
Tumor
0.8
331
Tumor
0.7
395
Tumor
0.7
525
Tumor
0.7
533
Tumor
0.7
724
Normal
0.7
361
Tumor
0.7
743
Tumor
0.7
483
Tumor
0.7
444
Normal
0.7
357
Tumor
0.7
267
Tumor
0.7
171
Tumor
0.6
917
Tumor
0.6
463
Tumor
0.6
433
Tumor
0.6
446
Normal
0.6
385
Tumor
0.6
311
Tumor
0.6
535
Tumor
0.6
221
Tumor
0.5
517
Tumor
0.5
983
Tumor
0.5
527
Tumor
0.5
1013
Tumor
0.5
865
Tumor
0.5
975
Tumor
0.5
647
Tumor
0.5
497
Tumor
0.5
925
Tumor
0.4
445
Tumor
0.4
447
Tumor
0.4
921
Tumor
0.4
353
Tumor
0.4
493
Tumor
0.4
943
Tumor
0.4
487
Tumor
0.4
213
Tumor
0.4
271
Tumor
0.4
435
Tumor
0.4
277
Tumor
0.4
427
Tumor
0.4
432
Normal
0.4
534
Normal
0.4
217
Tumor
0.4
967
Tumor
0.3
977
Tumor
0.3
741
Tumor
0.3
461
Tumor
0.3
873
Tumor
0.3
465
Tumor
0.3
393
Tumor
0.3
1045
Tumor
0.2
923
Tumor
0.2
813
Tumor
0.2
663
Tumor
0.2
436
Normal
0.2
434
Normal
0.2
394
Normal
0.2
953
Tumor
0.2
195
Tumor
0.2
573
Tumor
0.2
431
Tumor
0.2
785
Tumor
0.2
386
Normal
0.2
665
Tumor
0.2
375
Tumor
0.2
627
Tumor
0.2
388
Normal
0.2
777
Tumor
0.2
554
Normal
0.2
957
Tumor
0.2
421
Tumor
0.2
147
Tumor
0.1
568
Normal
0.1
915
Tumor
0.1
192
Normal
0.1
125
Tumor
0.1
392
Normal
0.1
563
Tumor
0.1
814
Normal
0.1
883
Tumor
0.1
396
Normal
0.1
425
Tumor
0.1
481
Tumor
0.1
1031
Tumor
0.1
546
Normal
0.1
564
Normal
0.1
641
Tumor
0.0
536
Normal
0.0
745
Tumor
0.0
963
Tumor
0.0
877
Tumor
0.0
558
Normal
0.0
187
Tumor
0.0
112
Tumor
0.0
185
Tumor
0.0
161
Tumor
0.0
258
Normal
0.0
232
Normal
0.0
358
Normal
0.0
383
Tumor
0.0
737
Tumor
0.0
272
Normal
0.0
1041
Tumor
0.0
528
Normal
0.0
722
Normal
0.0
553
Tumor
0.0
365
Tumor
0.0
574
Normal
0.0
538
Normal
0.0
515
Tumor
-0.1
958
Normal
-0.1
455
Tumor
-0.1
981
Tumor
-0.1
352
Normal
-0.1
341
Tumor
-0.1
137
Tumor
-0.1
135
Tumor
-0.1
477
Tumor
-0.1
513
Tumor
-0.1
191
Tumor
-0.1
913
Tumor
-0.1
615
Tumor
-0.1
268
Normal
-0.1
467
Tumor
-0.1
1042
Normal
-0.1
696
Normal
-0.1
976
Normal
-0.1
964
Normal
-0.1
262
Normal
-0.2
422
Normal
-0.2
572
Normal
-0.2
474
Normal
-0.2
867
Tumor
-0.2
672
Normal
-0.2
498
Normal
-0.2
482
Normal
-0.2
557
Tumor
-0.2
354
Normal
-0.2
714
Normal
-0.2
642
Normal
-0.2
127
Tumor
-0.2
494
Normal
-0.2
937
Tumor
-0.2
698
Normal
-0.2
368
Normal
-0.2
145
Tumor
-0.2
113
Tumor
-0.2
342
Normal
-0.2
472
Normal
-0.2
1046
Normal
-0.2
954
Normal
-0.2
755
Tumor
-0.2
956
Normal
-0.2
662
Normal
-0.2
756
Normal
-0.2
1044
Normal
-0.2
966
Normal
-0.3
484
Normal
-0.3
648
Normal
-0.3
196
Normal
