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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PANK2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
29.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PANK2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.7
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
50.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
40.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
29.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
0.6
332
Normal
0.6
647
Tumor
0.5
314
Normal
0.4
727
Tumor
0.4
271
Tumor
0.4
455
Tumor
0.4
267
Tumor
0.4
138
Normal
0.4
618
Normal
0.4
456
Normal
0.4
518
Normal
0.4
628
Normal
0.4
884
Normal
0.4
564
Normal
0.4
617
Tumor
0.4
411
Tumor
0.4
298
Normal
0.4
488
Normal
0.3
434
Normal
0.3
484
Normal
0.3
127
Tumor
0.3
196
Normal
0.3
123
Tumor
0.3
883
Tumor
0.3
738
Normal
0.3
568
Normal
0.3
937
Tumor
0.3
746
Normal
0.3
952
Normal
0.3
882
Normal
0.3
262
Normal
0.3
124
Normal
0.3
146
Normal
0.3
342
Normal
0.3
616
Normal
0.3
432
Normal
0.3
114
Normal
0.3
1043
Tumor
0.3
558
Normal
0.3
574
Normal
0.3
232
Normal
0.3
218
Normal
0.3
695
Tumor
0.3
977
Tumor
0.3
312
Normal
0.3
648
Normal
0.3
171
Tumor
0.3
396
Normal
0.2
778
Normal
0.2
491
Tumor
0.2
258
Normal
0.2
723
Tumor
0.2
366
Normal
0.2
492
Normal
0.2
964
Normal
0.2
664
Normal
0.2
272
Normal
0.2
572
Normal
0.2
728
Normal
0.2
955
Tumor
0.2
278
Normal
0.2
1022
Normal
0.2
1021
Tumor
0.2
966
Normal
0.2
128
Normal
0.2
642
Normal
0.2
636
Normal
0.2
136
Normal
0.2
516
Normal
0.2
956
Normal
0.2
743
Tumor
0.2
391
Tumor
0.2
571
Tumor
0.2
132
Normal
0.2
462
Normal
0.2
1032
Normal
0.2
142
Normal
0.2
641
Tumor
0.2
112
Tumor
0.2
111
Normal
0.2
386
Normal
0.2
661
Tumor
0.2
384
Normal
0.2
816
Normal
0.2
938
Normal
0.2
422
Normal
0.2
126
Normal
0.2
467
Tumor
0.2
1042
Normal
0.2
911
Tumor
0.2
815
Tumor
0.2
436
Normal
0.2
464
Normal
0.2
925
Tumor
0.1
494
Normal
0.1
186
Normal
0.1
424
Normal
0.1
724
Normal
0.1
465
Tumor
0.1
125
Tumor
0.1
924
Normal
0.1
557
Tumor
0.1
968
Normal
0.1
446
Normal
0.1
268
Normal
0.1
1031
Tumor
0.1
912
Normal
0.1
914
Normal
0.1
1028
Normal
0.1
755
Tumor
0.1
423
Tumor
0.1
483
Tumor
0.1
413
Tumor
0.1
147
Tumor
0.1
214
Normal
0.1
671
Tumor
0.1
615
Tumor
0.1
662
Normal
0.1
331
Tumor
0.1
517
Tumor
0.1
881
Tumor
0.1
917
Tumor
0.1
466
Normal
0.1
953
Tumor
0.1
1026
Normal
0.1
777
Tumor
0.1
1015
Tumor
0.1
663
Tumor
0.1
742
Normal
0.1
414
Normal
0.1
553
Tumor
0.1
222
Normal
0.1
376
Normal
0.1
297
Tumor
0.1
877
Tumor
0.1
535
Tumor
0.1
786
Normal
0.1
958
Normal
0.1
672
Normal
0.1
698
Normal
0.1
367
Tumor
0.1
428
Normal
0.1
388
Normal
0.1
433
Tumor
0.1
468
Normal
0.1
487
Tumor
0.1
394
Normal
0.1
355
Tumor
0.1
918
Normal
0.1
756
Normal
0.1
351
Tumor
