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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCID2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
73.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
64.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
41.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
39.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
37.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
36.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
35.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
35.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
32.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
32.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
32.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
30.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
27.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
25.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
24.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
24.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
23.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
22.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
21.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCID2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.4
Number of samples
231
Samples
Sample
Description
TPM
DO45263
0 years, male, NA, stage:3, dead, 270 days
144.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
125.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
50.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
39.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
39.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
39.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
36.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
34.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
32.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
31.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
29.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
28.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
28.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
26.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
26.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
26.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
26.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
25.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
25.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
25.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
24.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
23.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
23.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
23.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
23.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
22.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
20.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
20.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
135
Tumor
1.9
743
Tumor
1.2
965
Tumor
1.1
877
Tumor
1.0
951
Tumor
1.0
411
Tumor
0.8
277
Tumor
0.8
661
Tumor
0.7
123
Tumor
0.7
967
Tumor
0.7
131
Tumor
0.7
351
Tumor
0.6
571
Tumor
0.6
1031
Tumor
0.6
957
Tumor
0.6
535
Tumor
0.6
671
Tumor
0.6
331
Tumor
0.6
1021
Tumor
0.6
983
Tumor
0.5
413
Tumor
0.5
923
Tumor
0.5
425
Tumor
0.5
385
Tumor
0.5
697
Tumor
0.5
815
Tumor
0.5
817
Tumor
0.5
473
Tumor
0.5
433
Tumor
0.5
497
Tumor
0.5
271
Tumor
0.5
112
Tumor
0.4
545
Tumor
0.4
517
Tumor
0.4
525
Tumor
0.4
865
Tumor
0.4
695
Tumor
0.4
567
Tumor
0.4
211
Tumor
0.4
737
Tumor
0.4
663
Tumor
0.4
975
Tumor
0.3
963
Tumor
0.3
447
Tumor
0.3
537
Tumor
0.3
553
Tumor
0.3
367
Tumor
0.3
685
Tumor
0.3
221
Tumor
0.3
883
Tumor
0.3
1013
Tumor
0.3
313
Tumor
0.3
471
Tumor
0.3
1025
Tumor
0.3
727
Tumor
0.3
491
Tumor
0.3
977
Tumor
0.3
261
Tumor
0.3
355
Tumor
0.3
1043
Tumor
0.2
523
Tumor
0.2
715
Tumor
0.2
311
Tumor
0.2
285
Tumor
0.2
881
Tumor
0.2
713
Tumor
0.2
483
Tumor
0.2
443
Tumor
0.2
185
Tumor
0.2
915
Tumor
0.2
557
Tumor
0.2
231
Tumor
0.2
921
