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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSD4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
4.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
2.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
2.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSD4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.7
Number of samples
231
Samples
Sample
Description
TPM
DO45107
0 years, female, NA, stage:2, alive, 1710 days
45.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
38.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
36.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
33.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
32.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
29.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
29.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
28.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
28.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
27.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
27.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
25.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
25.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
25.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
24.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
23.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
23.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
21.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
3.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
858
Normal
1.1
426
Normal
0.9
724
Normal
0.9
428
Normal
0.9
414
Normal
0.8
723
Tumor
0.8
126
Normal
0.8
424
Normal
0.8
738
Normal
0.7
422
Normal
0.7
423
Tumor
0.6
728
Normal
0.6
498
Normal
0.6
862
Normal
0.6
343
Tumor
0.6
224
Normal
0.6
866
Normal
0.6
128
Normal
0.6
864
Normal
0.6
452
Normal
0.6
868
Normal
0.6
111
Normal
0.6
114
Normal
0.5
286
Normal
0.5
1031
Tumor
0.5
536
Normal
0.5
434
Normal
0.5
742
Normal
0.5
756
Normal
0.5
744
Normal
0.5
444
Normal
0.5
492
Normal
0.5
211
Tumor
0.5
212
Normal
0.5
963
Tumor
0.5
131
Tumor
0.5
284
Normal
0.5
874
Normal
0.5
446
Normal
0.5
966
Normal
0.5
958
Normal
0.5
956
Normal
0.4
366
Normal
0.4
456
Normal
0.4
432
Normal
0.4
697
Tumor
0.4
472
Normal
0.4
635
Tumor
0.4
386
Normal
0.4
877
Tumor
0.4
192
Normal
0.4
964
Normal
0.4
861
Tumor
0.4
786
Normal
0.4
362
Normal
0.4
482
Normal
0.4
814
Normal
0.4
1013
Tumor
0.4
228
Normal
0.4
881
Tumor
0.4
384
Normal
0.4
478
Normal
0.4
917
Tumor
0.4
468
Normal
0.4
617
Tumor
0.4
494
Normal
0.4
146
Normal
0.4
722
Normal
0.4
415
Tumor
0.4
124
Normal
0.4
716
Normal
0.4
138
Normal
0.3
686
Normal
0.3
968
Normal
0.3
136
Normal
0.3
976
Normal
0.3
1044
Normal
0.3
546
Normal
0.3
462
Normal
0.3
413
Tumor
0.3
396
Normal
0.3
1043
Tumor
0.3
713
Tumor
0.3
554
Normal
0.3
448
Normal
0.3
464
Normal
0.3
926
Normal
0.3
497
Tumor
0.3
564
Normal
0.3
721
Tumor
0.3
535
Tumor
0.3
191
Tumor
0.3
952
Normal
0.3
376
Normal
0.3
884
Normal
0.3
737
Tumor
0.3
912
Normal
0.3
113
Tumor
0.3
778
Normal
0.2
363
Tumor
0.2
882
Normal
0.2
1021
Tumor
0.2
447
Tumor
0.2
135
Tumor
0.2
196
Normal
0.2
918
Normal
0.2
214
Normal
0.2
416
Normal
0.2
714
Normal
0.2
368
Normal
0.2
331
Tumor
0.2
421
Tumor
0.2
1032
Normal
0.2
746
Normal
0.2
