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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RALY is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
74.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
274.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
230.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
223.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
217.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
214.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
203.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
203.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
194.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
190.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
188.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
188.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
187.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
183.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
181.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
171.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
170.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
170.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
167.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
166.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
165.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
161.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
159.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
156.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
155.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
154.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
152.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
151.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
150.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
149.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
148.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
145.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
145.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
145.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
145.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
144.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
144.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
139.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
138.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
138.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
137.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
131.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
130.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
128.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
126.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
125.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
124.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
122.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
121.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
120.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
118.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
118.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
117.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
113.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
113.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
113.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
111.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
111.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
109.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
107.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
105.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
104.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
104.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
102.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
102.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
102.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
102.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
101.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
101.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
101.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
100.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
100.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
99.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
98.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
98.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
98.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
98.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
97.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
97.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
97.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
97.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
96.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
96.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
95.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
94.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
94.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
94.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
93.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
93.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
93.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
92.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
92.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
91.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
90.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
90.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
90.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
90.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
90.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
89.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
89.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
88.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
88.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
88.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
87.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
87.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
86.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
86.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
86.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
86.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
86.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
86.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
86.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
85.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
85.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
84.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
83.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
83.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
83.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
82.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
82.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
82.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
82.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
81.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
81.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
81.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
81.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
80.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
79.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
79.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
79.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
78.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
78.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
78.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
77.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
77.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
77.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
76.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
76.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
76.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
75.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
75.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
74.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
74.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
74.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
74.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
74.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
73.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
73.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
73.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
73.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
72.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
72.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
71.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
70.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
70.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
69.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
69.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
69.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
69.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
68.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
68.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
68.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
68.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
68.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
68.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
68.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
67.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
67.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
66.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
65.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
65.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
65.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
65.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
65.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
64.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
64.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
63.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
63.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
63.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
63.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
63.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
63.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
63.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
62.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
62.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
62.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
62.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
62.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
62.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
62.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
62.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
62.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
61.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
61.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
61.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
61.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
61.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
60.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
60.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
60.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
60.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
60.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
59.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
59.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
58.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
58.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
58.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
58.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
57.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
57.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
57.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
57.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
57.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
57.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
56.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
56.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
56.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
56.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
56.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
56.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