Tumor
0.2
445
Tumor
0.2
463
Tumor
0.2
493
Tumor
0.2
641
Tumor
0.2
1041
Tumor
0.2
363
Tumor
0.2
481
Tumor
0.2
171
Tumor
0.1
455
Tumor
0.1
147
Tumor
0.1
981
Tumor
0.1
297
Tumor
0.1
536
Normal
0.1
1027
Tumor
0.1
741
Tumor
0.1
375
Tumor
0.1
635
Tumor
0.1
515
Tumor
0.1
911
Tumor
0.1
467
Tumor
0.1
227
Tumor
0.1
785
Tumor
0.1
267
Tumor
0.1
435
Tumor
0.1
423
Tumor
0.1
431
Tumor
0.1
451
Tumor
0.1
867
Tumor
0.1
943
Tumor
0.1
357
Tumor
0.1
533
Tumor
0.1
387
Tumor
0.1
461
Tumor
0.0
573
Tumor
0.0
813
Tumor
0.0
395
Tumor
0.0
527
Tumor
0.0
492
Normal
0.0
427
Tumor
0.0
391
Tumor
0.0
538
Normal
0.0
554
Normal
0.0
421
Tumor
0.0
873
Tumor
0.0
393
Tumor
0.0
823
Tumor
0.0
851
Tumor
0.0
283
Tumor
0.0
343
Tumor
0.0
125
Tumor
0.0
917
Tumor
0.0
327
Tumor
0.0
861
Tumor
0.0
777
Tumor
0.0
863
Tumor
0.0
937
Tumor
0.0
913
Tumor
0.0
953
Tumor
0.0
141
Tumor
0.0
213
Tumor
0.0
217
Tumor
0.0
192
Normal
0.0
746
Normal
-0.1
665
Tumor
-0.1
478
Normal
-0.1
563
Tumor
-0.1
516
Normal
-0.1
952
Normal
-0.1
341
Tumor
-0.1
477
Tumor
-0.1
113
Tumor
-0.1
257
Tumor
-0.1
724
Normal
-0.1
161
Tumor
-0.1
1015
Tumor
-0.1
365
Tumor
-0.1
744
Normal
-0.1
857
Tumor
-0.1
146
Normal
-0.1
524
Normal
-0.1
814
Normal
-0.1
364
Normal
-0.1
958
Normal
-0.1
647
Tumor
-0.1
415
Tumor
-0.1
137
Tumor
-0.1
955
Tumor
-0.1
966
Normal
-0.1
755
Tumor
-0.1
361
Tumor
-0.1
127
Tumor
-0.1
1028
Normal
-0.1
187
Tumor
-0.1
434
Normal
-0.1
572
Normal
-0.1
191
Tumor
-0.1
526
Normal
-0.2
968
Normal
-0.2
472
Normal
-0.2
465
Tumor
-0.2
558
Normal
-0.2
456
Normal
-0.2
142
Normal
-0.2
136
Normal
-0.2
138
Normal
-0.2
356
Normal
-0.2
498
Normal
-0.2
546
Normal
-0.2
672
Normal
-0.2
534
Normal
-0.2
518
Normal
-0.2
452
Normal
-0.2
414
Normal
-0.2
878
Normal
-0.2
858
Normal
-0.2
488
Normal
-0.2
816
Normal
-0.2
412
Normal
-0.2
468
Normal
-0.2
1026
Normal
-0.2
314
Normal
-0.2
383
Tumor
-0.2
128
Normal
-0.2
484
Normal
-0.2
924
Normal
-0.2
328
Normal
-0.2
132
Normal
-0.2
332
Normal
-0.2
662
Normal
-0.2
386
Normal
-0.2
422
Normal
-0.2
956
Normal
-0.2
474
Normal
-0.2
428
Normal
-0.2
824
Normal
-0.2
664
Normal
-0.2
482
Normal
-0.2
964
Normal
-0.2
444
Normal
-0.2
424
Normal
-0.2
696
Normal
-0.2
513
Tumor
-0.2
925
Tumor
-0.2
223
Tumor
-0.2
912
Normal
-0.2
278
Normal
-0.2
938
Normal
-0.2
446
Normal
-0.2
344
Normal
-0.2
342
Normal
-0.2
376
Normal
-0.2
818
Normal
-0.2
448
Normal
-0.2
494
Normal
-0.2
874
Normal
-0.2
852
Normal
-0.2
392
Normal
-0.2
916
Normal
-0.2
272
Normal
-0.2
1014
Normal
-0.2
954
Normal
-0.2
648
Normal
-0.2
186
Normal
-0.2
466
Normal
-0.2
436
Normal
-0.3
358
Normal
-0.3
976
Normal
-0.3
738
Normal
-0.3
124
Normal
-0.3
728
Normal
-0.3
686
Normal
-0.3
464
Normal
-0.3
984
Normal
-0.3
866
Normal
-0.3
195
Tumor
-0.3
218
Normal
-0.3
1045
Tumor
-0.3
918
Normal
-0.3
188
Normal
-0.3
462
Normal
-0.3
232
Normal
-0.3
145
Tumor
-0.3
778
Normal
-0.3
214
Normal
-0.3
354
Normal
-0.3
284
Normal
-0.3
268
Normal
-0.3
568
Normal
-0.3
698
Normal
-0.3
944
Normal
-0.3
745
Tumor
-0.3
642
Normal
-0.3
1042
Normal
-0.3
742
Normal
-0.3
487
Tumor
-0.3
126
Normal
-0.3
922
Normal
-0.3
1032
Normal
-0.3
722
Normal
-0.3
362
Normal
-0.3
416
Normal
-0.3
862
Normal
-0.3
564
Normal
-0.3
982
Normal
-0.3
224
Normal
-0.3
148
Normal
-0.3
388
Normal
-0.3
172
Normal
-0.3
384
Normal
-0.3
716
Normal
-0.3
432
Normal
-0.3
353
Tumor
-0.3
721
Tumor
-0.3
298
Normal
-0.3
714
Normal
-0.3
574
Normal
-0.3
352
Normal
-0.3
723
Tumor
-0.3
514
Normal
-0.3
666
Normal
-0.3
394
Normal
-0.3
756
Normal
-0.3
228
Normal
-0.3
1022
Normal
-0.3
882
Normal
-0.3
162
Normal
-0.3
1016
Normal
-0.3
628
Normal
-0.4
864
Normal
-0.4
786
Normal
-0.4
528
Normal
-0.4
426
Normal
-0.4
914
Normal
-0.4
618
Normal
-0.4
396
Normal
-0.4
222
Normal
-0.4
366
Normal
-0.4
312
Normal
-0.4
615
Tumor
-0.4
1046
Normal
-0.4
262
Normal
-0.4
627
Tumor
-0.4
1044
Normal
-0.4
978
Normal
-0.4
258
Normal
-0.4
212
Normal
-0.4
111
Normal
-0.4
114
Normal
-0.4
196
Normal
-0.4
368
Normal
-0.4
617
Tumor
-0.4
884
Normal
-0.4
636
Normal
-0.5
926
Normal
-0.5
286
Normal
-0.5
868
Normal
-0.5
616
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