364
Normal
0.2
466
Normal
0.2
218
Normal
0.2
365
Tumor
0.2
125
Tumor
0.2
563
Tumor
0.2
574
Normal
0.2
1042
Normal
0.2
528
Normal
0.2
538
Normal
0.2
573
Tumor
0.2
328
Normal
0.2
818
Normal
0.2
977
Tumor
0.2
388
Normal
0.2
222
Normal
0.2
195
Tumor
0.2
954
Normal
0.2
392
Normal
0.2
924
Normal
0.2
463
Tumor
0.2
883
Tumor
0.2
217
Tumor
0.2
474
Normal
0.2
262
Normal
0.2
481
Tumor
0.2
627
Tumor
0.2
534
Normal
0.1
982
Normal
0.1
412
Normal
0.1
461
Tumor
0.1
488
Normal
0.1
344
Normal
0.1
568
Normal
0.1
558
Normal
0.1
867
Tumor
0.1
641
Tumor
0.1
938
Normal
0.1
272
Normal
0.1
487
Tumor
0.1
1025
Tumor
0.1
268
Normal
0.1
975
Tumor
0.1
984
Normal
0.1
394
Normal
0.1
451
Tumor
0.1
878
Normal
0.1
696
Normal
0.1
375
Tumor
0.1
1022
Normal
0.1
978
Normal
0.1
516
Normal
0.1
141
Tumor
0.1
213
Tumor
0.1
142
Normal
0.1
557
Tumor
0.1
258
Normal
0.1
277
Tumor
0.1
572
Normal
0.1
332
Normal
0.1
698
Normal
0.1
132
Normal
0.1
914
Normal
0.1
944
Normal
0.1
922
Normal
0.1
311
Tumor
0.1
1046
Normal
0.1
436
Normal
0.1
514
Normal
0.1
147
Tumor
0.1
471
Tumor
0.1
1028
Normal
0.1
1045
Tumor
0.1
1026
Normal
0.1
187
Tumor
0.1
327
Tumor
0.1
567
Tumor
0.1
314
Normal
0.1
385
Tumor
0.0
526
Normal
0.0
356
Normal
0.0
925
Tumor
0.0
312
Normal
0.0
342
Normal
0.0
857
Tumor
0.0
863
Tumor
0.0
913
Tumor
0.0
352
Normal
0.0
916
Normal
0.0
1014
Normal
0.0
232
Normal
0.0
672
Normal
0.0
427
Tumor
0.0
983
Tumor
0.0
661
Tumor
0.0
491
Tumor
0.0
383
Tumor
0.0
1041
Tumor
0.0
957
Tumor
0.0
852
Normal
0.0
223
Tumor
0.0
662
Normal
0.0
824
Normal
0.0
816
Normal
0.0
145
Tumor
0.0
127
Tumor
0.0
137
Tumor
0.0
813
Tumor
0.0
524
Normal
0.0
484
Normal
0.0
465
Tumor
0.0
518
Normal
0.0
616
Normal
0.0
1027
Tumor
-0.1
642
Normal
-0.1
297
Tumor
-0.1
823
Tumor
-0.1
955
Tumor
-0.1
915
Tumor
-0.1
455
Tumor
-0.1
785
Tumor
-0.1
161
Tumor
-0.1
433
Tumor
-0.1
267
Tumor
-0.1
571
Tumor
-0.1
981
Tumor
-0.1
493
Tumor
-0.1
354
Normal
-0.1
271
Tumor
-0.1
445
Tumor
-0.1
278
Normal
-0.1
313
Tumor
-0.1
628
Normal
-0.1
923
Tumor
-0.1
473
Tumor
-0.1
391
Tumor
-0.1
367
Tumor
-0.1
361
Tumor
-0.1
921
Tumor
-0.1
664
Normal
-0.1
636
Normal
-0.1
1016
Normal
-0.1
298
Normal
-0.1
185
Tumor
-0.1
283
Tumor
-0.1
483
Tumor
-0.2
188
Normal
-0.2
431
Tumor
-0.2
553
Tumor
-0.2
755
Tumor
-0.2
112
Tumor
-0.2
618
Normal
-0.2
953
Tumor
-0.2
227
Tumor
-0.2
777
Tumor
-0.2
943
Tumor
-0.2
967
Tumor
-0.2
467
Tumor
-0.2
1015
Tumor
-0.2
615
Tumor
-0.2
937
Tumor
-0.2
395
Tumor
-0.2
358
Normal
-0.2
965
Tumor
-0.2
341
Tumor
-0.2
873
Tumor
-0.3
443
Tumor
-0.3
477
Tumor
-0.3
666
Normal
-0.3
527
Tumor
-0.3
186
Normal
-0.3
162
Normal
-0.3
353
Tumor
-0.3
517
Tumor
-0.3
148
Normal
-0.3
545
Tumor
-0.3
357
Tumor
-0.3
911
Tumor
-0.3
172
Normal
-0.3
951
Tumor
-0.3
171
Tumor
-0.3
745
Tumor
-0.3
387
Tumor
-0.3
221
Tumor
-0.3
513
Tumor
-0.4
515
Tumor
-0.4
355
Tumor
-0.4
648
Normal
-0.4
865
Tumor
-0.4
411
Tumor
-0.4
123
Tumor
-0.4
851
Tumor
-0.4
741
Tumor
-0.4
671
Tumor
-0.4
523
Tumor
-0.4
727
Tumor
-0.5
685
Tumor
-0.5
817
Tumor
-0.5
435
Tumor
-0.5
533
Tumor
-0.5
425
Tumor
-0.5
393
Tumor
-0.6
715
Tumor
-0.6
231
Tumor
-0.6
695
Tumor
-0.6
261
Tumor
-0.6
525
Tumor
-0.6
285
Tumor
-0.6
537
Tumor
-0.7
257
Tumor
-0.7
351
Tumor
-0.7
815
Tumor
-0.7
663
Tumor
-0.9
665
Tumor
-1.0
647
Tumor
-1.0
743
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
