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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UPF3B is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
37.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
27.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UPF3B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.7
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.1
727
Tumor
1.1
497
Tumor
0.9
171
Tumor
0.9
737
Tumor
0.9
537
Tumor
0.9
567
Tumor
0.8
283
Tumor
0.8
863
Tumor
0.8
1013
Tumor
0.8
951
Tumor
0.8
131
Tumor
0.7
425
Tumor
0.7
487
Tumor
0.7
533
Tumor
0.7
483
Tumor
0.7
123
Tumor
0.7
313
Tumor
0.7
663
Tumor
0.7
527
Tumor
0.6
1021
Tumor
0.6
1027
Tumor
0.5
777
Tumor
0.5
471
Tumor
0.5
943
Tumor
0.5
724
Normal
0.5
277
Tumor
0.5
211
Tumor
0.5
983
Tumor
0.5
125
Tumor
0.5
957
Tumor
0.5
647
Tumor
0.5
545
Tumor
0.4
883
Tumor
0.4
523
Tumor
0.4
473
Tumor
0.4
953
Tumor
0.4
331
Tumor
0.4
977
Tumor
0.4
1015
Tumor
0.4
411
Tumor
0.4
571
Tumor
0.4
261
Tumor
0.4
463
Tumor
0.4
343
Tumor
0.4
921
Tumor
0.4
785
Tumor
0.4
913
Tumor
0.4
661
Tumor
0.4
137
Tumor
0.3
515
Tumor
0.3
857
Tumor
0.3
1031
Tumor
0.3
743
Tumor
0.3
627
Tumor
0.3
865
Tumor
0.3
484
Normal
0.3
383
Tumor
0.3
423
Tumor
0.3
493
Tumor
0.3
161
Tumor
0.3
823
Tumor
0.3
695
Tumor
0.3
873
Tumor
0.3
481
Tumor
0.3
355
Tumor
0.3
535
Tumor
0.2
421
Tumor
0.2
955
Tumor
0.2
557
Tumor
0.2
375
Tumor
0.2
257
Tumor
0.2
341
Tumor
0.2
721
Tumor
0.2
697
Tumor
0.2
925
Tumor
0.2
923
Tumor
0.2
881
Tumor
0.2
443
Tumor
0.2
615
Tumor
0.2
915
Tumor
0.2
367
Tumor
0.2
271
Tumor
0.2
861
Tumor
0.2
431
Tumor
0.2
147
Tumor
0.2
297
Tumor
0.2
1014
Normal
0.2
851
Tumor
0.2
427
Tumor
0.2
685
Tumor
0.2
1025
Tumor
0.2
112
Tumor
0.2
975
Tumor
0.2
513
Tumor
0.1
461
Tumor
0.1
426
Normal
0.1
387
Tumor
0.1
981
Tumor
0.1
617
Tumor
0.1
937
Tumor
0.1
1043
Tumor
0.1
455
Tumor
0.1
665
Tumor
0.1
285
Tumor
0.1
817
Tumor
0.1
978
Normal
0.1
424
Normal
0.1
492
Normal
0.1
918
Normal
0.1
385
Tumor
0.1
488
Normal
0.1
351
Tumor
0.1
964
Normal
0.1
525
Tumor
0.1
963
Tumor
0.1
984
Normal
0.1
415
Tumor
0.1
867
Tumor
0.1
311
Tumor
0.1
393
Tumor
0.1
967
Tumor
0.1
966
Normal
0.1
357
Tumor
0.1
958
Normal
0.1
524
Normal
0.1
474
Normal
0.1
968
Normal
0.1
944
Normal
0.1
526
Normal
0.1
498
Normal
0.1
494
Normal
0.1
327
Tumor
0.1
554
Normal
0.1
445
Tumor
0.1
447
Tumor
0.1
813
Tumor
0.1
741
Tumor
0.1
952
Normal
0.0
922
Normal
0.0
926
Normal
0.0
514
Normal
0.0
518
Normal
0.0
728
Normal
0.0
814
Normal
0.0
141
Tumor
0.0
912
Normal
0.0
536
Normal
0.0
938
Normal
0.0
258
Normal
0.0
698
Normal
0.0
356
Normal
0.0
472
Normal
0.0
477
Tumor
0.0
553
Tumor
0.0
412
Normal
0.0
1016
Normal
0.0
714
Normal
0.0
422
Normal
0.0
433
Tumor
0.0
212
Normal
0.0
