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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPS26 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
62.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
213.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
183.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
163.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
142.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
133.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
130.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
129.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
127.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
127.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
126.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
124.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
123.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
120.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
119.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
116.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
112.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
110.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
109.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
105.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
102.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
102.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
101.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
101.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
100.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
98.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
98.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
98.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
98.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
97.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
97.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
96.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
96.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
94.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
94.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
93.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
93.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
92.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
91.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
91.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
91.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
90.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
90.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
88.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
88.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
87.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
87.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
86.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
86.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
86.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
86.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
86.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
85.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
85.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
85.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
84.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
83.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
83.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
83.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
83.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
82.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
82.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
81.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
81.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
80.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
80.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
79.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
79.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
79.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
78.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
78.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
78.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
78.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
77.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
77.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
77.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
77.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
77.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
76.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
76.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
76.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
76.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
76.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
76.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
76.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
76.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
75.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
75.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
75.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
75.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
75.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
75.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
75.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
74.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
74.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
74.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
74.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
73.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
72.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
72.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
72.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
71.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
71.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
71.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
71.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
71.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
70.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
70.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
70.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
70.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
69.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
69.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
68.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
68.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
68.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
68.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
68.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
68.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
67.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
67.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
67.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
67.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
66.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
66.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
66.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
66.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
65.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
65.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
65.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
64.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
64.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
63.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
63.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
63.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
63.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
63.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
63.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
63.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
63.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
62.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
62.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
62.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
62.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
62.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
62.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
62.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
61.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
61.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
61.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
61.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
61.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
61.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
61.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
61.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
61.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
60.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
60.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
60.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
60.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
60.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
60.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
59.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
59.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
59.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
59.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
58.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
58.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
58.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
58.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
58.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
58.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
58.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
58.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
57.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
57.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
57.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
57.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
57.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
57.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
57.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
57.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
57.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
57.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
56.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
56.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
56.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
56.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
56.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
56.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
55.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
55.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
55.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
55.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
55.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
55.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
54.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
54.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
54.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
54.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
54.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
54.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
54.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
54.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
53.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
53.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
53.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
53.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
53.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
53.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
53.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
53.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
53.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
53.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
53.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
