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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ERGIC3 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
203.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
681.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
680.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
573.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
568.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
566.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
512.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
495.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
420.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
420.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
407.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
403.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
398.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
383.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
381.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
381.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
358.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
355.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
350.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
350.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
349.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
349.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
341.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
340.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
339.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
337.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
334.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
332.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
330.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
330.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
326.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
325.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
323.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
314.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
311.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
310.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
308.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
307.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
304.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
303.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
299.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
296.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
296.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
291.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
290.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
287.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
287.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
287.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
286.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
285.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
284.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
283.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
282.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
279.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
278.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
278.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
277.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
275.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
275.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
273.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
271.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
271.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
270.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
268.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
266.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
266.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
265.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
264.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
262.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
261.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
255.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
255.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
255.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
255.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
254.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
254.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
253.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
252.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
251.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
250.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
249.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
248.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
248.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
248.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
247.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
247.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
247.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
247.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
244.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
243.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
243.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
242.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
241.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
240.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
238.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
238.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
237.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
237.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
234.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
234.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
234.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
233.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
233.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
232.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
231.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
230.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
230.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
230.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
229.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
229.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
228.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
228.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
226.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
226.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
225.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
224.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
223.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
223.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
222.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
220.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
218.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
216.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
215.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
214.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
213.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
212.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
212.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
212.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
211.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
210.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
210.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
209.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
209.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
209.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
208.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
206.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
206.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
205.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
205.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
204.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
204.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
203.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
201.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
200.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
199.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
198.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
198.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
198.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
197.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
197.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
197.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
196.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
195.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
195.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
194.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
194.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
193.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
192.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
191.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
191.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
191.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
190.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
189.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
189.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
189.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
188.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
187.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
187.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
186.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
186.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
185.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
183.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
183.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
182.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
182.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
182.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
181.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
181.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
181.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
180.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
180.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
179.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
178.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
178.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
178.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
177.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
177.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
177.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
177.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
176.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
176.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
176.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
176.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
176.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
175.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
175.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
175.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
175.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
174.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
174.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
174.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
173.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
172.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
171.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
171.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
171.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
171.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
170.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
170.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
169.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
169.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
169.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
168.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
168.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
168.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
168.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
167.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
167.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
167.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
166.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
166.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
166.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
166.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
166.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
165.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
