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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MED1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MED1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.7
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
3.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.2
411
Tumor
1.0
957
Tumor
0.9
131
Tumor
0.8
473
Tumor
0.7
351
Tumor
0.7
865
Tumor
0.6
355
Tumor
0.6
1013
Tumor
0.6
967
Tumor
0.6
211
Tumor
0.6
951
Tumor
0.5
953
Tumor
0.5
125
Tumor
0.5
123
Tumor
0.5
943
Tumor
0.5
813
Tumor
0.5
817
Tumor
0.5
357
Tumor
0.5
213
Tumor
0.5
923
Tumor
0.5
127
Tumor
0.5
743
Tumor
0.5
112
Tumor
0.5
425
Tumor
0.5
937
Tumor
0.5
285
Tumor
0.4
161
Tumor
0.4
343
Tumor
0.4
881
Tumor
0.4
271
Tumor
0.4
525
Tumor
0.4
1021
Tumor
0.4
447
Tumor
0.4
535
Tumor
0.4
375
Tumor
0.4
983
Tumor
0.4
883
Tumor
0.4
191
Tumor
0.4
877
Tumor
0.4
663
Tumor
0.4
815
Tumor
0.4
465
Tumor
0.4
221
Tumor
0.4
431
Tumor
0.4
977
Tumor
0.4
1031
Tumor
0.4
665
Tumor
0.4
661
Tumor
0.4
545
Tumor
0.4
497
Tumor
0.4
217
Tumor
0.3
391
Tumor
0.3
963
Tumor
0.3
393
Tumor
0.3
567
Tumor
0.3
461
Tumor
0.3
192
Normal
0.3
227
Tumor
0.3
195
Tumor
0.3
515
Tumor
0.3
267
Tumor
0.3
283
Tumor
0.3
641
Tumor
0.3
171
Tumor
0.3
427
Tumor
0.3
533
Tumor
0.3
313
Tumor
0.3
363
Tumor
0.3
385
Tumor
0.3
231
Tumor
0.3
113
Tumor
0.3
573
Tumor
0.3
695
Tumor
0.3
367
Tumor
0.2
467
Tumor
0.2
777
Tumor
0.2
523
Tumor
0.2
395
Tumor
0.2
823
Tumor
0.2
647
Tumor
0.2
537
Tumor
0.2
851
Tumor
0.2
435
Tumor
0.2
571
Tumor
0.2
383
Tumor
0.2
685
Tumor
0.2
921
Tumor
0.2
517
Tumor
0.2
444
Normal
0.2
724
Normal
0.2
1025
Tumor
0.2
981
Tumor
0.2
297
Tumor
0.2
311
Tumor
0.2
563
Tumor
0.2
477
Tumor
0.2
187
Tumor
0.2
671
Tumor
0.2
785
Tumor
0.2
277
Tumor
0.2
975
Tumor
0.2
147
Tumor
0.1
384
Normal
0.1
925
Tumor
0.1
185
Tumor
0.1
463
Tumor
0.1
361
Tumor
0.1
376
Normal
0.1
368
Normal
0.1
451
Tumor
0.1
455
Tumor
0.1
365
Tumor
0.1
662
Normal
0.1
331
Tumor
0.1
1015
Tumor
0.1
261
Tumor
0.1
873
Tumor
0.1
857
Tumor
0.1
445
Tumor
0.1
471
Tumor
0.1
536
Normal
0.1
861
Tumor
0.1
141
Tumor
0.1
814
Normal
0.1
126
Normal
0.1
627
Tumor
0.1
513
Tumor
0.1
145
Tumor
0.1
332
Normal
0.1
222
Normal
0.1
697
Tumor
0.1
137
Tumor
0.1
413
Tumor
0.1
574
Normal
0.1
1027
Tumor
0.1
915
Tumor
0.0
1042
Normal
0.0
913
Tumor
0.0
257
Tumor
0.0
443
Tumor
0.0
917
Tumor
0.0
1043
Tumor
0.0
218
Normal
0.0
1026
Normal
0.0
114
Normal
0.0
715
Tumor
0.0
196
Normal
0.0
553
Tumor
0.0
557
Tumor
0.0
433
Tumor
0.0
366
Normal
0.0
741
Tumor
0.0
362
Normal
0.0
146
Normal
0.0
727
Tumor
0.0
312
Normal
0.0
135
Tumor
0.0
124
Normal
0.0
1028
Normal
0.0
564
Normal
0.0
392
Normal
0.0
415
Tumor
0.0
516
Normal
0.0
524
