MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:150.4 nTPM
HPA Brain:75.4 nTPM
GTEx:150.4 nTPM
FANTOM5:44.9 Scaled Tags Per Million
Pig:34.0 nTPM
Mouse:38.3 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 75.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.5
2019 Male, age 18, unknown 70.0
2411 Female, age 72, unknown 67.4
1870 Female, age 42, unknown 62.7
2828 Female, age 72, unknown 61.4
1827 Male, age 72, unknown 59.3
1830 Male, age 51, unknown 53.9
1833 Male, age 53, unknown 53.9
2586 Male, age 75, left hemisphere 52.5
2666 Male, age 74, left hemisphere 48.7
2219 Male, age 76, both hemispheres 45.0
Dorsal raphe nucleus
nTPM: 75.4
2298 Female, age 72, unknown 101.6
2750 Male, age 76, both hemispheres 70.6
2047 Male, age 72, unknown 70.0
2016 Female, age 72, unknown 69.4
1828 Male, age 53, unknown 65.3
Inferior colliculus
nTPM: 54.2
2097 Female, age 72, unknown 65.2
1890 Male, age 53, unknown 57.0
1848 Female, age 42, unknown 49.3
2849 Male, age 72, unknown 45.4
Median raphe nucleus
nTPM: 66.8
2220 Male, age 76, midline 66.8
Periaquaductal grey, anterior
nTPM: 65.2
1795 Male, age 51, unknown 70.0
2502 Female, age 75, unknown 68.6
1947 Male, age 18, unknown 57.0
Periaquaductal grey, dorsal
nTPM: 55.8
2850 Male, age 76, both hemispheres 65.3
1840 Male, age 53, unknown 62.8
1831 Male, age 72, unknown 52.1
2464 Female, age 72, unknown 42.8
Periaquaductal grey, lateral
nTPM: 60.6
2272 Male, age 74, both hemispheres 70.0
2053 Male, age 18, unknown 56.0
2140 Male, age 76, both hemispheres 55.7
Pretectal area
nTPM: 60.2
1817 Female, age 42, unknown 72.0
2273 Male, age 74, both hemispheres 70.5
2007 Male, age 72, unknown 68.9
2316 Male, age 76, right hemisphere 64.0
1816 Male, age 51, unknown 63.7
2224 Female, age 72, unknown 62.9
1944 Female, age 72, unknown 58.6
2667 Female, age 75, unknown 56.6
1815 Male, age 53, unknown 54.1
2825 Male, age 18, unknown 49.3
2407 Male, age 75, both hemispheres 42.2
Red nucleus
nTPM: 67.4
1821 Female, age 72, unknown 85.7
2227 Male, age 72, unknown 77.8
2503 Female, age 72, unknown 73.8
2769 Male, age 72, unknown 72.4
1954 Female, age 42, unknown 72.0
2725 Female, age 75, unknown 71.1
2785 Male, age 18, unknown 67.6
2823 Male, age 76, right hemisphere 62.6
1904 Male, age 53, unknown 61.9
1865 Male, age 51, unknown 60.8
2588 Male, age 74, left hemisphere 55.8
2584 Male, age 75, left hemisphere 47.1
Substantia nigra
nTPM: 58.7
1916 Female, age 42, unknown 72.9
1851 Male, age 51, unknown 68.3
2665 Male, age 74, both hemispheres 64.9
1889 Female, age 72, unknown 61.0
2409 Female, age 72, unknown 60.3
2699 Male, age 18, unknown 57.8
1941 Male, age 53, unknown 54.8
2590 Female, age 75, unknown 52.5
2583 Male, age 75, right hemisphere 48.1
2241 Male, age 72, unknown 46.2
Superior colliculus
nTPM: 56.5
1796 Male, age 53, unknown 71.2
2261 Male, age 18, unknown 66.9
1995 Male, age 72, unknown 61.1
1913 Female, age 42, unknown 59.1
2668 Female, age 75, unknown 57.8
2587 Male, age 74, left hemisphere 55.2
2087 Female, age 72, unknown 50.7
1839 Male, age 51, unknown 48.9
1895 Male, age 76, right hemisphere 47.9
2664 Male, age 75, both hemispheres 46.2
Ventral tegmental area
nTPM: 66.3
1915 Female, age 42, unknown 74.0
2410 Female, age 72, unknown 65.6
2021 Male, age 53, unknown 65.1
1942 Male, age 51, unknown 64.8
2223 Female, age 72, unknown 64.6
2218 Male, age 76, both hemispheres 63.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 150.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 150.4
Samples: 139

Max nTPM: 349.6
Min nTPM: 61.8
Std nTPM: 45.9
Median nTPM: 145.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 349.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 349.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 320.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 268.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 239.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 238.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 230.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 218.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 217.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 213.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 209.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 44.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.9
FF:10158-103A5 76 years, female 44.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 34.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.7
Samples: 4

Max nTPM: 42.6
Min nTPM: 19.7
Sample A Female 42.6
Sample B Female 27.6
Sample C Male 25.0
Sample D Male 19.7
Midbrain
nTPM: 28.9
Samples: 4

Max nTPM: 36.6
Min nTPM: 24.4
Sample A Female 36.6
Sample B Female 28.8
Sample C Male 24.4
Sample D Male 25.6
Periaqueductal gray
nTPM: 25.2
Samples: 3

Max nTPM: 28.7
Min nTPM: 23.0
Sample B Female 23.8
Sample C Male 28.7
Sample D Male 23.0
Superior colliculi
nTPM: 34.0
Samples: 4

Max nTPM: 44.9
Min nTPM: 25.4
Sample A Female 44.9
Sample B Female 39.0
Sample C Male 26.7
Sample D Male 25.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 38.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.3
Samples: 4

Max nTPM: 47.0
Min nTPM: 35.2
Sample A Male 47.0
Sample B Male 35.5
Sample C Female 35.2
Sample D Female 35.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
70303761 Antisense, RP_050609_02_D07, Mouse strain C57BL/6J (56 days, male) 1.3

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