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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNRPB is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
155.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
722.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
622.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
597.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
465.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
448.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
407.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
404.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
396.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
395.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
382.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
381.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
367.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
364.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
363.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
361.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
358.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
354.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
353.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
352.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
349.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
337.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
335.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
325.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
318.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
314.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
312.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
306.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
305.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
304.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
297.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
294.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
294.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
293.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
293.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
291.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
289.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
287.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
283.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
282.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
279.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
272.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
272.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
269.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
269.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
268.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
268.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
266.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
262.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
257.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
256.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
252.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
252.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
250.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
249.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
249.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
247.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
247.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
247.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
245.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
243.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
241.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
232.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
225.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
224.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
219.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
218.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
216.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
214.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
213.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
213.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
211.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
211.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
211.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
209.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
208.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
207.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
207.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
206.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
205.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
203.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
203.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
202.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
201.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
198.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
198.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
198.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
197.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
197.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
195.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
195.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
195.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
192.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
192.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
192.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
192.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
192.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
190.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
190.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
189.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
188.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
187.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
184.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
184.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
182.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
182.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
181.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
178.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
178.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
177.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
177.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
175.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
175.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
175.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
175.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
173.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
172.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
170.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
170.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
167.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
167.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
167.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
167.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
165.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
162.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
162.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
162.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
161.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
160.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
160.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
160.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
159.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
159.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
158.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
158.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
157.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
157.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
156.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
155.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
153.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
153.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
153.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
152.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
152.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
151.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
151.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
151.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
151.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
149.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
148.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
148.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
147.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
146.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
144.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
144.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
143.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
143.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
143.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
143.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
142.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
142.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
141.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
141.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
140.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
140.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
139.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
138.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
137.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
136.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
136.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
136.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
135.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
135.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
134.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
134.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
133.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
132.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
131.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
131.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
131.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
130.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
129.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
129.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
127.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
127.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
127.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
126.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
125.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
125.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
125.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
125.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
124.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
123.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
123.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
122.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
121.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
121.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
121.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
120.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
118.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
116.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
116.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
116.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
115.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
115.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
115.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
114.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
114.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
114.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
114.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
113.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
112.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
112.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
112.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
112.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
112.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
112.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
111.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
110.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
110.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
109.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
109.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
109.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