53.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
53.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
52.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
52.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
52.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
52.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
52.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
52.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
52.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
52.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
52.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
52.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
52.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
52.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
52.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
52.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
52.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
51.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
51.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
51.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
50.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
50.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
50.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
50.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
50.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
50.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
50.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
50.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
50.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
50.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
50.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
50.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
50.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
50.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
49.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
49.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
49.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
49.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
48.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
48.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
48.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
48.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
48.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
48.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
48.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
48.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
48.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
48.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
48.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
48.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
47.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
47.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
47.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
47.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
47.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
46.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
46.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
46.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
46.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
46.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
46.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
45.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
45.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
45.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
45.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
44.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
44.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
44.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
44.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
43.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
43.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
43.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
43.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
43.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
43.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
42.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
42.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
42.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
42.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
42.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
42.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
42.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
42.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
42.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
42.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
42.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
42.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
42.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
41.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
41.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
40.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
40.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
40.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
40.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
39.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
39.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
39.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
39.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
39.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
38.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
38.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
38.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
38.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
38.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
37.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
37.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
37.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
37.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
36.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
36.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
35.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
35.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
35.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
35.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
34.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
34.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
33.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
32.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
32.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
32.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
32.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
32.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
32.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
31.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
31.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
31.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
30.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
30.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
30.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
30.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
29.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
29.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
29.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
28.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
28.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
27.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
26.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
24.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
23.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
23.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
21.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPS26 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.4
Number of samples
231
Samples
Sample
Description
TPM
DO23511
0 years, female, NA, stage:3, dead, 180 days
188.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
145.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
134.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
126.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
125.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
115.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
110.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
107.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
106.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
105.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
103.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
99.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
95.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
94.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
92.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
91.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
85.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
84.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
84.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
84.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
79.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
79.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
79.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
78.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
78.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
77.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
77.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
75.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
75.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
75.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
71.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
70.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
68.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
67.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
64.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
64.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
64.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
64.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
62.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
61.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
60.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
59.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
59.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
58.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
58.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
57.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
57.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
57.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
56.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
56.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
56.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
55.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
55.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
55.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
54.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
54.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
54.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
54.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
53.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
53.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
53.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
52.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
52.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
52.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
51.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
51.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
51.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
51.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
50.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
49.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
49.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
49.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
49.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
