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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CENPB is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
118.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
114.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
96.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
80.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
76.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
68.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
65.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
65.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
64.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
63.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
63.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
62.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
61.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
58.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
57.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
56.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
55.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
55.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
54.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
53.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
53.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
52.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
52.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
51.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
50.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
49.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
49.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
49.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
48.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
48.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
48.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
48.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
47.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
47.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
47.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
47.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
47.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
47.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
46.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
46.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
46.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
45.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
44.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
44.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
44.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
44.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
43.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
43.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
43.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
43.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
42.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
42.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
42.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
42.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
42.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
41.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
41.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
41.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
41.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
41.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
41.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
40.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
40.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
40.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
40.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
40.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
39.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
39.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
39.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
38.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
38.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
38.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
38.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
38.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
37.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
37.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
37.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
37.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
37.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
37.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
37.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
37.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
36.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
36.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
36.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
36.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
36.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
36.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
36.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
36.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
35.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
35.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
35.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
35.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
35.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
35.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
35.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
35.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
35.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
35.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
35.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
35.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
34.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
34.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
34.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
34.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
34.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
34.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
34.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
34.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
33.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
33.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
33.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
33.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
33.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
33.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
33.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
33.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
33.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
33.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
33.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
33.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
33.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
33.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
32.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
32.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
32.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
