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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMB2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
56.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
49.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
47.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
43.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
43.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
40.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
40.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
38.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
38.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
37.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
37.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
37.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
36.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
36.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
36.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
35.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
35.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
35.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
34.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
34.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
33.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
33.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
33.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
32.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
32.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
32.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
32.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
31.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
31.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
30.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
29.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
28.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
28.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
28.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
27.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
27.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
27.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
27.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
27.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
26.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
25.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
25.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
25.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
25.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
24.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
24.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
24.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
24.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
24.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
23.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
23.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
23.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
23.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
22.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
22.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
21.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
21.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
21.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
21.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
20.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
20.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
19.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
19.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
18.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
18.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
18.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
18.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
16.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
15.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMB2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.2
Number of samples
231
Samples
Sample
Description
TPM
DO48741
0 years, male, NA, stage:3, alive, 240 days
79.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
62.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
58.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
52.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
51.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
48.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
48.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
46.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
45.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
45.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
45.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
45.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
45.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
44.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
44.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
43.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
42.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
41.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
41.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
40.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
40.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
40.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
40.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
40.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
39.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
38.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
38.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
38.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
38.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
37.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
36.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
36.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
35.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
34.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
34.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
34.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
34.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
34.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
34.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
34.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
33.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
33.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
33.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
32.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
32.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
32.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
32.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
32.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
32.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
32.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
32.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
31.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
31.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
31.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
31.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
31.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
31.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
30.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
