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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC25A23 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
99.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
83.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
79.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
76.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
75.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
63.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
60.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
56.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
55.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
51.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
48.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
47.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
47.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
44.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
44.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
44.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
43.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
42.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
42.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
41.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
41.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
40.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
40.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
39.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
39.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
39.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
38.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
38.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
38.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
37.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
37.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
37.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
36.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
36.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
36.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
35.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
35.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
35.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
35.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
35.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
34.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
34.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
34.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
34.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
34.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
34.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
33.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
33.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
33.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
32.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
32.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
32.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
32.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
32.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
31.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
31.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
31.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
31.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
31.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
31.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
30.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
30.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
30.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
30.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
30.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
30.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
30.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
29.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
29.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
29.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
29.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
28.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
28.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
28.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
28.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
28.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
28.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
28.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
28.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
28.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
27.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
27.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
27.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
27.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
27.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
27.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
27.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
26.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
26.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
26.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
26.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
26.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
25.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
25.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
25.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
25.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
25.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
25.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
24.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
24.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
23.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
23.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
23.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
23.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
23.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
22.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
22.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
22.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
22.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
21.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
21.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
21.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
21.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
21.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
20.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
20.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
20.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
20.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
20.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
20.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
19.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
19.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
19.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
17.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
17.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
17.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
16.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
16.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC25A23 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.9
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
59.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
54.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
43.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
42.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
37.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
32.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
30.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
30.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
29.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
28.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
26.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
26.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
26.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
25.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
25.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
24.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
24.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
22.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
21.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.4
513
Tumor
1.1
465
Tumor
0.9
411
Tumor
0.9
641
Tumor
0.8
571
Tumor
0.8
162
Normal
0.7
487
Tumor
0.7
435
Tumor
0.7
428
Normal
0.7
557
Tumor
0.7
745
Tumor
0.7
356
Normal
0.6
468
Normal
0.6
615
Tumor
0.6
648
Normal
0.6
365
Tumor
0.6
423
Tumor
0.6
328
Normal
0.6
564
Normal
0.6
477
Tumor
0.6
227
Tumor
0.6
136
Normal
0.6
466
Normal
0.6
618
Normal
0.6
436
Normal
0.5
424
Normal
0.5
445
Tumor
0.5
636
Normal
0.5
452
Normal
0.5
456
Normal
0.5
218
Normal
0.5
553
Tumor
0.5
514
Normal
0.5
426
Normal
0.5
358
Normal
0.5
642
Normal
0.5
863
Tumor
0.5
568
Normal
0.5
393
Tumor
0.5
755
Tumor
0.5
464
Normal
0.5
446
Normal
0.5
148
Normal
0.5
823
Tumor
0.5
172
Normal
0.5
364
Normal
0.5
128
Normal
0.5
432
Normal
0.5
132
Normal
0.5
868
Normal
0.4
462
Normal
0.4
232
Normal
0.4
196
Normal
0.4
186
Normal
0.4
214
Normal
0.4
954
Normal
0.4
361
Tumor
0.4
528
Normal
0.4
534
Normal
0.4
422
Normal
0.4
727
Tumor
0.4
628
Normal
0.4
357
Tumor
0.4
572
Normal
0.4
713
Tumor
0.4
742
Normal
0.4
342
Normal
0.4
662
Normal
0.4
298
Normal
0.4
558
Normal
0.4
1014
Normal
0.4
526
Normal
0.4
672
Normal
0.4
746
Normal
0.4
824
Normal
0.4
1045
Tumor
0.4
818
Normal
0.4
414
Normal
0.4
472
Normal
0.4
482
Normal
0.4
616
Normal
0.4
138
Normal
0.4
666
Normal
0.4
664
Normal
0.4
344
Normal
0.3
984
Normal
0.3
114
Normal
0.3
716
Normal
0.3
1015
Tumor
0.3
882
Normal
0.3
412
Normal
0.3
1046
Normal
0.3
786
Normal
0.3
394
Normal
0.3
635
Tumor
0.3
723
Tumor
0.3
714
Normal
0.3
554
Normal
0.3
697
Tumor
0.3
982
Normal
0.3
222
Normal
0.3
698
Normal
0.3
518
Normal
0.3
286
Normal
0.3
912
Normal
0.3
722
Normal
0.3
878
Normal
0.3
978
Normal
0.3
376
Normal
0.3
354
Normal
0.3
127
Tumor
0.3
314
Normal
0.3
785
Tumor
0.3
484
Normal
0.3
111
Normal
0.3
427
Tumor
0.3
728
Normal
0.3
756
Normal
0.3
944
Normal
0.3
258
Normal
0.3
228
Normal
0.3
448
Normal
0.3
952
Normal
0.3
368
Normal
0.2
444
Normal
0.2
416
Normal
0.2
352
Normal
0.2
884
Normal
0.2
145
Tumor
0.2
388
Normal
0.2
366
Normal
0.2
341
Tumor
0.2
146
Normal
0.2
474
Normal
0.2
488
Normal
0.2
546
Normal
0.2
816
Normal
0.2
278
Normal
0.2
272
Normal
0.2
574
Normal
0.2
696
Normal
0.2
392
Normal
0.2
938
Normal
0.2
778
Normal
0.2
1016
Normal
0.2
1022
Normal
0.2
686
Normal
0.2
494
Normal
0.2
914
Normal
0.2
515
Tumor
0.2
1043
Tumor
0.2
312
Normal
0.2
721
Tumor
0.2
738
Normal
0.2
396
Normal
0.2
112
Tumor
0.2
126
Normal
0.2
858
Normal
0.2
1044
Normal
0.2
924
Normal
0.2
926
Normal
0.2
1031
Tumor
0.2
383
Tumor
0.2
161
Tumor
0.2
332
Normal
0.2
524
Normal
0.1
142
Normal
0.1
918
Normal
0.1
141
Tumor
0.1
1028
Normal
0.1
864
Normal
0.1
191
Tumor
0.1
221
Tumor
0.1
953
Tumor
0.1
866
Normal
0.1
777
Tumor
0.1
922
Normal
0.1
695
Tumor
0.1
217
Tumor
0.1
744
Normal
0.1
874
Normal
0.1
353
Tumor
0.1
523
Tumor
0.1
384
Normal
0.1
277
Tumor
0.1
284
Normal
0.1
1032
Normal
0.1
1042
Normal
0.1
741
Tumor
0.1
955
Tumor
0.1
212
Normal
0.1
483
Tumor
0.1
262
Normal
0.1
188
Normal
0.1
451
Tumor
0.1
964
Normal
0.1
268
Normal
0.1
956
Normal
0.1
124
Normal
0.1
224
Normal
0.1
113
Tumor
0.1
223
Tumor
0.1
857
Tumor
0.1
386
Normal
0.1
195
Tumor
0.1
976
Normal
0.1
981
Tumor
0.1
743
Tumor
0.0
737
Tumor
0.0
968
Normal
0.0
852
Normal
0.0
516
Normal
0.0
665
Tumor
0.0
192
Normal
0.0
536
Normal
0.0
433
Tumor
0.0
123
Tumor
0.0
977
Tumor
0.0
362
Normal
0.0
862
Normal
0.0
937
Tumor
0.0
923
Tumor
0.0
187
Tumor
0.0
1026
Normal
0.0
478
Normal
0.0
617
Tumor
0.0
135
Tumor
0.0
137
Tumor
0.0
147
Tumor
0.0
915
Tumor
0.0
467
Tumor
0.0
663
Tumor
0.0
271
Tumor
0.0
1025
Tumor
0.0
916
Normal
-0.1
461
Tumor
-0.1
261
Tumor
-0.1
431
Tumor
-0.1
815
Tumor
-0.1
913
Tumor
-0.1
538
Normal
-0.1
527
Tumor
-0.1
563
Tumor
-0.1
463
Tumor
-0.1
492
Normal
-0.1
171
Tumor
-0.1
257
Tumor
-0.1
573
Tumor
-0.1
498
Normal
-0.1
867
Tumor
-0.1
443
Tumor
-0.1
434
Normal
-0.1
537
Tumor
-0.1
267
Tumor
-0.1
285
Tumor
-0.1
231
Tumor
-0.1
533
Tumor
-0.1
355
Tumor
-0.1
125
Tumor
-0.2
497
Tumor
-0.2
813
Tumor
-0.2
327
Tumor
-0.2
1041
Tumor
-0.2
491
Tumor
-0.2
297
Tumor
-0.2
1013
Tumor
-0.2
958
Normal
-0.2
873
Tumor
-0.2
921
Tumor
-0.2
545
Tumor
-0.2
213
Tumor
-0.2
567
Tumor
-0.2
671
Tumor
-0.2
851
Tumor
-0.2
395
Tumor
-0.2
481
Tumor
-0.2
966
Normal
-0.2
1021
Tumor
-0.2
447
Tumor
-0.3
983
Tumor
-0.3
517
Tumor
-0.3
455
Tumor
-0.3
963
Tumor
-0.3
493
Tumor
-0.3
883
Tumor
-0.3
185
Tumor
-0.3
343
Tumor
-0.3
1027
Tumor
-0.3
911
Tumor
-0.3
525
Tumor
-0.3
421
Tumor
-0.4
814
Normal
-0.4
877
Tumor
-0.4
313
Tumor
-0.4
647
Tumor
-0.4
131
Tumor
-0.4
865
Tumor
-0.4
861
Tumor
-0.4
685
Tumor
-0.4
391
Tumor
-0.4
975
Tumor
-0.4
715
Tumor
-0.4
957
Tumor
-0.5
967
Tumor
-0.5
375
Tumor
-0.5
471
Tumor
-0.5
415
Tumor
-0.5
881
Tumor
-0.5
413
Tumor
-0.5
943
Tumor
-0.5
724
Normal
-0.5
925
Tumor
-0.6
331
Tumor
-0.6
363
Tumor
-0.6
473
Tumor
-0.6
535
Tumor
-0.6
387
Tumor
-0.6
283
Tumor
-0.6
367
Tumor
-0.7
817
Tumor
-0.7
425
Tumor
-0.7
351
Tumor
-0.7
951
Tumor
-0.7
965
Tumor
-0.8
385
Tumor
-0.8
311
Tumor
-0.8
661
Tumor
-0.9
917
Tumor
-1.0
211
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