48.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
48.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
48.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
47.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
47.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
47.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
46.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
46.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
46.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
45.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
45.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
45.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
45.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
44.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
44.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
44.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
44.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
44.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
44.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
44.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
43.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
43.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
43.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
43.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
42.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
42.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
42.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
42.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
42.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
42.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
42.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
41.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
41.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
41.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
41.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
40.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
40.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
40.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
39.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
39.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
39.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
39.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
39.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
39.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
39.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
39.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
39.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
38.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
38.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
38.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
37.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
37.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
37.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
37.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
37.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
37.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
37.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
37.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
37.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
37.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
37.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
36.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
36.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
36.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
35.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
35.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
35.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
35.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
35.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
35.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
35.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
35.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
35.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
35.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
34.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
34.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
34.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
34.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
34.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
34.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
33.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
33.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
33.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
33.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
33.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
33.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
33.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
33.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
33.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
33.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
33.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
32.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
32.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
32.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
32.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
31.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
31.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
31.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
31.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
31.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
30.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
30.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
30.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
30.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
30.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
30.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
29.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
29.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
29.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
29.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
29.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
29.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
28.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
28.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
28.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
28.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
27.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
26.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
26.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
26.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
26.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
26.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
24.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
24.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
23.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
23.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
22.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
21.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
20.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1041
Tumor
1.3
411
Tumor
1.2
435
Tumor
1.1
231
Tumor
1.0
473
Tumor
1.0
227
Tumor
0.9
571
Tumor
0.9
865
Tumor
0.9
557
Tumor
0.9
967
Tumor
0.9
361
Tumor
0.8
267
Tumor
0.8
537
Tumor
0.7
1013
Tumor
0.7
713
Tumor
0.7
171
Tumor
0.7
957
Tumor
0.7
695
Tumor
0.7
123
Tumor
0.7
221
Tumor
0.6
363
Tumor
0.6
423
Tumor
0.6
1025
Tumor
0.6
483
Tumor
0.6
715
Tumor
0.6
525
Tumor
0.5
327
Tumor
0.5
965
Tumor
0.5
357
Tumor
0.5
477
Tumor
0.5
665
Tumor
0.5
147
Tumor
0.5
915
Tumor
0.5
981
Tumor
0.5
861
Tumor
0.5
351
Tumor
0.5
745
Tumor
0.5
533
Tumor
0.5
951
Tumor
0.5
553
Tumor
0.5
367
Tumor
0.4
953
Tumor
0.4
755
Tumor
0.4
393
Tumor
0.4
663
Tumor
0.4
685
Tumor
0.4
741
Tumor
0.4
567
Tumor
0.4
127
Tumor
0.4
517
Tumor
0.4
937
Tumor
0.4
365
Tumor
0.4
1031
Tumor
0.3
257
Tumor
0.3
883
Tumor
0.3
911
Tumor
0.3
195
Tumor
0.3
823
Tumor
0.3
1021
Tumor
0.3
913
Tumor
0.3
977
Tumor
0.3
465
Tumor
0.3
671
Tumor
0.3
641
Tumor
0.3
355
Tumor
0.3
145
Tumor
0.3
271
Tumor
0.3
513
Tumor
0.3
331
Tumor
0.3
191
Tumor
0.3
427
Tumor
0.3
877
Tumor
0.3
467
Tumor
0.3
721
Tumor
0.3
743
Tumor
0.2
277
Tumor
0.2
963
Tumor
0.2
535
Tumor
0.2
387
Tumor
0.2
463
Tumor
0.2
497
Tumor
0.2
433
Tumor
0.2
413
Tumor
0.2
223
Tumor
0.2
867
Tumor
0.2
187
Tumor
0.2
313
Tumor
0.2
132
Normal
0.2
923
Tumor
0.2
285
Tumor
0.2
353
Tumor
0.2
873
Tumor
0.2
727
Tumor
0.1
722
Normal
0.1
647
Tumor
0.1
431
Tumor
0.1
395
Tumor
0.1
356
Normal
0.1
635
Tumor
0.1
213
Tumor
0.1
964
Normal
0.1
851
Tumor
0.1
724
Normal
0.1
944
Normal
0.1
1032
Normal
0.1
912
Normal
0.1
572
Normal
0.1
493
Tumor
0.1
436
Normal
0.1
128
Normal
0.1
261
Tumor
0.1
491
Tumor
0.1
534
Normal
0.1
697
Tumor
0.1
416
Normal
0.1
926
Normal
0.1
385
Tumor
0.1
573
Tumor
0.1
938
Normal
0.1
756
Normal
0.0
983
Tumor
0.0
131
Tumor
0.0
925
Tumor
0.0
466
Normal
0.0
113
Tumor
0.0
616
Normal
0.0
112
Tumor
0.0
148
Normal
0.0
1014
Normal
0.0
664
Normal
0.0
868
Normal
0.0
777
Tumor
0.0
432
Normal
0.0
696
Normal
0.0
864
Normal
0.0
328
Normal
0.0
564
Normal
0.0
391
Tumor
0.0
615
Tumor
0.0
516
Normal
0.0
528
Normal
0.0
617
Tumor
0.0
481
Tumor
0.0
514
Normal
0.0
958
Normal
0.0
358
Normal
0.0
482
Normal
0.0
451
Tumor
0.0
1022
Normal
0.0
648
Normal
0.0
1042
Normal
0.0
914
Normal
0.0
716
Normal
0.0
272
Normal
0.0
196
Normal
0.0
212
Normal
0.0
464
Normal
0.0
114
Normal
-0.1
428
Normal
-0.1
526
Normal
-0.1
297
Tumor
-0.1
136
Normal
-0.1
214
Normal
-0.1
858
Normal
-0.1
642
Normal
-0.1
881
Tumor
-0.1
666
Normal
-0.1
258
Normal
-0.1
728
Normal
-0.1
375
Tumor
-0.1
188
Normal
-0.1
523
Tumor
-0.1
785
Tumor
-0.1
978
Normal
-0.1
161
Tumor
-0.1
916
Normal
-0.1
364
Normal
-0.1
778
Normal
-0.1
471
Tumor
-0.1
222
Normal
-0.1
554
Normal
-0.1
546
Normal
-0.1
162
Normal
-0.1
474
Normal
-0.1
366
Normal
-0.1
786
Normal
-0.1
415
Tumor
-0.1
618
Normal
-0.1
982
Normal
-0.1
312
Normal
-0.1
824
Normal
-0.1
816
Normal
-0.1
518
Normal
-0.1
956
Normal
-0.1
228
Normal
-0.1
1043
Tumor
-0.1
922
Normal
-0.1
341
Tumor
-0.1
746
Normal
-0.1
738
Normal
-0.1
412
Normal
-0.1
185
Tumor
-0.1
278
Normal
-0.1
662
Normal
-0.1
952
Normal
-0.1
362
Normal
-0.1
862
Normal
-0.1
426
Normal
-0.1
672
Normal
-0.1
414
Normal
-0.2
446
Normal
-0.2
686
Normal
-0.2
817
Tumor
-0.2
1045
Tumor
-0.2
232
Normal
-0.2
884
Normal
-0.2
424
Normal
-0.2
628
Normal
-0.2
484
Normal
-0.2
1026
Normal
-0.2
558
Normal
-0.2
368
Normal
-0.2
422
Normal
-0.2
472
Normal
-0.2
815
Tumor
-0.2
976
Normal
-0.2
172
Normal
-0.2
284
Normal
-0.2
954
Normal
-0.2
138
Normal
-0.2
568
Normal
-0.2
1028
Normal
-0.2
383
Tumor
-0.2
111
Normal
-0.2
487
Tumor
-0.2
462
Normal
-0.2
146
Normal
-0.2
376
Normal
-0.2
866
Normal
-0.2
126
Normal
-0.2
384
Normal
-0.2
434
Normal
-0.2
388
Normal
-0.2
314
Normal
-0.2
298
Normal
-0.2
714
Normal
-0.2
918
Normal
-0.2
968
Normal
-0.2
742
Normal
-0.2
456
Normal
-0.2
1046
Normal
-0.2
217
Tumor
-0.2
1016
Normal
-0.3
661
Tumor
-0.3
857
Tumor
-0.3
444
Normal
-0.3
574
Normal
-0.3
448
Normal
-0.3
142
Normal
-0.3
352
Normal
-0.3
955
Tumor
-0.3
975
Tumor
-0.3
882
Normal
-0.3
211
Tumor
-0.3
268
Normal
-0.3
342
Normal
-0.3
447
Tumor
-0.3
878
Normal
-0.3
723
Tumor
-0.3
921
Tumor
-0.3
468
Normal
-0.3
874
Normal
-0.3
494
Normal
-0.3
125
Tumor
-0.3
984
Normal
-0.3
124
Normal
-0.3
488
Normal
-0.3
396
Normal
-0.3
818
Normal
-0.3
452
Normal
-0.3
224
Normal
-0.3
286
Normal
-0.3
698
Normal
-0.3
636
Normal
-0.3
1027
Tumor
-0.3
527
Tumor
-0.3
354
Normal
-0.4
966
Normal
-0.4
524
Normal
-0.4
924
Normal
-0.4
192
Normal
-0.4
498
Normal
-0.4
141
Tumor
-0.4
344
Normal
-0.4
135
Tumor
-0.4
186
Normal
-0.4
262
Normal
-0.4
445
Tumor
-0.4
943
Tumor
-0.4
1015
Tumor
-0.4
478
Normal
-0.4
386
Normal
-0.4
563
Tumor
-0.4
627
Tumor
-0.4
536
Normal
-0.4
1044
Normal
-0.4
852
Normal
-0.4
311
Tumor
-0.5
394
Normal
-0.5
461
Tumor
-0.5
455
Tumor
-0.5
137
Tumor
-0.5
392
Normal
-0.5
515
Tumor
-0.5
814
Normal
-0.5
863
Tumor
-0.5
343
Tumor
-0.6
332
Normal
-0.6
737
Tumor
-0.6
538
Normal
-0.6
917
Tumor
-0.6
421
Tumor
-0.6
545
Tumor
-0.6
218
Normal
-0.6
425
Tumor
-0.6
283
Tumor
-0.6
492
Normal
-0.6
443
Tumor
-0.7
813
Tumor
-0.7
744
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