-0.3
428
Normal
-0.3
462
Normal
-0.3
666
Normal
-0.3
526
Normal
-0.3
918
Normal
-0.3
448
Normal
-0.3
955
Tumor
-0.3
257
Tumor
-0.3
944
Normal
-0.3
488
Normal
-0.3
686
Normal
-0.3
746
Normal
-0.3
617
Tumor
-0.3
716
Normal
-0.3
218
Normal
-0.3
344
Normal
-0.3
413
Tumor
-0.3
222
Normal
-0.3
545
Tumor
-0.3
343
Tumor
-0.3
1015
Tumor
-0.3
214
Normal
-0.3
926
Normal
-0.3
131
Tumor
-0.4
424
Normal
-0.4
978
Normal
-0.4
664
Normal
-0.4
524
Normal
-0.4
715
Tumor
-0.4
861
Tumor
-0.4
968
Normal
-0.4
618
Normal
-0.4
261
Tumor
-0.4
132
Normal
-0.4
916
Normal
-0.4
1026
Normal
-0.4
721
Tumor
-0.4
146
Normal
-0.4
1032
Normal
-0.4
471
Tumor
-0.4
138
Normal
-0.4
523
Tumor
-0.4
938
Normal
-0.4
142
Normal
-0.4
713
Tumor
-0.4
466
Normal
-0.5
411
Tumor
-0.5
426
Normal
-0.5
514
Normal
-0.5
863
Tumor
-0.5
384
Normal
-0.5
188
Normal
-0.5
492
Normal
-0.5
186
Normal
-0.5
815
Tumor
-0.5
468
Normal
-0.5
366
Normal
-0.5
628
Normal
-0.5
786
Normal
-0.5
518
Normal
-0.5
1028
Normal
-0.5
868
Normal
-0.5
478
Normal
-0.5
362
Normal
-0.5
414
Normal
-0.5
464
Normal
-0.5
136
Normal
-0.5
516
Normal
-0.5
884
Normal
-0.5
491
Tumor
-0.6
451
Tumor
-0.6
452
Normal
-0.6
778
Normal
-0.6
1043
Tumor
-0.6
456
Normal
-0.6
423
Tumor
-0.6
914
Normal
-0.6
817
Tumor
-0.6
141
Tumor
-0.6
858
Normal
-0.6
982
Normal
-0.6
376
Normal
-0.6
148
Normal
-0.6
924
Normal
-0.6
818
Normal
-0.6
922
Normal
-0.6
912
Normal
-0.6
851
Tumor
-0.6
355
Tumor
-0.6
332
Normal
-0.7
727
Tumor
-0.7
1022
Normal
-0.7
857
Tumor
-0.7
278
Normal
-0.7
742
Normal
-0.7
162
Normal
-0.7
312
Normal
-0.7
126
Normal
-0.7
864
Normal
-0.7
636
Normal
-0.8
866
Normal
-0.8
327
Tumor
-0.8
723
Tumor
-0.8
874
Normal
-0.8
298
Normal
-0.8
313
Tumor
-0.8
824
Normal
-0.8
172
Normal
-0.8
314
Normal
-0.8
882
Normal
-0.8
356
Normal
-0.8
124
Normal
-0.8
823
Tumor
-0.8
952
Normal
-0.8
852
Normal
-0.9
1027
Tumor
-0.9
363
Tumor
-0.9
1025
Tumor
-0.9
728
Normal
-0.9
878
Normal
-0.9
911
Tumor
-0.9
984
Normal
-0.9
114
Normal
-0.9
111
Normal
-0.9
1016
Normal
-0.9
128
Normal
-0.9
616
Normal
-1.0
227
Tumor
-1.0
328
Normal
-1.0
862
Normal
-1.0
286
Normal
-1.0
816
Normal
-1.0
685
Tumor
-1.0
416
Normal
-1.0
415
Tumor
-1.0
1014
Normal
-1.1
738
Normal
-1.1
228
Normal
-1.1
224
Normal
-1.1
284
Normal
-1.1
364
Normal
-1.2
744
Normal
-1.2
283
Tumor
-1.4
412
Normal
-1.4
223
Tumor
-1.4
212
Normal
-1.6
211
Tumor
-1.6
285
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
