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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SYMPK is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
185.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
101.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
62.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
53.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
47.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
44.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
44.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
44.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
41.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
39.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
39.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
39.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
36.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
36.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
36.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
35.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
35.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
35.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
35.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
34.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
34.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
34.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
33.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
33.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
33.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
33.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
33.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
32.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
31.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
31.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
31.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
30.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
30.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
30.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
30.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
30.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
29.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
29.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
29.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
28.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
28.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
28.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
28.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
28.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
28.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
28.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
27.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
27.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
27.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
27.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
26.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
26.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
26.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
25.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
25.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
25.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
25.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
23.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
23.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
23.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
23.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
23.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
23.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
23.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
21.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
20.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
19.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SYMPK is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.7
Number of samples
231
Samples
Sample
Description
TPM
DO50844
0 years, male, NA, stage:4, alive, 300 days
252.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
66.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
66.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
58.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
55.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
54.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
53.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
48.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
46.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
44.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
44.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
44.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
41.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
41.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
38.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
37.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
35.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
35.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
35.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
34.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
33.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
33.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
33.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
31.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
31.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
30.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
30.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
29.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
29.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
29.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
28.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
28.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
27.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
27.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
27.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
27.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
27.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
26.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
26.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
26.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
26.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
26.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
26.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
25.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
25.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
25.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
24.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
23.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
23.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
23.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
23.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
23.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
22.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
22.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
21.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
20.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
19.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
1.0
743
Tumor
0.9
497
Tumor
0.8
331
Tumor
0.7
661
Tumor
0.7
131
Tumor
0.7
463
Tumor
0.7
951
Tumor
0.7
367
Tumor
0.7
965
Tumor
0.6
877
Tumor
0.6
413
Tumor
0.6
351
Tumor
0.6
277
Tumor
0.6
815
Tumor
0.5
285
Tumor
0.5
385
Tumor
0.5
411
Tumor
0.5
977
Tumor
0.5
983
Tumor
0.5
567
Tumor
0.5
357
Tumor
0.5
975
Tumor
0.5
571
Tumor
0.5
865
Tumor
0.5
313
Tumor
0.5
1031
Tumor
0.5
271
Tumor
0.4
227
Tumor
0.4
881
Tumor
0.4
671
Tumor
0.4
817
Tumor
0.4
724
Normal
0.4
665
Tumor
0.4
141
Tumor
0.4
427
Tumor
0.4
537
Tumor
0.4
431
Tumor
0.4
953
Tumor
0.4
663
Tumor
0.4
943
Tumor
0.4
267
Tumor
0.4
517
Tumor
0.3
211
Tumor
0.3
341
Tumor
0.3
363
Tumor
0.3
123
Tumor
0.3
883
Tumor
0.3
221
Tumor
0.3
921
Tumor
0.3
387
Tumor
0.3
425
Tumor
0.3
297
Tumor
0.3
435
Tumor
0.3
383
Tumor
0.3
737
Tumor
0.3
443
Tumor
0.3
112
Tumor
0.3
355
Tumor
0.3
535
Tumor
0.3
727
Tumor
0.3
147
Tumor
0.3
545
Tumor
0.3
635
Tumor
0.3
937
Tumor
0.3
755
Tumor
0.3
641
Tumor
0.3
523
Tumor
0.3
391
Tumor
0.3
447
Tumor
0.3
467
Tumor
0.2
423
Tumor
0.2
1025
Tumor
0.2
213
Tumor
0.2
433
Tumor
0.2
283
Tumor
0.2
647
Tumor
0.2
445
Tumor
0.2
465
Tumor
0.2
867
Tumor
0.2
533
Tumor
0.2
957
Tumor
0.2
1021
Tumor
0.2
125
Tumor
0.2
685
Tumor
0.2
487
Tumor
0.2
231
Tumor
0.2
161
Tumor
0.2
257
Tumor
0.2
553
Tumor
0.2
695
Tumor
0.2
813
Tumor
0.2
135
Tumor
0.2
1013
Tumor
0.1
343
Tumor
0.1
223
Tumor
0.1
851
Tumor
0.1
814
Normal
0.1
455
Tumor
0.1
217
Tumor
0.1
268
Normal
0.1
127
Tumor
0.1
471
Tumor
0.1
1015
Tumor
0.1
963
Tumor
0.1
311
Tumor
0.1
861
Tumor
0.1
473
Tumor
0.1
137
Tumor
0.1
715
Tumor
0.1
491
Tumor
0.1
171
Tumor
0.1
1043
Tumor
0.1
1041
Tumor
0.1
191
Tumor
0.1
375
Tumor
0.1
923
Tumor
0.1
913
Tumor
0.1
461
Tumor
0.1
777
Tumor
0.1
557
Tumor
0.1
493
Tumor
0.1
917
Tumor
0.1
393
Tumor
0.1
261
Tumor
0.1
395
Tumor
0.1
911
Tumor
0.1
823
Tumor
0.0
721
Tumor
0.0
873
Tumor
0.0
353
Tumor
0.0
573
Tumor
0.0
515
Tumor
0.0
785
Tumor
0.0
187
Tumor
0.0
185
Tumor
0.0
444
Normal
0.0
525
Tumor
0.0
361
Tumor
0.0
451
Tumor
0.0
434
Normal
0.0
563
Tumor
0.0
527
Tumor
0.0
741
Tumor
0.0
857
Tumor
0.0
113
Tumor
0.0
332
Normal
0.0
384
Normal
0.0
713
Tumor
0.0
955
Tumor
0.0
192
Normal
0.0
483
Tumor
0.0
272
Normal
0.0
446
Normal
-0.1
258
Normal
-0.1
146
Normal
-0.1
262
Normal
-0.1
744
Normal
-0.1
368
Normal
-0.1
126
Normal
-0.1
697
Tumor
-0.1
366
Normal
-0.1
376
Normal
-0.1
686
Normal
-0.1
314
Normal
-0.1
365
Tumor
-0.1
477
Tumor
-0.1
524
Normal
-0.1
664
Normal
-0.1
915
Tumor
-0.1
432
Normal
-0.1
128
Normal
-0.1
421
Tumor
-0.1
615
Tumor
-0.1
672
Normal
-0.1
925
Tumor
-0.1
352
Normal
-0.1
396
Normal
-0.1
142
Normal
-0.1
662
Normal
-0.1
232
Normal
-0.1
954
Normal
-0.1
145
Tumor
-0.1
1045
Tumor
-0.1
362
Normal
-0.1
534
Normal
-0.1
138
Normal
-0.1
218
Normal
-0.1
966
Normal
-0.1
388
Normal
-0.1
464
Normal
-0.1
344
Normal
-0.1
342
Normal
-0.1
298
Normal
-0.1
415
Tumor
-0.1
114
Normal
-0.1
124
Normal
-0.1
392
Normal
-0.1
863
Tumor
-0.1
284
Normal
-0.2
878
Normal
-0.2
148
Normal
-0.2
278
Normal
-0.2
436
Normal
-0.2
188
Normal
-0.2
648
Normal
-0.2
538
Normal
-0.2
132
Normal
-0.2
196
Normal
-0.2
513
Tumor
-0.2
742
Normal
-0.2
938
Normal
-0.2
745
Tumor
-0.2
666
Normal
-0.2
358
Normal
-0.2
536
Normal
-0.2
195
Tumor
-0.2
944
Normal
-0.2
228
Normal
-0.2
574
Normal
-0.2
738
Normal
-0.2
492
Normal
-0.2
564
Normal
-0.2
526
Normal
-0.2
1027
Tumor
-0.2
1014
Normal
-0.2
1028
Normal
-0.2
1026
Normal
-0.2
356
Normal
-0.2
824
Normal
-0.2
111
Normal
-0.2
1032
Normal
-0.2
858
Normal
-0.2
546
Normal
-0.2
627
Tumor
-0.2
422
Normal
-0.2
212
Normal
-0.2
816
Normal
-0.2
484
Normal
-0.2
786
Normal
-0.2
312
Normal
-0.2
696
Normal
-0.2
222
Normal
-0.2
882
Normal
-0.2
186
Normal
-0.2
617
Tumor
-0.2
716
Normal
-0.2
922
Normal
-0.2
468
Normal
-0.2
728
Normal
-0.2
386
Normal
-0.2
328
Normal
-0.2
636
Normal
-0.2
818
Normal
-0.2
286
Normal
-0.2
224
Normal
-0.2
456
Normal
-0.2
862
Normal
-0.2
722
Normal
-0.2
984
Normal
-0.2
914
Normal
-0.2
354
Normal
-0.2
172
Normal
-0.2
554
Normal
-0.2
884
Normal
-0.2
874
Normal
-0.2
136
Normal
-0.2
466
Normal
-0.2
518
Normal
-0.2
162
Normal
-0.2
981
Tumor
-0.2
866
Normal
-0.2
416
Normal
-0.2
746
Normal
-0.2
514
Normal
-0.2
978
Normal
-0.2
498
Normal
-0.2
327
Tumor
-0.2
714
Normal
-0.2
572
Normal
-0.2
568
Normal
-0.2
394
Normal
-0.2
478
Normal
-0.3
448
Normal
-0.3
412
Normal
-0.3
912
Normal
-0.3
426
Normal
-0.3
864
Normal
-0.3
452
Normal
-0.3
956
Normal
-0.3
916
Normal
-0.3
924
Normal
-0.3
968
Normal
-0.3
976
Normal
-0.3
756
Normal
-0.3
616
Normal
-0.3
481
Tumor
-0.3
516
Normal
-0.3
214
Normal
-0.3
472
Normal
-0.3
1022
Normal
-0.3
723
Tumor
-0.3
558
Normal
-0.3
698
Normal
-0.3
528
Normal
-0.3
364
Normal
-0.3
488
Normal
-0.3
494
Normal
-0.3
778
Normal
-0.3
1016
Normal
-0.3
868
Normal
-0.3
628
Normal
-0.3
964
Normal
-0.3
852
Normal
-0.3
952
Normal
-0.3
918
Normal
-0.3
428
Normal
-0.3
414
Normal
-0.3
474
Normal
-0.3
618
Normal
-0.3
462
Normal
-0.3
926
Normal
-0.3
982
Normal
-0.3
1042
Normal
-0.3
482
Normal
-0.3
1046
Normal
-0.4
642
Normal
-0.4
424
Normal
-0.4
1044
Normal
-0.4
958
Normal
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