Normal
0.0
527
Tumor
0.0
514
Normal
0.0
664
Normal
0.0
858
Normal
0.0
298
Normal
0.0
1041
Tumor
0.0
434
Normal
0.0
1044
Normal
0.0
636
Normal
0.0
672
Normal
0.0
493
Tumor
0.0
353
Tumor
0.0
423
Tumor
0.0
884
Normal
0.0
188
Normal
0.0
628
Normal
0.0
223
Tumor
0.0
491
Tumor
0.0
518
Normal
0.0
713
Tumor
0.0
878
Normal
-0.1
111
Normal
-0.1
617
Tumor
-0.1
128
Normal
-0.1
1045
Tumor
-0.1
648
Normal
-0.1
615
Tumor
-0.1
966
Normal
-0.1
142
Normal
-0.1
396
Normal
-0.1
284
Normal
-0.1
863
Tumor
-0.1
538
Normal
-0.1
483
Tumor
-0.1
737
Tumor
-0.1
852
Normal
-0.1
487
Tumor
-0.1
912
Normal
-0.1
388
Normal
-0.1
446
Normal
-0.1
232
Normal
-0.1
778
Normal
-0.1
212
Normal
-0.1
387
Tumor
-0.1
481
Tumor
-0.1
554
Normal
-0.1
314
Normal
-0.1
914
Normal
-0.1
572
Normal
-0.1
568
Normal
-0.1
214
Normal
-0.1
492
Normal
-0.1
911
Tumor
-0.1
642
Normal
-0.1
746
Normal
-0.1
954
Normal
-0.1
474
Normal
-0.1
666
Normal
-0.1
721
Tumor
-0.1
268
Normal
-0.1
824
Normal
-0.1
882
Normal
-0.1
868
Normal
-0.1
148
Normal
-0.1
818
Normal
-0.1
867
Tumor
-0.1
224
Normal
-0.1
526
Normal
-0.1
327
Tumor
-0.1
874
Normal
-0.1
744
Normal
-0.1
386
Normal
-0.1
448
Normal
-0.1
421
Tumor
-0.1
426
Normal
-0.1
498
Normal
-0.1
468
Normal
-0.1
354
Normal
-0.1
924
Normal
-0.2
864
Normal
-0.2
618
Normal
-0.2
1046
Normal
-0.2
742
Normal
-0.2
228
Normal
-0.2
341
Tumor
-0.2
862
Normal
-0.2
866
Normal
-0.2
484
Normal
-0.2
482
Normal
-0.2
394
Normal
-0.2
918
Normal
-0.2
1032
Normal
-0.2
478
Normal
-0.2
534
Normal
-0.2
262
Normal
-0.2
436
Normal
-0.2
816
Normal
-0.2
738
Normal
-0.2
922
Normal
-0.2
1022
Normal
-0.2
344
Normal
-0.2
755
Tumor
-0.2
955
Tumor
-0.2
916
Normal
-0.2
635
Tumor
-0.2
616
Normal
-0.2
728
Normal
-0.2
494
Normal
-0.2
456
Normal
-0.2
428
Normal
-0.2
452
Normal
-0.2
172
Normal
-0.2
488
Normal
-0.2
412
Normal
-0.2
186
Normal
-0.2
278
Normal
-0.2
286
Normal
-0.2
926
Normal
-0.2
342
Normal
-0.2
472
Normal
-0.2
462
Normal
-0.2
558
Normal
-0.2
162
Normal
-0.2
786
Normal
-0.2
964
Normal
-0.2
723
Tumor
-0.2
696
Normal
-0.3
136
Normal
-0.3
756
Normal
-0.3
138
Normal
-0.3
698
Normal
-0.3
528
Normal
-0.3
952
Normal
-0.3
432
Normal
-0.3
745
Tumor
-0.3
272
Normal
-0.3
424
Normal
-0.3
714
Normal
-0.3
956
Normal
-0.3
546
Normal
-0.3
464
Normal
-0.3
328
Normal
-0.3
944
Normal
-0.3
358
Normal
-0.3
364
Normal
-0.3
1016
Normal
-0.3
968
Normal
-0.3
716
Normal
-0.3
722
Normal
-0.3
416
Normal
-0.3
422
Normal
-0.3
466
Normal
-0.3
352
Normal
-0.4
686
Normal
-0.4
356
Normal
-0.4
976
Normal
-0.4
132
Normal
-0.4
258
Normal
-0.4
938
Normal
-0.4
414
Normal
-0.4
982
Normal
-0.4
1014
Normal
-0.4
978
Normal
-0.4
958
Normal
-0.5
984
Normal
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
