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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KLC1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
79.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
51.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
50.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
49.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
47.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
45.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
38.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
38.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
36.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
36.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
36.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
35.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
34.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
34.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
33.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
33.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
33.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
31.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
30.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
29.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
29.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
29.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
29.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
28.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
27.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
25.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
25.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
24.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
24.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
24.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
23.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
23.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
22.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
22.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
20.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
19.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
18.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
16.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KLC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.7
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
36.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
33.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
32.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
30.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
28.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
28.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
26.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
25.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
23.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
311
Tumor
1.2
661
Tumor
1.2
881
Tumor
1.0
817
Tumor
0.9
943
Tumor
0.9
283
Tumor
0.9
211
Tumor
0.9
815
Tumor
0.8
813
Tumor
0.8
917
Tumor
0.8
975
Tumor
0.8
724
Normal
0.8
497
Tumor
0.7
385
Tumor
0.7
331
Tumor
0.7
921
Tumor
0.7
471
Tumor
0.7
671
Tumor
0.7
455
Tumor
0.7
285
Tumor
0.7
297
Tumor
0.7
131
Tumor
0.7
463
Tumor
0.6
814
Normal
0.6
685
Tumor
0.6
743
Tumor
0.6
351
Tumor
0.5
421
Tumor
0.5
536
Normal
0.5
277
Tumor
0.5
737
Tumor
0.5
383
Tumor
0.5
545
Tumor
0.5
491
Tumor
0.5
223
Tumor
0.5
877
Tumor
0.5
527
Tumor
0.5
533
Tumor
0.5
525
Tumor
0.4
697
Tumor
0.4
535
Tumor
0.4
135
Tumor
0.4
395
Tumor
0.4
343
Tumor
0.4
983
Tumor
0.4
447
Tumor
0.4
492
Normal
0.4
553
Tumor
0.4
125
Tumor
0.4
498
Normal
0.4
563
Tumor
0.4
363
Tumor
0.4
1015
Tumor
0.4
573
Tumor
0.3
427
Tumor
0.3
271
Tumor
0.3
963
Tumor
0.3
185
Tumor
0.3
355
Tumor
0.3
641
Tumor
0.3
375
Tumor
0.3
663
Tumor
0.3
425
Tumor
0.3
823
Tumor
0.3
1021
Tumor
0.3
444
Normal
0.3
478
Normal
0.3
965
Tumor
0.3
951
Tumor
0.2
967
Tumor
0.2
861
Tumor
0.2
213
Tumor
0.2
727
Tumor
0.2
713
Tumor
