MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.6 nTPM
HPA Brain:10.8 nTPM
GTEx:11.6 nTPM
FANTOM5:11.6 Scaled Tags Per Million
Pig:4.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 10.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.8
2411 Female, age 72, unknown 12.6
1827 Male, age 72, unknown 12.4
2586 Male, age 75, left hemisphere 12.3
1830 Male, age 51, unknown 11.7
2019 Male, age 18, unknown 10.8
1833 Male, age 53, unknown 9.9
2828 Female, age 72, unknown 9.8
1870 Female, age 42, unknown 9.7
2219 Male, age 76, both hemispheres 9.5
2666 Male, age 74, left hemisphere 9.0
Dorsal raphe nucleus
nTPM: 9.2
2016 Female, age 72, unknown 11.5
2047 Male, age 72, unknown 9.9
1828 Male, age 53, unknown 8.9
2750 Male, age 76, both hemispheres 8.6
2298 Female, age 72, unknown 7.4
Inferior colliculus
nTPM: 9.9
2849 Male, age 72, unknown 11.0
1890 Male, age 53, unknown 10.5
1848 Female, age 42, unknown 10.1
2097 Female, age 72, unknown 8.2
Median raphe nucleus
nTPM: 9.5
2220 Male, age 76, midline 9.5
Periaquaductal grey, anterior
nTPM: 10.1
1947 Male, age 18, unknown 10.3
1795 Male, age 51, unknown 10.1
2502 Female, age 75, unknown 10.0
Periaquaductal grey, dorsal
nTPM: 9.2
1840 Male, age 53, unknown 10.5
1831 Male, age 72, unknown 9.5
2464 Female, age 72, unknown 8.6
2850 Male, age 76, both hemispheres 8.1
Periaquaductal grey, lateral
nTPM: 9.7
2053 Male, age 18, unknown 12.0
2140 Male, age 76, both hemispheres 8.8
2272 Male, age 74, both hemispheres 8.2
Pretectal area
nTPM: 10.1
2316 Male, age 76, right hemisphere 13.0
2825 Male, age 18, unknown 11.1
2007 Male, age 72, unknown 10.8
1816 Male, age 51, unknown 10.1
2224 Female, age 72, unknown 10.1
2407 Male, age 75, both hemispheres 9.9
1815 Male, age 53, unknown 9.5
1944 Female, age 72, unknown 9.4
1817 Female, age 42, unknown 9.0
2667 Female, age 75, unknown 9.0
2273 Male, age 74, both hemispheres 8.9
Red nucleus
nTPM: 10.4
2588 Male, age 74, left hemisphere 12.6
2503 Female, age 72, unknown 11.4
1904 Male, age 53, unknown 11.3
1954 Female, age 42, unknown 10.8
2823 Male, age 76, right hemisphere 10.8
1865 Male, age 51, unknown 10.6
2584 Male, age 75, left hemisphere 10.4
2227 Male, age 72, unknown 10.0
2725 Female, age 75, unknown 9.8
1821 Female, age 72, unknown 9.5
2769 Male, age 72, unknown 9.1
2785 Male, age 18, unknown 8.6
Substantia nigra
nTPM: 9.3
2590 Female, age 75, unknown 13.6
2583 Male, age 75, right hemisphere 11.1
2409 Female, age 72, unknown 10.6
2665 Male, age 74, both hemispheres 9.6
1916 Female, age 42, unknown 9.4
1941 Male, age 53, unknown 9.1
1889 Female, age 72, unknown 8.6
1851 Male, age 51, unknown 8.3
2699 Male, age 18, unknown 7.1
2241 Male, age 72, unknown 5.9
Superior colliculus
nTPM: 9.8
2664 Male, age 75, both hemispheres 11.9
1995 Male, age 72, unknown 11.1
2261 Male, age 18, unknown 10.4
1895 Male, age 76, right hemisphere 10.2
1839 Male, age 51, unknown 9.6
1913 Female, age 42, unknown 9.6
2587 Male, age 74, left hemisphere 9.3
1796 Male, age 53, unknown 9.2
2087 Female, age 72, unknown 9.2
2668 Female, age 75, unknown 7.7
Ventral tegmental area
nTPM: 9.7
2410 Female, age 72, unknown 11.8
1915 Female, age 42, unknown 11.3
1942 Male, age 51, unknown 9.5
2021 Male, age 53, unknown 9.1
2223 Female, age 72, unknown 8.8
2218 Male, age 76, both hemispheres 7.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.6
Samples: 139

Max nTPM: 23.4
Min nTPM: 6.2
Std nTPM: 3.0
Median nTPM: 11.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 23.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 21.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 19.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 19.4
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 18.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 17.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 17.3
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 17.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 16.8
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 16.5
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 16.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 11.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.6
FF:10158-103A5 76 years, female 11.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 4.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.6
Samples: 4

Max nTPM: 5.8
Min nTPM: 3.0
Sample A Female 3.0
Sample B Female 4.9
Sample C Male 4.5
Sample D Male 5.8
Midbrain
nTPM: 4.5
Samples: 4

Max nTPM: 5.4
Min nTPM: 4.0
Sample A Female 4.0
Sample B Female 4.6
Sample C Male 4.1
Sample D Male 5.4
Periaqueductal gray
nTPM: 4.8
Samples: 3

Max nTPM: 5.1
Min nTPM: 4.4
Sample B Female 5.0
Sample C Male 4.4
Sample D Male 5.1
Superior colliculi
nTPM: 4.2
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.5
Sample A Female 3.5
Sample B Female 4.5
Sample C Male 4.4
Sample D Male 4.5

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