30.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
30.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
30.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
30.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
29.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
29.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
29.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
29.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
28.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
28.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
28.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
28.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
28.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
28.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
27.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
27.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
27.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
27.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
27.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
27.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
27.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
27.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
27.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
26.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
26.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
26.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
26.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
25.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
25.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
25.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
25.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
25.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
24.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
24.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
24.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
24.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
23.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
23.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
23.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
22.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
22.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
21.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
21.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
18.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
16.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
432
Normal
0.7
436
Normal
0.7
278
Normal
0.6
222
Normal
0.6
342
Normal
0.6
314
Normal
0.6
196
Normal
0.6
446
Normal
0.6
298
Normal
0.6
366
Normal
0.6
456
Normal
0.6
218
Normal
0.5
358
Normal
0.5
186
Normal
0.5
332
Normal
0.5
388
Normal
0.5
148
Normal
0.5
258
Normal
0.5
111
Normal
0.5
132
Normal
0.5
114
Normal
0.5
136
Normal
0.5
172
Normal
0.5
272
Normal
0.5
138
Normal
0.5
362
Normal
0.5
162
Normal
0.5
394
Normal
0.5
662
Normal
0.5
376
Normal
0.5
664
Normal
0.5
666
Normal
0.5
452
Normal
0.5
262
Normal
0.5
128
Normal
0.4
354
Normal
0.4
312
Normal
0.4
434
Normal
0.4
386
Normal
0.4
214
Normal
0.4
313
Tumor
0.4
188
Normal
0.4
353
Tumor
0.4
648
Normal
0.4
396
Normal
0.4
113
Tumor
0.4
127
Tumor
0.4
124
Normal
0.4
232
Normal
0.4
146
Normal
0.4
414
Normal
0.4
818
Normal
0.4
384
Normal
0.4
824
Normal
0.4
423
Tumor
0.4
392
Normal
0.4
268
Normal
0.4
1026
Normal
0.4
663
Tumor
0.4
344
Normal
0.4
426
Normal
0.4
368
Normal
0.4
126
Normal
0.4
217
Tumor
0.4
464
Normal
0.3
422
Normal
0.3
513
Tumor
0.3
564
Normal
0.3
738
Normal
0.3
286
Normal
0.3
627
Tumor
0.3
365
Tumor
0.3
742
Normal
0.3
112
Tumor
0.3
352
Normal
0.3
468
Normal
0.3
466
Normal
0.3
816
Normal
0.3
642
Normal
0.3
728
Normal
0.3
462
Normal
0.3
618
Normal
0.3
327
Tumor
0.3
482
Normal
0.3
161
Tumor
0.3
714
Normal
0.3
914
Normal
0.3
777
Tumor
0.3
277
Tumor
0.3
195
Tumor
0.3
635
Tumor
0.3
723
Tumor
0.3
416
Normal
0.3
698
Normal
0.3
722
Normal
0.3
192
Normal
0.3
147
Tumor
0.3
615
Tumor
0.3
424
Normal
0.3
228
Normal
0.3
964
Normal
0.2
141
Tumor
0.2
428
Normal
0.2
444
Normal
0.2
515
Tumor
0.2
661
Tumor
0.2
858
Normal
0.2
411
Tumor
0.2
864
Normal
0.2
672
Normal
0.2
123
Tumor
0.2
568
Normal
0.2
361
Tumor
0.2
574
Normal
0.2
284
Normal
0.2
518
Normal
0.2
528
Normal
0.2
356
Normal
0.2
1022
Normal
0.2
341
Tumor
0.2
185
Tumor
0.2
213
Tumor
0.2
145
Tumor
0.2
461
Tumor
0.2
191
Tumor
0.2
628
Normal
0.2
616
Normal
0.2
862
Normal
0.2
746
Normal
0.2
445
Tumor
0.1
387
Tumor
0.1
514
Normal
0.1
786
Normal
0.1
142
Normal
0.1
448
Normal
0.1
966
Normal
0.1
868
Normal
0.1
224
Normal
0.1
433
Tumor
0.1
866
Normal
0.1
1016
Normal
0.1
573
Tumor
0.1
882
Normal
0.1
383
Tumor
0.1
257
Tumor
0.1
1044
Normal
0.1
724
Normal
0.1
534
Normal
0.1
952
Normal
0.1
665
Tumor
0.1
451
Tumor
0.1
546
Normal
0.1
135
Tumor
0.1
696
Normal
0.1
125
Tumor
0.1
413
Tumor
0.1
393
Tumor
0.1
918
Normal
0.1
878
Normal
0.1
982
Normal
0.1
212
Normal
0.1
976
Normal
0.1
778
Normal
0.1
271
Tumor
0.1
955
Tumor
0.1
968
Normal
0.1
744
Normal
0.1
375
Tumor
0.1
435
Tumor
0.1
636
Normal
0.1
912
Normal
0.1
554
Normal
0.1
1042
Normal
0.1
1046
Normal
0.1
516
Normal
0.1
526
Normal
0.1
494
Normal
0.1
924
Normal
0.1
617
Tumor
0.1
187
Tumor
0.1
926
Normal
0.1
716
Normal
0.1
467
Tumor
0.1
695
Tumor
0.1
484
Normal
0.0
852
Normal
0.0
357
Tumor
0.0
431
Tumor
0.0
756
Normal
0.0
745
Tumor
0.0
874
Normal
0.0
557
Tumor
0.0
857
Tumor
0.0
911
Tumor
0.0
472
Normal
0.0
412
Normal
0.0
223
Tumor
0.0
488
Normal
0.0
957
Tumor
0.0
443
Tumor
0.0
922
Normal
0.0
1015
Tumor
0.0
267
Tumor
0.0
1028
Normal
0.0
137
Tumor
0.0
171
Tumor
0.0
477
Tumor
0.0
474
Normal
0.0
1013
Tumor
0.0
814
Normal
0.0
364
Normal
0.0
958
Normal
0.0
741
Tumor
0.0
981
Tumor
0.0
261
Tumor
0.0
343
Tumor
0.0
884
Normal
0.0
367
Tumor
0.0
956
Normal
0.0
391
Tumor
0.0
686
Normal
0.0
647
Tumor
0.0
944
Normal
0.0
867
Tumor
0.0
873
Tumor
-0.1
567
Tumor
-0.1
978
Normal
-0.1
1027
Tumor
-0.1
131
Tumor
-0.1
863
Tumor
-0.1
558
Normal
-0.1
328
Normal
-0.1
1032
Normal
-0.1
1045
Tumor
-0.1
351
Tumor
-0.1
481
Tumor
-0.1
311
Tumor
-0.1
427
Tumor
-0.1
297
Tumor
-0.1
1014
Normal
-0.1
533
Tumor
-0.1
231
Tumor
-0.1
563
Tumor
-0.1
465
Tumor
-0.1
938
Normal
-0.1
737
Tumor
-0.1
815
Tumor
-0.1
572
Normal
-0.1
227
Tumor
-0.1
925
Tumor
-0.1
861
Tumor
-0.1
385
Tumor
-0.1
916
Normal
-0.1
221
Tumor
-0.1
553
Tumor
-0.1
478
Normal
-0.1
727
Tumor
-0.2
984
Normal
-0.2
331
Tumor
-0.2
755
Tumor
-0.2
395
Tumor
-0.2
421
Tumor
-0.2
523
Tumor
-0.2
524
Normal
-0.2
571
Tumor
-0.2
671
Tumor
-0.2
455
Tumor
-0.2
913
Tumor
-0.2
851
Tumor
-0.2
355
Tumor
-0.2
525
Tumor
-0.2
493
Tumor
-0.2
415
Tumor
-0.2
498
Normal
-0.2
813
Tumor
-0.2
865
Tumor
-0.2
953
Tumor
-0.3
1021
Tumor
-0.3
641
Tumor
-0.3
823
Tumor
-0.3
917
Tumor
-0.3
473
Tumor
-0.3
487
Tumor
-0.3
721
Tumor
-0.3
517
Tumor
-0.3
923
Tumor
-0.3
492
Normal
-0.3
536
Normal
-0.3
954
Normal
-0.3
915
Tumor
-0.3
1043
Tumor
-0.3
975
Tumor
-0.3
977
Tumor
-0.3
363
Tumor
-0.3
713
Tumor
-0.3
715
Tumor
-0.3
471
Tumor
-0.4
967
Tumor
-0.4
425
Tumor
-0.4
921
Tumor
-0.4
447
Tumor
-0.4
463
Tumor
-0.4
817
Tumor
-0.4
497
Tumor
-0.4
483
Tumor
-0.4
963
Tumor
-0.4
1025
Tumor
-0.4
538
Normal
-0.4
685
Tumor
-0.4
743
Tumor
-0.4
883
Tumor
-0.4
211
Tumor
-0.4
951
Tumor
-0.4
881
Tumor
-0.4
785
Tumor
-0.5
537
Tumor
-0.5
285
Tumor
-0.5
983
Tumor
-0.5
1031
Tumor
-0.5
1041
Tumor
-0.5
283
Tumor
-0.5
527
Tumor
-0.5
943
Tumor
-0.6
491
Tumor
-0.6
965
Tumor
-0.6
545
Tumor
-0.7
535
Tumor
-0.7
697
Tumor
-0.7
937
Tumor
-0.8
877
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