165.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
165.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
164.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
164.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
164.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
164.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
164.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
163.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
163.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
163.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
163.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
161.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
159.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
159.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
159.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
159.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
158.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
158.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
157.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
157.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
155.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
155.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
155.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
155.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
155.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
154.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
153.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
153.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
152.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
152.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
152.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
152.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
151.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
151.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
151.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
150.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
150.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
150.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
149.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
149.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
149.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
148.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
148.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
148.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
147.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
147.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
147.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
146.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
146.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
146.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
146.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
145.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
145.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
144.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
144.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
144.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
143.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
143.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
142.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
142.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
140.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
140.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
140.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
138.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
138.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
137.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
137.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
137.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
136.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
135.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
134.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
133.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
133.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
132.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
132.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
131.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
131.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
131.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
130.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
130.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
130.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
129.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
129.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
129.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
129.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
129.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
128.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
128.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
126.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
126.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
125.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
125.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
125.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
124.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
124.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
123.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
123.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
123.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
123.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
121.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
121.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
121.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
118.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
118.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
117.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
117.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
117.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
116.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
115.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
115.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
114.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
114.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
114.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
112.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
111.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
109.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
109.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
107.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
105.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
105.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
105.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
105.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
104.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
103.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
103.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
102.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
101.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
101.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
99.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
98.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
98.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
97.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
96.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
95.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
93.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
92.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
88.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ERGIC3 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
133.2
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
442.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
341.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
331.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
306.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
292.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
285.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
269.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
261.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
260.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
254.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
247.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
245.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
240.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
236.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
236.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
236.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
235.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
214.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
213.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
210.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
203.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
202.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
202.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
200.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
197.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
197.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
194.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
192.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
188.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
187.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
185.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
184.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
184.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
184.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
183.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
182.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
180.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
180.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
180.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
180.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
179.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
179.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
179.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
179.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
177.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
173.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
173.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
172.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
172.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
170.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
165.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
165.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
162.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
162.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
159.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
158.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
157.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
157.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
157.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
156.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
155.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
153.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
153.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
148.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
146.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
146.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
146.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
145.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
144.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
144.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
143.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
143.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
142.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
142.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
142.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
139.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
139.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
138.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
137.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
136.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
136.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
136.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
136.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
135.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
135.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
132.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
132.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
131.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
130.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