55.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
55.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
55.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
55.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
55.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
55.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
55.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
55.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
54.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
54.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
54.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
54.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
54.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
54.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
54.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
54.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
52.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
52.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
52.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
51.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
51.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
51.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
51.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
50.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
50.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
50.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
50.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
50.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
50.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
49.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
49.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
49.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
49.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
49.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
49.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
48.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
48.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
48.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
47.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
47.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
47.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
47.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
46.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
46.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
46.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
45.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
45.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
44.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
44.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
44.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
44.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
44.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
44.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
44.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
43.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
43.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
42.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
42.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
42.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
42.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
42.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
42.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
42.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
42.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
41.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
41.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
41.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
40.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
40.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
40.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
40.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
39.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
39.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
39.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
39.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
39.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
39.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
39.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
38.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
38.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
38.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
38.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
38.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
38.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
38.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
37.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
37.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
36.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
36.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
36.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
36.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
36.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
35.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
35.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
35.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
34.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
34.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
33.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
33.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
32.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
32.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
32.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
32.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
32.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
31.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
31.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
31.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
31.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
31.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
31.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
30.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
29.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
28.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
28.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
27.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
27.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
26.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
26.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
25.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
25.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
24.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
24.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
23.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
23.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
22.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
18.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
17.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
16.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
16.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
16.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RALY is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
66.5
Number of samples
231
Samples
Sample
Description
TPM
DO23511
0 years, female, NA, stage:3, dead, 180 days
349.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
278.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
190.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
176.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
176.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
166.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
148.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
147.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
147.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
142.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
140.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
139.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
135.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
134.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
134.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
128.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
126.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
125.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
125.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
122.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
122.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
122.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
121.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
118.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
117.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
115.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
114.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
114.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
109.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
108.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
107.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
106.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
105.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
104.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
103.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
103.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
101.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
99.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
99.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
99.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
98.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
98.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
97.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
95.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
91.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
91.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
89.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
85.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
85.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
84.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
84.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
82.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
82.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
80.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
79.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
78.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
78.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
77.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
77.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
76.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
76.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
76.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
75.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
75.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
75.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
75.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
74.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
74.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
73.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
72.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
72.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
70.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
70.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
70.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
70.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
68.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
67.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
66.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
66.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
66.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
66.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
66.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
66.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
66.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
66.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
65.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
63.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
62.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
62.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
62.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
62.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
