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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PROZ is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
88.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
78.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
74.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
72.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
62.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
61.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
60.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
59.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
53.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
51.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
51.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
48.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
46.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
46.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
46.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
45.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
44.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
43.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
39.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
39.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
36.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
36.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
36.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
36.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
36.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
36.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
35.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
35.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
35.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
35.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
34.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
34.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
33.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
33.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
33.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
33.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
32.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
32.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
32.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
31.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
31.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
31.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
30.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
30.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
30.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
30.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
30.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
29.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
28.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
28.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
28.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
27.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
27.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
27.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
25.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
25.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
25.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
25.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
24.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
23.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
23.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
23.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
23.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
23.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
23.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
22.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
22.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
22.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
22.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
21.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
21.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
21.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
20.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
19.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
17.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
14.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
12.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
4.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PROZ is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.7
Number of samples
231
Samples
Sample
Description
TPM
DO45215
0 years, male, NA, stage:2, alive, 1170 days
174.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
127.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
114.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
113.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
109.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
108.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
97.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
97.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
85.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
84.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
79.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
71.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
69.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
69.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
65.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
64.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
63.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
61.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
55.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
55.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
54.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
54.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
52.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
52.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
48.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
45.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
44.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
43.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
43.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
43.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
42.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
40.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
40.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
39.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
37.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
35.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
35.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
35.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
34.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
34.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
33.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
33.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
33.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
32.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
32.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
31.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
31.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
30.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
30.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
30.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
29.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
28.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
26.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
23.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
22.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
21.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
2.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
2.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
2.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
1.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
1.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
1.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
877
Tumor
2.6
328
Normal
1.4
741
Tumor
1.4
815
Tumor
1.4
615
Tumor
1.2
616
Normal
1.2
697
Tumor
1.1
713
Tumor
1.1
723
Tumor
1.0
816
Normal
0.9
618
Normal
0.9
884
Normal
0.9
227
Tumor
0.8
192
Normal
0.8
728
Normal
0.8
343
Tumor
0.8
922
Normal
0.8
722
Normal
0.7
351
Tumor
0.7
277
Tumor
0.7
491
Tumor
0.7
142
Normal
0.7
426
Normal
0.7
546
Normal
0.7
742
Normal
0.6
484
Normal
0.6
428
Normal
0.6
361
Tumor
0.6
882
Normal
0.6
878
Normal
0.6
384
Normal
0.6
362
Normal
0.6
514
Normal
0.6
981
Tumor
0.6
636
Normal
0.6
462
Normal
0.6
196
Normal
0.6
924
Normal
0.6
982
Normal
0.6
513
Tumor
0.6
368
Normal
0.5
313
Tumor
0.5
365
Tumor
0.5
314
Normal
0.5
367
Tumor
0.5
423
Tumor
0.5
466
Normal
0.5
958
Normal
0.5
1046
Normal
0.5
743
Tumor
0.5
224
Normal
0.5
967
Tumor
0.5
257
Tumor
0.5
964
Normal
0.5
488
Normal
0.4
141
Tumor
0.4
534
Normal
0.4
111
Normal
0.4
1042
Normal
0.4
498
Normal
0.4
1045
Tumor
0.4
698
Normal
0.4
146
Normal
0.4
195
Tumor
0.4
851
Tumor
0.4
424
Normal
0.4
976
Normal
0.4
312
Normal
0.4
818
Normal
0.3
444
Normal
0.3
286
Normal
0.3
926
Normal
0.3
545
Tumor
0.3
785
Tumor
0.3
464
Normal
0.3
1014
Normal
0.3
468
Normal
0.3
364
Normal
0.3
232
Normal
0.3
474
Normal
0.3
258
Normal
0.3
228
Normal
0.3
914
Normal
0.3
461
Tumor
0.3
126
Normal
0.3
414
Normal
0.3
738
Normal
0.3
978
Normal
0.3
852
Normal
0.3
124
Normal
0.3
917
Tumor
0.3
526
Normal
0.3
482
Normal
0.3
737
Tumor
0.3
352
Normal
0.3
617
Tumor
0.3
391
Tumor
0.3
918
Normal
0.3
268
Normal
0.3
363
Tumor
0.3
1027
Tumor
0.3
366
Normal
0.3
696
Normal
0.3
278
Normal
0.3
516
Normal
0.2
342
Normal
0.2
456
Normal
0.2
422
Normal
0.2
358
Normal
0.2
432
Normal
0.2
858
Normal
0.2
916
Normal
0.2
125
Tumor
0.2
642
Normal
0.2
465
Tumor
0.2
436
Normal
0.2
517
Tumor
0.2
1022
Normal
0.2
857
Tumor
0.2
824
Normal
0.2
425
Tumor
0.2
786
Normal
0.2
421
Tumor
0.2
112
Tumor
0.2
1016
Normal
0.2
744
Normal
0.2
492
Normal
0.2
823
Tumor
0.2
968
Normal
0.2
716
Normal
0.2
212
Normal
0.1
695
Tumor
0.1
554
Normal
0.1
778
Normal
0.1
218
Normal
0.1
332
Normal
0.1
412
Normal
0.1
217
Tumor
0.1
145
Tumor
0.1
396
Normal
0.1
455
Tumor
0.1
727
Tumor
0.1
518
Normal
0.1
494
Normal
0.1
267
Tumor
0.1
261
Tumor
0.1
983
Tumor
0.1
524
Normal
0.0
132
Normal
0.0
223
Tumor
0.0
1028
Normal
0.0
813
Tumor
0.0
452
Normal
0.0
635
Tumor
0.0
472
Normal
0.0
114
Normal
0.0
284
Normal
0.0
714
Normal
0.0
915
Tumor
0.0
262
Normal
0.0
344
Normal
0.0
128
Normal
0.0
965
Tumor
0.0
388
Normal
0.0
481
Tumor
0.0
984
Normal
0.0
553
Tumor
0.0
435
Tumor
0.0
434
Normal
0.0
1041
Tumor
0.0
376
Normal
0.0
483
Tumor
0.0
356
Normal
0.0
448
Normal
0.0
298
Normal
-0.1
354
Normal
-0.1
883
Tumor
-0.1
138
Normal
-0.1
921
Tumor
-0.1
394
Normal
-0.1
487
Tumor
-0.1
467
Tumor
-0.1
331
Tumor
-0.1
497
Tumor
-0.1
283
Tumor
-0.1
191
Tumor
-0.1
721
Tumor
-0.1
272
Normal
-0.1
977
Tumor
-0.1
395
Tumor
-0.1
222
Normal
-0.1
135
Tumor
-0.1
755
Tumor
-0.1
214
Normal
-0.1
966
Normal
-0.1
912
Normal
-0.1
525
Tumor
-0.2
523
Tumor
-0.2
285
Tumor
-0.2
357
Tumor
-0.2
137
Tumor
-0.2
411
Tumor
-0.2
433
Tumor
-0.2
136
Normal
-0.2
756
Normal
-0.2
817
Tumor
-0.2
446
Normal
-0.2
724
Normal
-0.2
383
Tumor
-0.2
745
Tumor
-0.2
341
Tumor
-0.2
311
Tumor
-0.2
447
Tumor
-0.2
686
Normal
-0.2
113
Tumor
-0.2
392
Normal
-0.2
416
Normal
-0.2
528
Normal
-0.2
515
Tumor
-0.3
327
Tumor
-0.3
814
Normal
-0.3
746
Normal
-0.3
777
Tumor
-0.3
231
Tumor
-0.3
627
Tumor
-0.3
387
Tumor
-0.3
975
Tumor
-0.3
923
Tumor
-0.3
451
Tumor
-0.3
957
Tumor
-0.3
715
Tumor
-0.3
1026
Normal
-0.3
375
Tumor
-0.3
413
Tumor
-0.3
628
Normal
-0.3
431
Tumor
-0.4
127
Tumor
-0.4
297
Tumor
-0.4
533
Tumor
-0.4
427
Tumor
-0.4
386
Normal
-0.4
963
Tumor
-0.4
1015
Tumor
-0.4
913
Tumor
-0.4
478
Normal
-0.4
415
Tumor
-0.4
641
Tumor
-0.4
1044
Normal
-0.5
123
Tumor
-0.5
1032
Normal
-0.5
881
Tumor
-0.5
393
Tumor
-0.5
131
Tumor
-0.5
1013
Tumor
-0.5
538
Normal
-0.5
353
Tumor
-0.6
355
Tumor
-0.6
463
Tumor
-0.6
443
Tumor
-0.6
1021
Tumor
-0.6
536
Normal
-0.6
493
Tumor
-0.6
271
Tumor
-0.6
535
Tumor
-0.6
471
Tumor
-0.7
527
Tumor
-0.7
211
Tumor
-0.7
477
Tumor
-0.7
385
Tumor
-0.7
473
Tumor
-0.7
925
Tumor
-0.7
213
Tumor
-0.7
537
Tumor
-0.8
685
Tumor
-0.9
445
Tumor
-0.9
221
Tumor
-1.0
911
Tumor
-1.1
1043
Tumor
-1.1
1025
Tumor
-1.3
1031
Tumor
-1.5
937
Tumor
N/A
938
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
951
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
861
Tumor
N/A
862
Normal
N/A
863
Tumor
N/A
864
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
665
Tumor
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
573
Tumor
N/A
574
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