0.1
426
Normal
0.1
666
Normal
0.1
921
Tumor
0.1
1016
Normal
0.1
145
Tumor
0.1
113
Tumor
0.0
976
Normal
0.0
474
Normal
0.0
472
Normal
0.0
352
Normal
0.0
536
Normal
0.0
858
Normal
0.0
392
Normal
0.0
362
Normal
0.0
277
Tumor
0.0
435
Tumor
0.0
537
Tumor
0.0
524
Normal
0.0
356
Normal
0.0
497
Tumor
0.0
528
Normal
0.0
943
Tumor
0.0
515
Tumor
0.0
344
Normal
0.0
1013
Tumor
0.0
665
Tumor
0.0
916
Normal
0.0
313
Tumor
0.0
188
Normal
0.0
444
Normal
0.0
573
Tumor
0.0
452
Normal
0.0
285
Tumor
0.0
185
Tumor
0.0
358
Normal
0.0
635
Tumor
0.0
863
Tumor
0.0
563
Tumor
0.0
412
Normal
0.0
448
Normal
0.0
862
Normal
0.0
851
Tumor
0.0
878
Normal
0.0
231
Tumor
0.0
192
Normal
0.0
172
Normal
0.0
922
Normal
0.0
482
Normal
0.0
981
Tumor
0.0
461
Tumor
0.0
714
Normal
0.0
416
Normal
0.0
744
Normal
0.0
221
Tumor
0.0
957
Tumor
0.0
481
Tumor
0.0
963
Tumor
0.0
383
Tumor
0.0
1027
Tumor
0.0
284
Normal
0.0
868
Normal
0.0
697
Tumor
0.0
217
Tumor
0.0
741
Tumor
0.0
713
Tumor
0.0
686
Normal
0.0
984
Normal
0.0
915
Tumor
0.0
227
Tumor
0.0
212
Normal
0.0
328
Normal
0.0
286
Normal
0.0
431
Tumor
0.0
534
Normal
0.0
913
Tumor
0.0
141
Tumor
0.0
477
Tumor
0.0
857
Tumor
0.0
361
Tumor
-0.1
1046
Normal
-0.1
385
Tumor
-0.1
498
Normal
-0.1
1044
Normal
-0.1
864
Normal
-0.1
983
Tumor
-0.1
364
Normal
-0.1
415
Tumor
-0.1
283
Tumor
-0.1
817
Tumor
-0.1
1045
Tumor
-0.1
554
Normal
-0.1
162
Normal
-0.1
261
Tumor
-0.1
951
Tumor
-0.1
944
Normal
-0.1
716
Normal
-0.1
722
Normal
-0.1
368
Normal
-0.1
327
Tumor
-0.1
978
Normal
-0.1
737
Tumor
-0.1
1014
Normal
-0.1
195
Tumor
-0.1
365
Tumor
-0.1
785
Tumor
-0.1
982
Normal
-0.1
526
Normal
-0.1
228
Normal
-0.1
224
Normal
-0.1
445
Tumor
-0.1
965
Tumor
-0.1
867
Tumor
-0.1
191
Tumor
-0.1
852
Normal
-0.1
463
Tumor
-0.1
451
Tumor
-0.1
357
Tumor
-0.1
866
Normal
-0.1
375
Tumor
-0.1
148
Normal
-0.1
546
Normal
-0.1
975
Tumor
-0.1
818
Normal
-0.1
471
Tumor
-0.1
873
Tumor
-0.1
523
Tumor
-0.1
131
Tumor
-0.1
213
Tumor
-0.1
627
Tumor
-0.2
257
Tumor
-0.2
696
Normal
-0.2
161
Tumor
-0.2
923
Tumor
-0.2
824
Normal
-0.2
514
Normal
-0.2
393
Tumor
-0.2
341
Tumor
-0.2
926
Normal
-0.2
721
Tumor
-0.2
395
Tumor
-0.2
211
Tumor
-0.2
1025
Tumor
-0.2
567
Tumor
-0.2
954
Normal
-0.2
525
Tumor
-0.2
715
Tumor
-0.2
493
Tumor
-0.2
545
Tumor
-0.2
745
Tumor
-0.2
421
Tumor
-0.2
363
Tumor
-0.2
874
Normal
-0.2
354
Normal
-0.2
861
Tumor
-0.2
447
Tumor
-0.2
538
Normal
-0.2
223
Tumor
-0.2
814
Normal
-0.2
533
Tumor
-0.3
311
Tumor
-0.3
685
Tumor
-0.3
823
Tumor
-0.3
1041
Tumor
-0.3
187
Tumor
-0.3
343
Tumor
-0.3
387
Tumor
-0.3
353
Tumor
-0.3
425
Tumor
-0.3
478
Normal
-0.3
135
Tumor
-0.4
473
Tumor
-0.4
813
Tumor
-0.4
137
Tumor
-0.4
427
Tumor
-0.4
865
Tumor
-0.5
443
Tumor
-0.5
513
Tumor
-0.6
527
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