32.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
32.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
32.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
32.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
31.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
31.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
31.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
31.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
31.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
30.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
30.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
30.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
30.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
30.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
30.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
30.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
30.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
30.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
30.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
30.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
30.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
30.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
30.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
30.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
30.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
29.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
29.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
29.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
29.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
29.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
29.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
29.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
29.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
29.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
28.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
28.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
28.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
28.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
28.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
28.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
28.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
28.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
28.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
28.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
28.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
28.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
28.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
28.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
28.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
28.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
28.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
27.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
27.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
27.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
27.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
27.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
26.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
26.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
26.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
26.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
26.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
26.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
26.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
26.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
25.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
25.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
25.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
24.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
24.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
24.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
24.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
24.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
24.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
24.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
24.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
24.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
24.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
24.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
24.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
23.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
23.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
23.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
23.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
23.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
23.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
23.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
23.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
22.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
22.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
22.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
22.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
22.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
22.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
21.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
21.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
21.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
21.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
21.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
21.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
21.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
20.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
20.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
20.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
19.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
19.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
19.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
18.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
18.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
18.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
16.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
15.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CENPB is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.5
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
63.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
59.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
59.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
53.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
51.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
48.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
46.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
46.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
43.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
41.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
41.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
41.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
40.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
39.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
38.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
38.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
38.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