61.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
61.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
60.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
60.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
60.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
59.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
58.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
58.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
58.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
58.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
58.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
57.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
57.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
57.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
56.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
56.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
56.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
56.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
55.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
55.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
55.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
55.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
55.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
55.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
54.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
54.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
54.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
54.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
54.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
53.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
53.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
53.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
52.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
52.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
52.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
52.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
52.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
52.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
51.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
51.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
51.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
50.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
50.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
50.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
50.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
50.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
50.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
50.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
50.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
49.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
49.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
49.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
48.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
48.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
48.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
48.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
48.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
48.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
48.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
48.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
47.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
46.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
46.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
46.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
46.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
46.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
45.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
45.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
45.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
45.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
45.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
43.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
43.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
42.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
42.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
42.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
42.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
42.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
42.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
41.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
41.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
40.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
40.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
39.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
39.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
39.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
39.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
38.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
38.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
37.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
37.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
37.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
37.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
36.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
36.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
36.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
36.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
36.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
36.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
35.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
35.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
35.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
35.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
35.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
35.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
35.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
34.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
34.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
34.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
33.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
33.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
33.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
33.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
32.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
31.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
31.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
31.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
30.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
30.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
29.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
28.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
28.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
28.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
28.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
28.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
28.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
28.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
27.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
27.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
27.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
26.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
25.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
23.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
23.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
22.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
22.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
351
Tumor
1.6
385
Tumor
1.0
877
Tumor
1.0
815
Tumor
0.9
671
Tumor
0.9
331
Tumor
0.9
743
Tumor
0.9
425
Tumor
0.8
661
Tumor
0.8
497
Tumor
0.8
211
Tumor
0.7
724
Normal
0.7
965
Tumor
0.7
435
Tumor
0.7
313
Tumor
0.6
463
Tumor
0.6
695
Tumor
0.6
921
Tumor
0.6
355
Tumor
0.6
975
Tumor
0.6
1031
Tumor
0.6
1013
Tumor
0.6
131
Tumor
0.6
817
Tumor
0.6
473
Tumor
0.6
221
Tumor
0.5
271
Tumor
0.5
277
Tumor
0.5
983
Tumor
0.5
727
Tumor
0.5
411
Tumor
0.5
647
Tumor
0.5
641
Tumor
0.5
127
Tumor
0.5
517
Tumor
0.5
545
Tumor
0.5
433
Tumor
0.5
571
Tumor
0.5
923
Tumor
0.5
112
Tumor
0.5
363
Tumor
0.5
737
Tumor
0.4
967
Tumor
0.4
977
Tumor
0.4
357
Tumor
0.4
865
Tumor
0.4
951
Tumor
0.4
567
Tumor
0.4
943
Tumor
0.4
283
Tumor
0.4
1021
Tumor
0.4
937
Tumor
0.4
285
Tumor
0.4
227
Tumor
0.4
663
Tumor
0.4
535
Tumor
0.4
881
Tumor
0.4
161
Tumor
0.4
953
Tumor
0.4
635
Tumor
0.3
125
Tumor
0.3
1041
Tumor
0.3
455
Tumor
0.3
367
Tumor
0.3
171
Tumor
0.3
447
Tumor
0.3
443
Tumor
0.3
297
Tumor
0.3
491
Tumor
0.3
341
Tumor
0.3
471
Tumor
0.3
387
Tumor
0.3
375
Tumor
0.3
861
Tumor
0.3
213
Tumor
0.3
1015
Tumor
0.3
123
Tumor
0.3
217
Tumor
0.3
483
Tumor
0.3
395
Tumor
0.3
537
Tumor
0.3
685
Tumor
0.3
261
Tumor
0.3
135
Tumor
0.2
311
Tumor
0.2
814
Normal
0.2
741
Tumor
0.2
343
Tumor
0.2
1027
Tumor
0.2
917
Tumor
0.2
963
Tumor
0.2
465
Tumor
0.2
267
Tumor
0.2
957
Tumor
0.2
467
Tumor
0.2
785
Tumor
0.2
477
Tumor
0.1
383
Tumor
0.1
557
Tumor
0.1
867
Tumor
0.1
755
Tumor
0.1
911
Tumor
0.1
883
Tumor
0.1
925
Tumor
0.1
185
Tumor
0.1
715
Tumor
0.1
192
Normal
0.1
391
Tumor
0.1
421
Tumor
0.1
451
Tumor
0.1
434
Normal
0.1
147
Tumor
0.1
913
Tumor
0.1
141
Tumor
0.1
444
Normal
0.0
563
Tumor
0.0
493
Tumor
0.0
1045
Tumor
0.0
851
Tumor
0.0
427
Tumor
0.0
413
Tumor
0.0
478
Normal
0.0
813
Tumor
0.0
487
Tumor
0.0
721
Tumor
0.0
713
Tumor
0.0
431
Tumor
0.0
1043
Tumor
0.0
492
Normal
0.0
384
Normal
0.0
445
Tumor
0.0
423
Tumor
0.0
873
Tumor
-0.1
536
Normal
-0.1
533
Tumor
-0.1
777
Tumor
-0.1
524
Normal
-0.1
665
Tumor
-0.1
231
Tumor
-0.1
257
Tumor
-0.1
573
Tumor
-0.1
191
Tumor
-0.1
915
Tumor
-0.1
525
Tumor
-0.1
978
Normal
-0.1
126
Normal
-0.1
223
Tumor
-0.1
268
Normal
-0.1
823
Tumor
-0.1
365
Tumor
-0.1
461
Tumor
-0.1
415
Tumor
-0.1
1025
Tumor
-0.1
352
Normal
-0.1
188
Normal
-0.1
916
Normal
-0.2
284
Normal
-0.2
617
Tumor
-0.2
686
Normal
-0.2
884
Normal
-0.2
716
Normal
-0.2
224
Normal
-0.2
187
Tumor
-0.2
857
Tumor
-0.2
966
Normal
-0.2
958
Normal
-0.2
878
Normal
-0.2
498
Normal
-0.2
195
Tumor
-0.2
312
Normal
-0.2
137
Tumor
-0.2
362
Normal
-0.2
662
Normal
-0.2
984
Normal
-0.2
361
Tumor
-0.2
527
Tumor
-0.2
824
Normal
-0.2
1028
Normal
-0.2
863
Tumor
-0.2
386
Normal
-0.2
1032
Normal
-0.2
546
Normal
-0.2
954
Normal
-0.2
924
Normal
-0.2
981
Tumor
-0.2
212
Normal
-0.2
866
Normal
-0.2
976
Normal
-0.2
114
Normal
-0.2
672
Normal
-0.2
744
Normal
-0.2
146
Normal
-0.2
516
Normal
-0.2
145
Tumor
-0.2
1014
Normal
-0.2
874
Normal
-0.2
538
Normal
-0.2
124
Normal
-0.3
714
Normal
-0.3
628
Normal
-0.3
523
Tumor
-0.3
852
Normal
-0.3
918
Normal
-0.3
558
Normal
-0.3
344
Normal
-0.3
696
Normal
-0.3
882
Normal
-0.3
912
Normal
-0.3
697
Tumor
-0.3
968
Normal
-0.3
1042
Normal
-0.3
412
Normal
-0.3
528
Normal
-0.3
818
Normal
-0.3
778
Normal
-0.3
922
Normal
-0.3
472
Normal
-0.3
1044
Normal
-0.3
364
Normal
-0.3
416
Normal
-0.3
262
Normal
-0.3
816
Normal
-0.3
113
Tumor
-0.3
272
Normal
-0.3
111
Normal
-0.3
572
Normal
-0.3
553
Tumor
-0.3
914
Normal
-0.3
396
Normal
-0.3
424
Normal
-0.3
964
Normal
-0.3
142
Normal
-0.3
664
Normal
-0.3
514
Normal
-0.3
218
Normal
-0.3
786
Normal
-0.3
474
Normal
-0.3
228
Normal
-0.3
138
Normal
-0.3
944
Normal
-0.3
353
Tumor
-0.3
128
Normal
-0.3
868
Normal
-0.3
354
Normal
-0.3
723
Tumor
-0.3
858
Normal
-0.3
738
Normal
-0.3
1022
Normal
-0.3
515
Tumor
-0.3
481
Tumor
-0.3
436
Normal
-0.3
526
Normal
-0.3
756
Normal
-0.3
332
Normal
-0.3
464
Normal
-0.3
728
Normal
-0.3
448
Normal
-0.4
666
Normal
-0.4
214
Normal
-0.4
955
Tumor
-0.4
314
Normal
-0.4
366
Normal
-0.4
468
Normal
-0.4
368
Normal
-0.4
864
Normal
-0.4
1016
Normal
-0.4
627
Tumor
-0.4
952
Normal
-0.4
428
Normal
-0.4
462
Normal
-0.4
482
Normal
-0.4
574
Normal
-0.4
554
Normal
-0.4
162
Normal
-0.4
518
Normal
-0.4
392
Normal
-0.4
742
Normal
-0.4
956
Normal
-0.4
356
Normal
-0.4
278
Normal
-0.4
342
Normal
-0.4
456
Normal
-0.4
466
Normal
-0.4
926
Normal
-0.4
432
Normal
-0.4
488
Normal
-0.4
446
Normal
-0.4
862
Normal
-0.4
196
Normal
-0.4
534
Normal
-0.4
414
Normal
-0.4
648
Normal
-0.4
615
Tumor
-0.4
746
Normal
-0.4
136
Normal
-0.4
1026
Normal
-0.4
327
Tumor
-0.4
393
Tumor
-0.4
328
Normal
-0.4
286
Normal
-0.4
616
Normal
-0.4
938
Normal
-0.4
484
Normal
-0.4
698
Normal
-0.4
258
Normal
-0.4
1046
Normal
-0.4
568
Normal
-0.4
422
Normal
-0.4
132
Normal
-0.4
298
Normal
-0.4
722
Normal
-0.4
222
Normal
-0.4
376
Normal
-0.4
982
Normal
-0.4
148
Normal
-0.5
513
Tumor
-0.5
232
Normal
-0.5
745
Tumor
-0.5
358
Normal
-0.5
172
Normal
-0.5
494
Normal
-0.5
394
Normal
-0.5
636
Normal
-0.5
564
Normal
-0.5
426
Normal
-0.5
618
Normal
-0.5
642
Normal
-0.6
388
Normal
-0.6
186
Normal
-0.6
452
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
