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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MSTO1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
57.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
51.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
40.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
40.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
40.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
40.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
39.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
39.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
37.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
36.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
34.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
34.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
33.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
33.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
32.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
32.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
32.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
32.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
31.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
31.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
30.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
30.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
29.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
28.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
28.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
27.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
27.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
27.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
26.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
26.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
26.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
25.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
24.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
24.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
24.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
24.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
24.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
23.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
23.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
21.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
19.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
17.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MSTO1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.3
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
3.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
2.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
2.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
2.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
2.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
431
Tumor
1.7
865
Tumor
1.6
525
Tumor
1.5
1021
Tumor
1.5
427
Tumor
1.4
777
Tumor
1.4
383
Tumor
1.3
957
Tumor
1.3
745
Tumor
1.2
147
Tumor
1.2
231
Tumor
1.1
533
Tumor
1.1
491
Tumor
1.0
567
Tumor
1.0
965
Tumor
0.9
435
Tumor
0.9
221
Tumor
0.9
635
Tumor
0.9
523
Tumor
0.9
357
Tumor
0.9
1013
Tumor
0.9
213
Tumor
0.9
951
Tumor
0.9
911
Tumor
0.8
953
Tumor
0.8
1027
Tumor
0.8
697
Tumor
0.7
393
Tumor
0.7
211
Tumor
0.7
123
Tumor
0.7
411
Tumor
0.7
685
Tumor
0.7
191
Tumor
0.7
615
Tumor
0.7
647
Tumor
0.7
663
Tumor
0.7
387
Tumor
0.7
743
Tumor
0.7
445
Tumor
0.7
573
Tumor
0.7
527
Tumor
0.6
171
Tumor
0.6
977
Tumor
0.6
873
Tumor
0.6
975
Tumor
0.6
724
Normal
0.6
161
Tumor
0.6
1043
Tumor
0.6
557
Tumor
0.6
327
Tumor
0.6
227
Tumor
0.6
313
Tumor
0.6
553
Tumor
0.6
471
Tumor
0.6
277
Tumor
0.5
861
Tumor
0.5
483
Tumor
0.5
881
Tumor
0.5
665
Tumor
0.5
741
Tumor
0.5
1031
Tumor
0.5
285
Tumor
0.5
921
Tumor
0.5
271
Tumor
0.5
863
Tumor
0.5
915
Tumor
0.5
537
Tumor
0.5
283
Tumor
0.4
1025
Tumor
0.4
515
Tumor
0.4
497
Tumor
0.4
857
Tumor
0.4
257
Tumor
0.4
351
Tumor
0.4
661
Tumor