37.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
35.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
35.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
34.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
33.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
33.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
32.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
32.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
32.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
32.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
31.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
31.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
30.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
30.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
30.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
30.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
30.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
30.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
29.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
29.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
29.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
28.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
28.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
28.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
28.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
27.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
27.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
27.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
26.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
26.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
26.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
25.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
25.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
25.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
25.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
24.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
23.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
23.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
23.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
21.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
21.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
19.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
351
Tumor
1.3
497
Tumor
1.1
473
Tumor
1.0
161
Tumor
1.0
487
Tumor
0.9
965
Tumor
0.9
647
Tumor
0.9
313
Tumor
0.9
977
Tumor
0.9
663
Tumor
0.9
355
Tumor
0.8
937
Tumor
0.8
953
Tumor
0.7
411
Tumor
0.7
123
Tumor
0.7
431
Tumor
0.7
357
Tumor
0.7
1041
Tumor
0.7
445
Tumor
0.7
1015
Tumor
0.7
615
Tumor
0.6
695
Tumor
0.6
433
Tumor
0.6
635
Tumor
0.6
171
Tumor
0.6
127
Tumor
0.6
413
Tumor
0.6
671
Tumor
0.6
231
Tumor
0.6
483
Tumor
0.5
1013
Tumor
0.5
367
Tumor
0.5
523
Tumor
0.5
267
Tumor
0.5
957
Tumor
0.5
467
Tumor
0.5
425
Tumor
0.5
343
Tumor
0.5
141
Tumor
0.4
283
Tumor
0.4
131
Tumor
0.4
883
Tumor
0.4
383
Tumor
0.4
427
Tumor
0.4
211
Tumor
0.4
967
Tumor
0.4
361
Tumor
0.4
743
Tumor
0.3
375
Tumor
0.3
867
Tumor
0.3
217
Tumor
0.3
785
Tumor
0.3
513
Tumor
0.3
913
Tumor
0.3
423
Tumor
0.3
331
Tumor
0.3
943
Tumor
0.3
443
Tumor
0.3
777
Tumor
0.3
911
Tumor
0.3
877
Tumor
0.3
455
Tumor
0.3
715
Tumor
0.3
665
Tumor
0.3
727
Tumor
0.3
415
Tumor
0.3
341
Tumor
0.3
963
Tumor
0.2
493
Tumor
0.2
477
Tumor
0.2
533
Tumor
0.2
755
Tumor
0.2
857
Tumor
0.2
863
Tumor
0.2
981
Tumor
0.2
391
Tumor
0.2
984
Normal
0.2
571
Tumor
0.2
865
Tumor
0.2
1045
Tumor
0.2
491
Tumor
0.2
925
Tumor
0.2
277
Tumor
0.1
385
Tumor
0.1
1031
Tumor
0.1
137
Tumor
0.1
545
Tumor
0.1
195
Tumor
0.1
463
Tumor
0.1
393
Tumor
0.1
191
Tumor
0.1
434
Normal
0.1
444
Normal
0.1
125
Tumor
0.1
112
Tumor
0.1
524
Normal
0.1
446
Normal
0.1
573
Tumor
0.1
461
Tumor
0.1
481
Tumor
0.1
921
Tumor
0.1
261
Tumor
0.1
187
Tumor
0.1
185
Tumor
0.1
815
Tumor
0.1
192
Normal
0.1
697
Tumor
0.1
365
Tumor
0.1
535
Tumor
0.0
975
Tumor
0.0
685
Tumor
0.0
873
Tumor
0.0
741
Tumor
0.0
213
Tumor
0.0
724
Normal
0.0
517
Tumor
0.0
983
Tumor
0.0
661
Tumor
0.0
721
Tumor
0.0
465
Tumor
0.0
227
Tumor
0.0
563
Tumor
0.0
881
Tumor
0.0
884
Normal
0.0
126
Normal
0.0
1027
Tumor
0.0
312
Normal
0.0
135
Tumor
0.0
744
Normal
0.0
1043
Tumor
0.0
738
Normal
0.0
395
Tumor
0.0
268
Normal
0.0
435
Tumor
0.0
525
Tumor
0.0
516
Normal
0.0
421
Tumor
0.0
221
Tumor
0.0
851
Tumor
0.0
478
Normal
-0.1
432
Normal
-0.1
285
Tumor
-0.1
536
Normal
-0.1
915
Tumor
-0.1
756
Normal
-0.1
428
Normal
-0.1
1016
Normal
-0.1
297
Tumor
-0.1
1021
Tumor
-0.1
515
Tumor
-0.1
271
Tumor
-0.1
498
Normal
-0.1
982
Normal
-0.1
813
Tumor
-0.1
627
Tumor
-0.1
146
Normal
-0.1
818
Normal
-0.1
823
Tumor
-0.1
492
Normal
-0.1
352
Normal
-0.1
471
Tumor
-0.1
778
Normal
-0.1
1014
Normal
-0.1
451
Tumor
-0.1
145
Tumor
-0.1
814
Normal
-0.1
537
Tumor
-0.1
978
Normal
-0.2
223
Tumor
-0.2
344
Normal
-0.2
414
Normal
-0.2
314
Normal
-0.2
917
Tumor
-0.2
162
Normal
-0.2
272
Normal
-0.2
258
Normal
-0.2
858
Normal
-0.2
426
Normal
-0.2
384
Normal
-0.2
113
Tumor
-0.2
817
Tumor
-0.2
447
Tumor
-0.2
923
Tumor
-0.2
672
Normal
-0.2
538
Normal
-0.2
696
Normal
-0.2
424
Normal
-0.2
737
Tumor
-0.2
232
Normal
-0.2
196
Normal
-0.2
728
Normal
-0.2
641
Tumor
-0.2
534
Normal
-0.2
138
Normal
-0.2
742
Normal
-0.2
955
Tumor
-0.2
188
Normal
-0.2
148
Normal
-0.2
882
Normal
-0.2
284
Normal
-0.2
212
Normal
-0.2
257
Tumor
-0.2
228
Normal
-0.2
852
Normal
-0.2
958
Normal
-0.2
951
Tumor
-0.2
386
Normal
-0.2
114
Normal
-0.2
666
Normal
-0.2
298
Normal
-0.3
546
Normal
-0.3
514
Normal
-0.3
262
Normal
-0.3
713
Tumor
-0.3
224
Normal
-0.3
218
Normal
-0.3
387
Tumor
-0.3
147
Tumor
-0.3
648
Normal
-0.3
722
Normal
-0.3
526
Normal
-0.3
786
Normal
-0.3
714
Normal
-0.3
484
Normal
-0.3
746
Normal
-0.3
353
Tumor
-0.3
664
Normal
-0.3
527
Tumor
-0.3
214
Normal
-0.3
553
Tumor
-0.3
874
Normal
-0.3
723
Tumor
-0.3
912
Normal
-0.3
448
Normal
-0.3
557
Tumor
-0.3
364
Normal
-0.3
366
Normal
-0.3
864
Normal
-0.3
422
Normal
-0.3
332
Normal
-0.3
186
Normal
-0.3
518
Normal
-0.3
954
Normal
-0.3
368
Normal
-0.3
686
Normal
-0.3
488
Normal
-0.3
824
Normal
-0.3
396
Normal
-0.3
662
Normal
-0.3
861
Tumor
-0.3
172
Normal
-0.3
328
Normal
-0.3
128
Normal
-0.3
124
Normal
-0.3
964
Normal
-0.3
222
Normal
-0.3
574
Normal
-0.3
472
Normal
-0.3
956
Normal
-0.3
868
Normal
-0.3
464
Normal
-0.3
494
Normal
-0.3
1042
Normal
-0.4
922
Normal
-0.4
628
Normal
-0.4
968
Normal
-0.4
866
Normal
-0.4
924
Normal
-0.4
564
Normal
-0.4
311
Tumor
-0.4
358
Normal
-0.4
617
Tumor
-0.4
926
Normal
-0.4
1046
Normal
-0.4
412
Normal
-0.4
642
Normal
-0.4
698
Normal
-0.4
392
Normal
-0.4
363
Tumor
-0.4
111
Normal
-0.4
976
Normal
-0.4
938
Normal
-0.4
966
Normal
-0.4
342
Normal
-0.4
354
Normal
-0.4
878
Normal
-0.4
436
Normal
-0.4
376
Normal
-0.4
416
Normal
-0.4
327
Tumor
-0.4
136
Normal
-0.4
462
Normal
-0.4
618
Normal
-0.4
716
Normal
-0.4
1032
Normal
-0.4
558
Normal
-0.5
482
Normal
-0.5
362
Normal
-0.5
528
Normal
-0.5
1028
Normal
-0.5
916
Normal
-0.5
944
Normal
-0.5
286
Normal
-0.5
636
Normal
-0.5
862
Normal
-0.5
468
Normal
-0.5
474
Normal
-0.5
1026
Normal
-0.5
568
Normal
-0.5
572
Normal
-0.5
142
Normal
-0.5
616
Normal
-0.5
356
Normal
-0.5
278
Normal
-0.5
816
Normal
-0.5
918
Normal
-0.5
456
Normal
-0.5
1025
Tumor
-0.5
952
Normal
-0.5
132
Normal
-0.6
394
Normal
-0.6
554
Normal
-0.6
388
Normal
-0.6
914
Normal
-0.6
1022
Normal
-0.6
1044
Normal
-0.6
567
Tumor
-0.7
466
Normal
-0.7
745
Tumor
-0.7
452
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