413
Tumor
0.0
451
Tumor
0.0
414
Normal
0.0
365
Tumor
0.0
1046
Normal
0.0
756
Normal
0.0
436
Normal
0.0
435
Tumor
0.0
268
Normal
0.0
786
Normal
0.0
914
Normal
0.0
516
Normal
0.0
364
Normal
0.0
868
Normal
0.0
312
Normal
0.0
456
Normal
0.0
982
Normal
0.0
217
Tumor
0.0
746
Normal
0.0
858
Normal
0.0
354
Normal
0.0
1028
Normal
0.0
742
Normal
0.0
546
Normal
0.0
395
Tumor
0.0
462
Normal
0.0
924
Normal
0.0
534
Normal
-0.1
1045
Tumor
-0.1
528
Normal
-0.1
392
Normal
-0.1
221
Tumor
-0.1
628
Normal
-0.1
745
Tumor
-0.1
1044
Normal
-0.1
696
Normal
-0.1
352
Normal
-0.1
328
Normal
-0.1
428
Normal
-0.1
482
Normal
-0.1
723
Tumor
-0.1
1026
Normal
-0.1
574
Normal
-0.1
231
Tumor
-0.1
142
Normal
-0.1
298
Normal
-0.1
778
Normal
-0.1
916
Normal
-0.1
353
Tumor
-0.1
1032
Normal
-0.1
368
Normal
-0.1
278
Normal
-0.1
671
Tumor
-0.1
376
Normal
-0.1
648
Normal
-0.1
362
Normal
-0.1
416
Normal
-0.1
824
Normal
-0.1
641
Tumor
-0.1
878
Normal
-0.1
558
Normal
-0.1
563
Tumor
-0.1
911
Tumor
-0.1
448
Normal
-0.1
884
Normal
-0.1
976
Normal
-0.1
444
Normal
-0.1
572
Normal
-0.1
517
Tumor
-0.1
195
Tumor
-0.1
467
Tumor
-0.1
1022
Normal
-0.1
284
Normal
-0.1
342
Normal
-0.1
564
Normal
-0.1
686
Normal
-0.1
1041
Tumor
-0.1
228
Normal
-0.1
954
Normal
-0.1
738
Normal
-0.1
538
Normal
-0.1
882
Normal
-0.1
391
Tumor
-0.1
818
Normal
-0.1
616
Normal
-0.1
466
Normal
-0.1
862
Normal
-0.1
866
Normal
-0.2
224
Normal
-0.2
716
Normal
-0.2
852
Normal
-0.2
124
Normal
-0.2
232
Normal
-0.2
267
Tumor
-0.2
286
Normal
-0.2
864
Normal
-0.2
187
Tumor
-0.2
478
Normal
-0.2
384
Normal
-0.2
213
Tumor
-0.2
664
Normal
-0.2
672
Normal
-0.2
366
Normal
-0.2
636
Normal
-0.2
272
Normal
-0.2
956
Normal
-0.2
464
Normal
-0.2
662
Normal
-0.2
815
Tumor
-0.2
114
Normal
-0.2
138
Normal
-0.2
874
Normal
-0.2
446
Normal
-0.2
145
Tumor
-0.2
568
Normal
-0.2
136
Normal
-0.2
358
Normal
-0.2
744
Normal
-0.2
722
Normal
-0.2
262
Normal
-0.2
666
Normal
-0.2
388
Normal
-0.2
314
Normal
-0.2
715
Tumor
-0.2
573
Tumor
-0.2
344
Normal
-0.2
713
Tumor
-0.2
332
Normal
-0.2
1042
Normal
-0.2
432
Normal
-0.2
917
Tumor
-0.2
361
Tumor
-0.2
146
Normal
-0.2
227
Tumor
-0.2
162
Normal
-0.2
491
Tumor
-0.2
635
Tumor
-0.2
618
Normal
-0.2
642
Normal
-0.3
468
Normal
-0.3
185
Tumor
-0.3
816
Normal
-0.3
394
Normal
-0.3
127
Tumor
-0.3
186
Normal
-0.3
465
Tumor
-0.3
363
Tumor
-0.3
434
Normal
-0.3
223
Tumor
-0.3
386
Normal
-0.3
222
Normal
-0.3
126
Normal
-0.3
132
Normal
-0.3
396
Normal
-0.3
452
Normal
-0.3
191
Tumor
-0.3
111
Normal
-0.3
148
Normal
-0.3
188
Normal
-0.3
172
Normal
-0.3
755
Tumor
-0.3
218
Normal
-0.3
113
Tumor
-0.4
214
Normal
-0.4
128
Normal
-0.4
196
Normal
-0.4
192
Normal
-0.4
877
Tumor
-0.5
135
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