108.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
108.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
108.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
107.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
107.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
107.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
107.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
107.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
106.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
106.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
106.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
105.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
105.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
105.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
105.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
105.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
104.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
103.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
103.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
103.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
102.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
101.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
101.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
101.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
100.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
100.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
100.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
99.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
99.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
98.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
98.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
97.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
97.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
96.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
96.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
95.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
95.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
95.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
95.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
94.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
92.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
92.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
92.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
91.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
91.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
91.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
91.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
90.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
90.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
89.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
89.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
89.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
89.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
89.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
89.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
89.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
89.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
88.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
88.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
88.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
87.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
87.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
87.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
85.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
85.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
85.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
84.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
84.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
84.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
83.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
81.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
81.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
81.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
80.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
80.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
80.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
79.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
78.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
78.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
78.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
78.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
76.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
76.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
75.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
75.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
74.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
74.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
73.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
73.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
73.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
72.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
72.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
71.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
70.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
70.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
70.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
70.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
69.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
69.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
69.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
69.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
68.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
67.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
66.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
63.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
63.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
62.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
61.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
61.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
61.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
61.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
60.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
60.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
58.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
58.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
58.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
58.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
57.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
56.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
54.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
53.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
52.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
51.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
51.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
50.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
49.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
47.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
47.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
46.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
46.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
46.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
44.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
44.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
41.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
38.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
38.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
38.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
37.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
35.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNRPB is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
97.4
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
459.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
402.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
334.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
262.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
254.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
240.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
232.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
231.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
214.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
214.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
211.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
204.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
200.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
198.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
198.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
197.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
194.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
190.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
186.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
182.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
178.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
175.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
175.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
174.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
171.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
168.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
164.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
164.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
163.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
161.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
160.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
157.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
154.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
154.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
153.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
152.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
150.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
147.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
147.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
147.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
146.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
144.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
143.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
139.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
138.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
133.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
132.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
132.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
131.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
129.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
127.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
126.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
124.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
122.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
121.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
121.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
121.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
120.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
117.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
116.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
115.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
114.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
113.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
112.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
112.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
111.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
110.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
110.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
109.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
108.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
108.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
108.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
107.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
105.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
105.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
103.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
102.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
102.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
101.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
101.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
101.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
100.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
100.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
99.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
99.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
98.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
98.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