0.4
355
Tumor
0.4
867
Tumor
0.4
267
Tumor
0.3
473
Tumor
0.3
131
Tumor
0.3
817
Tumor
0.3
127
Tumor
0.3
923
Tumor
0.3
641
Tumor
0.3
571
Tumor
0.3
545
Tumor
0.3
493
Tumor
0.3
353
Tumor
0.3
187
Tumor
0.3
517
Tumor
0.3
983
Tumor
0.3
463
Tumor
0.2
443
Tumor
0.2
823
Tumor
0.2
477
Tumor
0.2
1041
Tumor
0.2
487
Tumor
0.2
425
Tumor
0.2
185
Tumor
0.2
385
Tumor
0.2
737
Tumor
0.2
813
Tumor
0.2
375
Tumor
0.1
627
Tumor
0.1
721
Tumor
0.1
341
Tumor
0.1
513
Tumor
0.1
137
Tumor
0.1
963
Tumor
0.1
1045
Tumor
0.1
433
Tumor
0.1
217
Tumor
0.0
877
Tumor
0.0
413
Tumor
0.0
461
Tumor
0.0
365
Tumor
0.0
331
Tumor
0.0
361
Tumor
0.0
297
Tumor
0.0
447
Tumor
0.0
481
Tumor
0.0
195
Tumor
0.0
755
Tumor
-0.1
727
Tumor
-0.1
141
Tumor
-0.1
814
Normal
-0.1
125
Tumor
-0.1
223
Tumor
-0.1
981
Tumor
-0.1
391
Tumor
-0.1
563
Tumor
-0.1
913
Tumor
-0.1
785
Tumor
-0.1
455
Tumor
-0.1
851
Tumor
-0.1
713
Tumor
-0.1
135
Tumor
-0.1
415
Tumor
-0.1
883
Tumor
-0.2
395
Tumor
-0.2
617
Tumor
-0.2
145
Tumor
-0.2
261
Tumor
-0.3
715
Tumor
-0.3
423
Tumor
-0.3
311
Tumor
-0.3
367
Tumor
-0.3
148
Normal
-0.4
172
Normal
-0.4
368
Normal
-0.4
451
Tumor
-0.4
467
Tumor
-0.4
925
Tumor
-0.4
162
Normal
-0.4
642
Normal
-0.4
188
Normal
-0.4
526
Normal
-0.4
1015
Tumor
-0.4
671
Tumor
-0.4
421
Tumor
-0.4
534
Normal
-0.4
434
Normal
-0.4
518
Normal
-0.5
695
Tumor
-0.5
492
Normal
-0.5
1042
Normal
-0.5
858
Normal
-0.5
186
Normal
-0.5
343
Tumor
-0.5
815
Tumor
-0.5
444
Normal
-0.5
218
Normal
-0.5
498
Normal
-0.5
546
Normal
-0.5
446
Normal
-0.5
978
Normal
-0.5
432
Normal
-0.5
943
Tumor
-0.5
666
Normal
-0.6
967
Tumor
-0.6
868
Normal
-0.6
384
Normal
-0.6
436
Normal
-0.6
196
Normal
-0.6
222
Normal
-0.6
1026
Normal
-0.6
214
Normal
-0.6
478
Normal
-0.6
982
Normal
-0.6
664
Normal
-0.6
328
Normal
-0.6
756
Normal
-0.6
535
Tumor
-0.6
312
Normal
-0.6
113
Tumor
-0.6
937
Tumor
-0.6
488
Normal
-0.6
1016
Normal
-0.6
1014
Normal
-0.6
864
Normal
-0.6
394
Normal
-0.6
386
Normal
-0.6
456
Normal
-0.6
388
Normal
-0.6
728
Normal
-0.6
494
Normal
-0.7
416
Normal
-0.7
852
Normal
-0.7
714
Normal
-0.7
212
Normal
-0.7
392
Normal
-0.7
366
Normal
-0.7
574
Normal
-0.7
1028
Normal
-0.7
616
Normal
-0.7
955
Tumor
-0.7
192
Normal
-0.7
866
Normal
-0.7
952
Normal
-0.7
554
Normal
-0.7
636
Normal
-0.7
564
Normal
-0.7
363
Tumor
-0.7
918
Normal
-0.7
484
Normal
-0.7
528
Normal
-0.7
662
Normal
-0.7
862
Normal
-0.7
224
Normal
-0.7
314
Normal
-0.7
268
Normal
-0.7
364
Normal
-0.7
536
Normal
-0.7
376
Normal
-0.7
568
Normal
-0.7
516
Normal
-0.7
984
Normal
-0.8
524
Normal
-0.8
778
Normal
-0.8
482
Normal
-0.8
818
Normal
-0.8
956
Normal
-0.8
228
Normal
-0.8
874
Normal
-0.8
474
Normal
-0.8
916
Normal
-0.8
628
Normal
-0.8
558
Normal
-0.8
514
Normal
-0.8
128
Normal
-0.8
648
Normal
-0.8
126
Normal
-0.8
722
Normal
-0.8
412
Normal
-0.8
114
Normal
-0.8
468
Normal
-0.8
396
Normal
-0.8
362
Normal
-0.8
917
Tumor
-0.8
824
Normal
-0.8
538
Normal
-0.8
944
Normal
-0.8
1032
Normal
-0.8
464
Normal
-0.8
426
Normal
-0.8
298
Normal
-0.8
258
Normal
-0.8
462
Normal
-0.8
262
Normal
-0.8
286
Normal
-0.8
964
Normal
-0.8
696
Normal
-0.9
124
Normal
-0.9
924
Normal
-0.9
618
Normal
-0.9
572
Normal
-0.9
472
Normal
-0.9
698
Normal
-0.9
232
Normal
-0.9
672
Normal
-0.9
1022
Normal
-0.9
284
Normal
-0.9
816
Normal
-0.9
738
Normal
-0.9
354
Normal
-0.9
424
Normal
-0.9
278
Normal
-0.9
746
Normal
-1.0
138
Normal
-1.0
352
Normal
-1.0
1044
Normal
-1.0
786
Normal
-1.0
111
Normal
-1.0
358
Normal
-1.0
466
Normal
-1.0
686
Normal
-1.0
723
Tumor
-1.0
1046
Normal
-1.0
356
Normal
-1.0
132
Normal
-1.0
142
Normal
-1.0
744
Normal
-1.0
332
Normal
-1.0
112
Tumor
-1.0
422
Normal
-1.0
344
Normal
-1.0
922
Normal
-1.1
958
Normal
-1.1
716
Normal
-1.1
342
Normal
-1.1
914
Normal
-1.1
448
Normal
-1.1
428
Normal
-1.1
146
Normal
-1.1
884
Normal
-1.1
272
Normal
-1.1
742
Normal
-1.1
954
Normal
-1.1
452
Normal
-1.2
912
Normal
-1.2
976
Normal
-1.2
968
Normal
-1.2
136
Normal
-1.2
938
Normal
-1.2
966
Normal
-1.2
465
Tumor
-1.3
882
Normal
-1.3
414
Normal
-1.3
926
Normal
-1.4
878
Normal
-1.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