130.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
130.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
129.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
128.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
128.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
128.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
128.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
127.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
126.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
124.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
124.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
122.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
122.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
122.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
122.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
121.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
121.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
121.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
120.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
120.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
120.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
119.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
119.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
119.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
119.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
118.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
118.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
118.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
118.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
118.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
118.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
117.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
117.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
116.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
116.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
116.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
116.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
115.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
115.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
114.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
114.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
114.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
113.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
113.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
112.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
112.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
112.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
112.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
110.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
109.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
109.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
109.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
109.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
108.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
108.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
108.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
107.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
107.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
107.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
107.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
106.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
106.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
105.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
103.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
103.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
102.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
102.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
101.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
101.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
101.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
100.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
99.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
98.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
98.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
98.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
97.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
97.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
97.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
97.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
97.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
96.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
96.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
96.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
95.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
95.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
95.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
94.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
94.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
94.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
93.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
93.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
93.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
93.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
92.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
92.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
92.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
91.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
91.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
91.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
91.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
89.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
88.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
88.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
88.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
88.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
88.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
87.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
86.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
85.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
85.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
85.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
84.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
84.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
84.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
82.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
82.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
82.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
81.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
81.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
79.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
79.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
79.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
78.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
77.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
76.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
74.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
74.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
72.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
71.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
71.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
68.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
67.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
67.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
66.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
64.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
63.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
62.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
62.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
58.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
55.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
54.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
54.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
487
Tumor
1.4
925
Tumor
1.2
937
Tumor
1.0
745
Tumor
1.0
967
Tumor
0.8
965
Tumor
0.8
367
Tumor
0.7
357
Tumor
0.7
535
Tumor
0.6
351
Tumor
0.6
227
Tumor
0.6
527
Tumor
0.6
477
Tumor
0.6
983
Tumor
0.6
445
Tumor
0.5
813
Tumor
0.5
963
Tumor
0.5
951
Tumor
0.4
1013
Tumor
0.4
471
Tumor
0.4
387
Tumor
0.4
385
Tumor
0.4
851
Tumor
0.4
1025
Tumor
0.4
661
Tumor
0.4
391
Tumor
0.3
981
Tumor
0.3
743
Tumor
0.3
171
Tumor
0.3
123
Tumor
0.3
313
Tumor
0.3
545
Tumor
0.3
873
Tumor
0.3
537
Tumor
0.3
727
Tumor
0.3
363
Tumor
0.3
465
Tumor
0.3
755
Tumor
0.3
341
Tumor
0.3
567
Tumor
0.3
815
Tumor
0.3
443
Tumor
0.2
127
Tumor
0.2
1015
Tumor
0.2
342
Normal
0.2
724
Normal
0.2
523
Tumor
0.2
715
Tumor
0.2
1021
Tumor
0.2
211
Tumor
0.2
257
Tumor
0.2
1045
Tumor
0.2
473
Tumor
0.2
223
Tumor
0.2
431
Tumor
0.2
665
Tumor
0.2
147
Tumor
0.2
128
Normal
0.2
746
Normal
0.2
113
Tumor
0.2
185
Tumor
0.2
331
Tumor
0.1
137
Tumor
0.1
187
Tumor
0.1
911
Tumor
0.1
135
Tumor
0.1
615
Tumor
0.1
411
Tumor
0.1
817
Tumor
0.1
217
Tumor
0.1
396
Normal
0.1
435
Tumor
0.1
573
Tumor
0.1
383
Tumor
0.1
393
Tumor
0.1
554
Normal
0.1
877
Tumor
0.1
433
Tumor
0.1
141
Tumor
0.1
125
Tumor
0.1
685
Tumor
0.1
957
Tumor
0.1
814
Normal
0.1
392
Normal
0.1
647
Tumor
0.1
1043
Tumor
0.1
353
Tumor
0.0
917
Tumor
0.0
267
Tumor
0.0
286
Normal
0.0
228
Normal
0.0
663
Tumor
0.0
283
Tumor
0.0
138
Normal
0.0
421
Tumor
0.0
261
Tumor
0.0
161
Tumor
0.0
132
Normal
0.0
455
Tumor
0.0
966
Normal
0.0
451
Tumor
0.0
388
Normal
0.0
697
Tumor
0.0
285
Tumor
0.0
344
Normal
0.0
518
Normal
0.0
553
Tumor
0.0
386
Normal
0.0
923
Tumor
0.0
738
Normal
0.0
778
Normal
0.0
568
Normal
0.0
426
Normal
0.0
515
Tumor
0.0
136
Normal
0.0
952
Normal
0.0
231
Tumor
-0.1
648
Normal
-0.1
361
Tumor
-0.1
284
Normal
-0.1
538
Normal
-0.1
698
Normal
-0.1
112
Tumor
-0.1
311
Tumor
-0.1
497
Tumor
-0.1
414
Normal
-0.1
913
Tumor
-0.1
142
Normal
-0.1
358
Normal
-0.1
355
Tumor
-0.1
728
Normal
-0.1
212
Normal
-0.1
258
Normal
-0.1
214
Normal
-0.1
272
Normal
-0.1
124
Normal
-0.1
617
Tumor
-0.1
423
Tumor
-0.1
546
Normal
-0.1
452
Normal
-0.1
232
Normal
-0.1
461
Tumor
-0.1
218
Normal
-0.1
224
Normal
-0.1
744
Normal
-0.1
714
Normal
-0.1
474
Normal
-0.1
671
Tumor
-0.1
422
Normal
-0.1
365
Tumor
-0.1
412
Normal
-0.1
696
Normal
-0.1
861
Tumor
-0.1
278
Normal
-0.1
213
Tumor
-0.2
424
Normal
-0.2
327
Tumor
-0.2
526
Normal
-0.2
533
Tumor
-0.2
516
Normal
-0.2
574
Normal
-0.2
145
Tumor
-0.2
186
Normal
-0.2
298
Normal
-0.2
968
Normal
-0.2
1028
Normal
-0.2
741
Tumor
-0.2
447
Tumor
-0.2
277
Tumor
-0.2
416
Normal
-0.2
262
Normal
-0.2
956
Normal
-0.2
148
Normal
-0.2
571
Tumor
-0.2
1027
Tumor
-0.2
428
Normal
-0.2
356
Normal
-0.2
723
Tumor
-0.2
114
Normal
-0.2
878
Normal
-0.2
314
Normal
-0.2
328
Normal
-0.2
742
Normal
-0.2
924
Normal
-0.2
975
Tumor
-0.2
722
Normal
-0.2
446
Normal
-0.2
914
Normal
-0.2
525
Tumor
-0.2
1026
Normal
-0.2
413
Tumor
-0.2
494
Normal
-0.2
448
Normal
-0.2
484
Normal
-0.2
436
Normal
-0.2
716
Normal
-0.2
188
Normal
-0.2
695
Tumor
-0.2
172
Normal
-0.2
686
Normal
-0.2
343
Tumor
-0.2
488
Normal
-0.2
642
Normal
-0.2
297
Tumor
-0.2
874
Normal
-0.2
492
Normal
-0.2
268
Normal
-0.2
922
Normal
-0.2
564
Normal
-0.3
462
Normal
-0.3
111
Normal
-0.3
146
Normal
-0.3
976
Normal
-0.3
312
Normal
-0.3
394
Normal
-0.3
434
Normal
-0.3
534
Normal
-0.3
756
Normal
-0.3
955
Tumor
-0.3
881
Tumor
-0.3
864
Normal
-0.3
466
Normal
-0.3
528
Normal
-0.3
432
Normal
-0.3
1044
Normal
-0.3
664
Normal
-0.3
463
Tumor
-0.3
918
Normal
-0.3
868
Normal
-0.3
131
Tumor
-0.3
415
Tumor
-0.3
472
Normal
-0.3
786
Normal
-0.3
368
Normal
-0.3
524
Normal
-0.3
618
Normal
-0.3
921
Tumor
-0.3
713
Tumor
-0.3
883
Tumor
-0.3
737
Tumor
-0.3
662
Normal
-0.3
362
Normal
-0.3
916
Normal
-0.3
636
Normal
-0.3
464
Normal
-0.3
126
Normal
-0.3
558
Normal
-0.3
513
Tumor
-0.3
195
Tumor
-0.3
332
Normal
-0.3
514
Normal
-0.3
958
Normal
-0.3
395
Tumor
-0.3
943
Tumor
-0.3
366
Normal
-0.3
162
Normal
-0.3
352
Normal
-0.3
364
Normal
-0.4
468
Normal
-0.4
376
Normal
-0.4
672
Normal
-0.4
1041
Tumor
-0.4
456
Normal
-0.4
572
Normal
-0.4
221
Tumor
-0.4
425
Tumor
-0.4
1022
Normal
-0.4
964
Normal
-0.4
982
Normal
-0.4
862
Normal
-0.4
271
Tumor
-0.4
641
Tumor
-0.4
517
Tumor
-0.4
823
Tumor
-0.4
536
Normal
-0.4
915
Tumor
-0.4
493
Tumor
-0.4
491
Tumor
-0.4
1014
Normal
-0.4
866
Normal
-0.4
375
Tumor
-0.4
944
Normal
-0.4
857
Tumor
-0.4
354
Normal
-0.4
482
Normal
-0.4
444
Normal
-0.5
884
Normal
-0.5
926
Normal
-0.5
666
Normal
-0.5
777
Tumor
-0.5
196
Normal
-0.5
816
Normal
-0.5
721
Tumor
-0.5
1016
Normal
-0.5
953
Tumor
-0.5
1031
Tumor
-0.5
627
Tumor
-0.5
1042
Normal
-0.5
481
Tumor
-0.5
1046
Normal
-0.5
616
Normal
-0.5
192
Normal
-0.5
222
Normal
-0.6
882
Normal
-0.6
563
Tumor
-0.6
938
Normal
-0.6
498
Normal
-0.6
191
Tumor
-0.6
785
Tumor
-0.6
852
Normal
-0.6
628
Normal
-0.6
858
Normal
-0.6
954
Normal
-0.6
557
Tumor
-0.6
984
Normal
-0.6
478
Normal
-0.6
977
Tumor
-0.6
467
Tumor
-0.6
635
Tumor
-0.7
384
Normal
-0.7
1032
Normal
-0.7
912
Normal
-0.7
978
Normal
-0.7
483
Tumor
-0.7
865
Tumor
-0.8
867
Tumor
-0.8
427
Tumor
-0.8
863
Tumor
-1.0
824
Normal
-1.0
818
Normal
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.