98.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
97.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
96.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
96.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
96.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
95.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
95.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
95.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
95.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
95.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
94.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
91.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
90.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
90.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
90.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
87.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
87.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
87.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
87.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
86.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
85.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
85.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
83.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
83.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
83.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
82.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
82.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
82.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
81.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
81.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
81.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
80.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
80.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
79.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
78.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
78.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
78.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
77.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
77.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
77.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
77.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
76.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
76.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
75.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
75.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
74.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
74.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
73.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
72.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
72.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
71.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
70.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
70.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
70.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
70.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
70.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
69.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
68.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
67.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
66.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
66.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
66.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
66.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
65.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
65.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
65.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
65.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
65.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
64.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
64.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
63.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
63.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
63.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
63.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
63.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
62.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
62.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
62.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
61.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
60.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
60.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
60.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
59.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
58.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
58.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
57.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
57.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
57.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
56.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
56.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
54.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
54.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
54.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
53.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
53.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
53.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
52.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
52.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
52.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
52.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
51.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
51.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
50.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
50.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
49.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
49.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
49.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
48.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
47.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
47.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
47.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
47.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
45.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
45.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
45.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
43.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
42.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
41.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
41.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
41.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
41.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
40.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
39.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
39.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
38.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
36.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
36.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
34.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
33.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
33.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
33.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
33.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
33.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
32.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
30.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
29.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
29.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
27.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
26.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
26.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
25.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
24.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
123
Tumor
1.0
743
Tumor
0.9
661
Tumor
0.8
965
Tumor
0.7
413
Tumor
0.7
983
Tumor
0.7
331
Tumor
0.6
112
Tumor
0.6
285
Tumor
0.6
367
Tumor
0.6
951
Tumor
0.6
131
Tumor
0.6
351
Tumor
0.6
277
Tumor
0.6
443
Tumor
0.6
271
Tumor
0.5
967
Tumor
0.5
385
Tumor
0.5
497
Tumor
0.5
427
Tumor
0.5
545
Tumor
0.5
815
Tumor
0.5
357
Tumor
0.4
135
Tumor
0.4
313
Tumor
0.4
937
Tumor
0.4
141
Tumor
0.4
411
Tumor
0.4
957
Tumor
0.4
423
Tumor
0.4
355
Tumor
0.4
537
Tumor
0.4
671
Tumor
0.4
395
Tumor
0.4
463
Tumor
0.4
533
Tumor
0.4
425
Tumor
0.4
975
Tumor
0.3
881
Tumor
0.3
865
Tumor
0.3
663
Tumor
0.3
817
Tumor
0.3
883
Tumor
0.3
1013
Tumor
0.3
387
Tumor
0.3
267
Tumor
0.3
391
Tumor
0.3
341
Tumor
0.3
393
Tumor
0.3
487
Tumor
0.3
1021
Tumor
0.3
363
Tumor
0.3
297
Tumor
0.3
737
Tumor
0.3
977
Tumor
0.3
665
Tumor
0.3
343
Tumor
0.3
383
Tumor
0.3
877
Tumor
0.3
647
Tumor
0.3
527
Tumor
0.3
567
Tumor
0.2
554
Normal
0.2
217
Tumor
0.2
523
Tumor
0.2
171
Tumor
0.2
375
Tumor
0.2
813
Tumor
0.2
221
Tumor
0.2
473
Tumor
0.2
553
Tumor
0.2
283
Tumor
0.2
814
Normal
0.2
538
Normal
0.2
125
Tumor
0.2
467
Tumor
0.2
921
Tumor
0.2
724
Normal
0.2
911
Tumor
0.2
963
Tumor
0.2
447
Tumor
0.2
113
Tumor
0.2
147
Tumor
0.2
727
Tumor
0.2
137
Tumor
0.2
1031
Tumor
0.2
185
Tumor
0.2
471
Tumor
0.2
477
Tumor
0.2
445
Tumor
0.1
635
Tumor
0.1
1015
Tumor
0.1
231
Tumor
0.1
697
Tumor
0.1
557
Tumor
0.1
571
Tumor
0.1
191
Tumor
0.1
491
Tumor
0.1
744
Normal
0.1
161
Tumor
0.1
195
Tumor
0.1
211
Tumor
0.1
311
Tumor
0.1
433
Tumor
0.1
431
Tumor
0.1
515
Tumor
0.1
344
Normal
0.1
365
Tumor
0.1
124
Normal
0.1
268
Normal
0.1
192
Normal
0.1
261
Tumor
0.1
421
Tumor
0.1
455
Tumor
0.1
913
Tumor
0.1
451
Tumor
0.1
492
Normal
0.1
923
Tumor
0.1
1025
Tumor
0.1
641
Tumor
0.1
465
Tumor
0.0
981
Tumor
0.0
111
Normal
0.0
546
Normal
0.0
127
Tumor
0.0
353
Tumor
0.0
366
Normal
0.0
483
Tumor
0.0
715
Tumor
0.0
534
Normal
0.0
361
Tumor
0.0
535
Tumor
0.0
943
Tumor
0.0
368
Normal
0.0
434
Normal
0.0
213
Tumor
0.0
257
Tumor
0.0
662
Normal
0.0
461
Tumor
0.0
422
Normal
0.0
388
Normal
0.0
672
Normal
0.0
223
Tumor
0.0
444
Normal
0.0
342
Normal
0.0
126
Normal
0.0
394
Normal
0.0
664
Normal
0.0
376
Normal
0.0
912
Normal
0.0
741
Tumor
0.0
146
Normal
0.0
446
Normal
0.0
878
Normal
0.0
925
Tumor
0.0
128
Normal
0.0
114
Normal
0.0
851
Tumor
0.0
493
Tumor
0.0
955
Tumor
0.0
666
Normal
0.0
392
Normal
0.0
746
Normal
0.0
352
Normal
0.0
424
Normal
0.0
617
Tumor
0.0
1041
Tumor
0.0
145
Tumor
0.0
525
Tumor
0.0
861
Tumor
0.0
386
Normal
-0.1
136
Normal
-0.1
742
Normal
-0.1
1043
Tumor
-0.1
227
Tumor
-0.1
436
Normal
-0.1
172
Normal
-0.1
777
Tumor
-0.1
396
Normal
-0.1
873
Tumor
-0.1
648
Normal
-0.1
755
Tumor
-0.1
917
Tumor
-0.1
517
Tumor
-0.1
384
Normal
-0.1
464
Normal
-0.1
414
Normal
-0.1
435
Tumor
-0.1
1014
Normal
-0.1
953
Tumor
-0.1
432
Normal
-0.1
695
Tumor
-0.1
915
Tumor
-0.1
685
Tumor
-0.1
966
Normal
-0.1
222
Normal
-0.1
823
Tumor
-0.1
314
Normal
-0.1
428
Normal
-0.1
162
Normal
-0.1
132
Normal
-0.1
884
Normal
-0.1
721
Tumor
-0.1
262
Normal
-0.1
818
Normal
-0.1
563
Tumor
-0.1
882
Normal
-0.1
426
Normal
-0.1
214
Normal
-0.1
358
Normal
-0.1
528
Normal
-0.1
914
Normal
-0.1
354
Normal
-0.1
298
Normal
-0.1
218
Normal
-0.1
778
Normal
-0.1
615
Tumor
-0.1
232
Normal
-0.1
332
Normal
-0.1
858
Normal
-0.1
573
Tumor
-0.2
452
Normal
-0.2
785
Tumor
-0.2
738
Normal
-0.2
824
Normal
-0.2
186
Normal
-0.2
954
Normal
-0.2
1026
Normal
-0.2
952
Normal
-0.2
944
Normal
-0.2
272
Normal
-0.2
867
Tumor
-0.2
362
Normal
-0.2
327
Tumor
-0.2
142
Normal
-0.2
258
Normal
-0.2
196
Normal
-0.2
984
Normal
-0.2
138
Normal
-0.2
816
Normal
-0.2
188
Normal
-0.2
456
Normal
-0.2
728
Normal
-0.2
1042
Normal
-0.2
312
Normal
-0.2
968
Normal
-0.2
982
Normal
-0.2
498
Normal
-0.2
356
Normal
-0.2
1028
Normal
-0.2
1016
Normal
-0.2
627
Tumor
-0.2
148
Normal
-0.2
488
Normal
-0.2
415
Tumor
-0.2
513
Tumor
-0.2
484
Normal
-0.3
978
Normal
-0.3
1045
Tumor
-0.3
278
Normal
-0.3
698
Normal
-0.3
852
Normal
-0.3
536
Normal
-0.3
187
Tumor
-0.3
956
Normal
-0.3
745
Tumor
-0.3
1046
Normal
-0.3
866
Normal
-0.3
723
Tumor
-0.3
874
Normal
-0.3
412
Normal
-0.3
1027
Tumor
-0.3
756
Normal
-0.3
1022
Normal
-0.3
474
Normal
-0.3
857
Tumor
-0.3
574
Normal
-0.3
938
Normal
-0.3
448
Normal
-0.3
976
Normal
-0.3
618
Normal
-0.3
328
Normal
-0.3
616
Normal
-0.3
636
Normal
-0.3
468
Normal
-0.3
416
Normal
-0.3
958
Normal
-0.3
924
Normal
-0.3
568
Normal
-0.3
1032
Normal
-0.3
494
Normal
-0.4
466
Normal
-0.4
364
Normal
-0.4
713
Tumor
-0.4
628
Normal
-0.4
786
Normal
-0.4
286
Normal
-0.4
918
Normal
-0.4
964
Normal
-0.4
642
Normal
-0.4
462
Normal
-0.4
564
Normal
-0.4
1044
Normal
-0.4
558
Normal
-0.4
228
Normal
-0.4
922
Normal
-0.4
284
Normal
-0.4
526
Normal
-0.4
864
Normal
-0.4
926
Normal
-0.4
572
Normal
-0.4
862
Normal
-0.4
472
Normal
-0.5
516
Normal
-0.5
212
Normal
-0.5
518
Normal
-0.5
714
Normal
-0.5
722
Normal
-0.5
916
Normal
-0.5
524
Normal
-0.5
514
Normal
-0.5
224
Normal
-0.5
863
Tumor
-0.6
481
Tumor
-0.6
686
Normal
-0.6
716
Normal
-0.6
482
Normal
-0.6
478
Normal
-0.6
696
Normal
-0.6
868
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.