MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:96.2 nTPM
HPA Brain:109.0 nTPM
GTEx:96.2 nTPM
FANTOM5:14.1 Scaled Tags Per Million
Pig:21.6 nTPM
Mouse:22.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 109.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.8
2586 Male, age 75, left hemisphere 164.2
2666 Male, age 74, left hemisphere 129.6
2828 Female, age 72, unknown 115.3
1827 Male, age 72, unknown 112.5
2019 Male, age 18, unknown 96.1
2219 Male, age 76, both hemispheres 91.5
2411 Female, age 72, unknown 91.5
1833 Male, age 53, unknown 89.2
1830 Male, age 51, unknown 84.9
1870 Female, age 42, unknown 83.4
Dorsal raphe nucleus
nTPM: 93.7
1828 Male, age 53, unknown 107.9
2047 Male, age 72, unknown 106.6
2750 Male, age 76, both hemispheres 90.5
2298 Female, age 72, unknown 88.9
2016 Female, age 72, unknown 74.5
Inferior colliculus
nTPM: 92.8
2097 Female, age 72, unknown 95.3
1890 Male, age 53, unknown 95.0
2849 Male, age 72, unknown 93.3
1848 Female, age 42, unknown 87.7
Median raphe nucleus
nTPM: 99.3
2220 Male, age 76, midline 99.3
Periaquaductal grey, anterior
nTPM: 108.0
1795 Male, age 51, unknown 109.7
1947 Male, age 18, unknown 109.5
2502 Female, age 75, unknown 105.0
Periaquaductal grey, dorsal
nTPM: 80.3
1840 Male, age 53, unknown 86.2
2464 Female, age 72, unknown 82.1
2850 Male, age 76, both hemispheres 77.5
1831 Male, age 72, unknown 75.5
Periaquaductal grey, lateral
nTPM: 75.3
2140 Male, age 76, both hemispheres 77.9
2053 Male, age 18, unknown 76.1
2272 Male, age 74, both hemispheres 71.8
Pretectal area
nTPM: 97.0
1816 Male, age 51, unknown 131.4
2007 Male, age 72, unknown 123.1
1817 Female, age 42, unknown 118.0
1944 Female, age 72, unknown 115.8
1815 Male, age 53, unknown 105.7
2407 Male, age 75, both hemispheres 95.7
2825 Male, age 18, unknown 87.5
2667 Female, age 75, unknown 85.5
2316 Male, age 76, right hemisphere 73.4
2224 Female, age 72, unknown 69.2
2273 Male, age 74, both hemispheres 61.5
Red nucleus
nTPM: 93.7
2584 Male, age 75, left hemisphere 133.7
2588 Male, age 74, left hemisphere 114.6
2785 Male, age 18, unknown 102.9
2769 Male, age 72, unknown 96.9
2227 Male, age 72, unknown 93.3
2503 Female, age 72, unknown 89.3
1954 Female, age 42, unknown 86.3
1865 Male, age 51, unknown 85.5
2725 Female, age 75, unknown 85.5
1821 Female, age 72, unknown 80.1
1904 Male, age 53, unknown 80.1
2823 Male, age 76, right hemisphere 76.0
Substantia nigra
nTPM: 109.0
2665 Male, age 74, both hemispheres 158.2
1916 Female, age 42, unknown 139.6
1851 Male, age 51, unknown 112.5
2583 Male, age 75, right hemisphere 109.6
1941 Male, age 53, unknown 109.5
1889 Female, age 72, unknown 107.3
2699 Male, age 18, unknown 99.3
2590 Female, age 75, unknown 91.2
2241 Male, age 72, unknown 83.2
2409 Female, age 72, unknown 79.3
Superior colliculus
nTPM: 99.6
2668 Female, age 75, unknown 140.0
2664 Male, age 75, both hemispheres 128.2
2087 Female, age 72, unknown 112.1
2261 Male, age 18, unknown 106.8
1796 Male, age 53, unknown 104.1
1839 Male, age 51, unknown 84.5
2587 Male, age 74, left hemisphere 82.3
1895 Male, age 76, right hemisphere 81.4
1913 Female, age 42, unknown 80.4
1995 Male, age 72, unknown 76.6
Ventral tegmental area
nTPM: 94.1
2410 Female, age 72, unknown 108.0
2218 Male, age 76, both hemispheres 104.1
1915 Female, age 42, unknown 99.9
1942 Male, age 51, unknown 95.3
2021 Male, age 53, unknown 79.7
2223 Female, age 72, unknown 77.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 96.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 96.2
Samples: 139

Max nTPM: 173.2
Min nTPM: 50.5
Std nTPM: 25.0
Median nTPM: 95.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 173.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 152.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 152.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 145.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 142.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 141.6
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 139.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 137.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 136.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 134.4
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 133.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 14.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.1
FF:10158-103A5 76 years, female 14.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 21.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.9
Samples: 4

Max nTPM: 20.9
Min nTPM: 13.1
Sample A Female 20.7
Sample B Female 20.9
Sample C Male 20.7
Sample D Male 13.1
Midbrain
nTPM: 19.4
Samples: 4

Max nTPM: 25.0
Min nTPM: 14.5
Sample A Female 14.5
Sample B Female 16.3
Sample C Male 25.0
Sample D Male 21.8
Periaqueductal gray
nTPM: 16.3
Samples: 3

Max nTPM: 18.3
Min nTPM: 14.4
Sample B Female 16.1
Sample C Male 18.3
Sample D Male 14.4
Superior colliculi
nTPM: 21.6
Samples: 4

Max nTPM: 22.9
Min nTPM: 20.9
Sample A Female 21.3
Sample B Female 22.9
Sample C Male 21.4
Sample D Male 20.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.1
Samples: 4

Max nTPM: 23.8
Min nTPM: 20.3
Sample A Male 23.8
Sample B Male 21.5
Sample C Female 20.3
Sample D Female 22.7

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