0.2
916
Normal
0.2
473
Tumor
0.2
721
Tumor
0.2
483
Tumor
0.2
715
Tumor
0.2
567
Tumor
0.2
192
Normal
0.2
851
Tumor
0.2
461
Tumor
0.2
883
Tumor
0.2
524
Normal
0.2
387
Tumor
0.2
434
Normal
0.2
1031
Tumor
0.2
367
Tumor
0.2
257
Tumor
0.2
224
Normal
0.2
187
Tumor
0.2
538
Normal
0.1
857
Tumor
0.1
467
Tumor
0.1
1025
Tumor
0.1
865
Tumor
0.1
515
Tumor
0.1
415
Tumor
0.1
493
Tumor
0.1
411
Tumor
0.1
141
Tumor
0.1
433
Tumor
0.1
413
Tumor
0.1
145
Tumor
0.1
966
Normal
0.1
617
Tumor
0.1
953
Tumor
0.1
537
Tumor
0.1
147
Tumor
0.1
863
Tumor
0.1
672
Normal
0.1
923
Tumor
0.1
384
Normal
0.1
212
Normal
0.1
852
Normal
0.0
188
Normal
0.0
523
Tumor
0.0
227
Tumor
0.0
357
Tumor
0.0
327
Tumor
0.0
925
Tumor
0.0
978
Normal
0.0
913
Tumor
0.0
137
Tumor
0.0
126
Normal
0.0
665
Tumor
0.0
221
Tumor
0.0
1027
Tumor
0.0
284
Normal
0.0
443
Tumor
0.0
1013
Tumor
0.0
918
Normal
0.0
262
Normal
0.0
1045
Tumor
0.0
416
Normal
0.0
435
Tumor
0.0
195
Tumor
0.0
261
Tumor
0.0
191
Tumor
0.0
361
Tumor
0.0
1028
Normal
-0.1
268
Normal
-0.1
785
Tumor
-0.1
353
Tumor
-0.1
956
Normal
-0.1
558
Normal
-0.1
312
Normal
-0.1
958
Normal
-0.1
954
Normal
-0.1
874
Normal
-0.1
451
Tumor
-0.1
365
Tumor
-0.1
557
Tumor
-0.1
1043
Tumor
-0.1
516
Normal
-0.1
231
Tumor
-0.1
474
Normal
-0.1
977
Tumor
-0.1
217
Tumor
-0.1
386
Normal
-0.1
755
Tumor
-0.1
952
Normal
-0.1
138
Normal
-0.1
955
Tumor
-0.1
777
Tumor
-0.1
984
Normal
-0.1
741
Tumor
-0.1
976
Normal
-0.1
778
Normal
-0.1
915
Tumor
-0.1
574
Normal
-0.1
957
Tumor
-0.1
696
Normal
-0.1
924
Normal
-0.1
982
Normal
-0.1
628
Normal
-0.1
364
Normal
-0.1
662
Normal
-0.1
124
Normal
-0.1
431
Tumor
-0.1
686
Normal
-0.1
716
Normal
-0.1
937
Tumor
-0.1
867
Tumor
-0.1
1044
Normal
-0.1
445
Tumor
-0.2
362
Normal
-0.2
627
Tumor
-0.2
146
Normal
-0.2
448
Normal
-0.2
142
Normal
-0.2
884
Normal
-0.2
494
Normal
-0.2
728
Normal
-0.2
352
Normal
-0.2
816
Normal
-0.2
968
Normal
-0.2
313
Tumor
-0.2
528
Normal
-0.2
412
Normal
-0.2
341
Tumor
-0.2
487
Tumor
-0.2
328
Normal
-0.2
1042
Normal
-0.2
468
Normal
-0.2
228
Normal
-0.2
572
Normal
-0.2
517
Tumor
-0.2
922
Normal
-0.2
344
Normal
-0.2
161
Tumor
-0.2
868
Normal
-0.2
914
Normal
-0.2
391
Tumor
-0.2
366
Normal
-0.2
218
Normal
-0.2
354
Normal
-0.2
514
Normal
-0.2
396
Normal
-0.2
786
Normal
-0.2
926
Normal
-0.2
745
Tumor
-0.2
546
Normal
-0.2
422
Normal
-0.2
392
Normal
-0.2
286
Normal
-0.2
666
Normal
-0.2
526
Normal
-0.2
472
Normal
-0.2
214
Normal
-0.2
738
Normal
-0.3
488
Normal
-0.3
232
Normal
-0.3
554
Normal
-0.3
1016
Normal
-0.3
664
Normal
-0.3
1041
Tumor
-0.3
873
Tumor
-0.3
534
Normal
-0.3
878
Normal
-0.3
356
Normal
-0.3
368
Normal
-0.3
642
Normal
-0.3
882
Normal
-0.3
136
Normal
-0.3
424
Normal
-0.3
911
Tumor
-0.3
864
Normal
-0.3
722
Normal
-0.3
456
Normal
-0.3
466
Normal
-0.3
518
Normal
-0.3
615
Tumor
-0.3
744
Normal
-0.3
938
Normal
-0.3
477
Tumor
-0.3
818
Normal
-0.3
513
Tumor
-0.3
394
Normal
-0.3
332
Normal
-0.3
393
Tumor
-0.3
1032
Normal
-0.3
695
Tumor
-0.3
944
Normal
-0.3
866
Normal
-0.3
698
Normal
-0.3
564
Normal
-0.3
1026
Normal
-0.3
462
Normal
-0.3
272
Normal
-0.3
428
Normal
-0.3
127
Tumor
-0.3
414
Normal
-0.3
1046
Normal
-0.3
464
Normal
-0.3
423
Tumor
-0.4
742
Normal
-0.4
114
Normal
-0.4
647
Tumor
-0.4
723
Tumor
-0.4
858
Normal
-0.4
981
Tumor
-0.4
388
Normal
-0.4
484
Normal
-0.4
298
Normal
-0.4
714
Normal
-0.4
426
Normal
-0.4
648
Normal
-0.4
756
Normal
-0.4
278
Normal
-0.4
196
Normal
-0.4
113
Tumor
-0.4
616
Normal
-0.4
148
Normal
-0.4
452
Normal
-0.4
824
Normal
-0.4
912
Normal
-0.4
432
Normal
-0.4
172
Normal
-0.4
964
Normal
-0.4
258
Normal
-0.4
111
Normal
-0.4
618
Normal
-0.4
636
Normal
-0.4
862
Normal
-0.4
1022
Normal
-0.4
1014
Normal
-0.4
481
Tumor
-0.4
482
Normal
-0.4
314
Normal
-0.4
162
Normal
-0.5
376
Normal
-0.5
446
Normal
-0.5
635
Tumor
-0.5
128
Normal
-0.5
132
Normal
-0.5
222
Normal
-0.5
186
Normal
-0.5
568
Normal
-0.5
358
Normal
-0.5
342
Normal
-0.5
571
Tumor
-0.6
171
Tumor
-0.6
436
Normal
-0.6
746
Normal
-0.6
267
Tumor
-0.7
123
Tumor
-0.7
112
Tumor
-0.7
465
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
