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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TM9SF2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
62.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
379.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
220.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
206.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
163.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
162.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
161.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
160.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
158.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
156.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
145.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
143.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
137.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
133.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
132.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
132.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
132.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
128.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
125.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
123.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
121.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
116.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
114.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
114.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
113.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
113.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
112.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
110.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
110.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
109.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
109.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
108.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
107.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
107.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
105.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
104.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
103.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
100.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
100.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
99.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
99.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
96.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
95.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
94.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
94.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
93.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
93.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
93.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
93.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
93.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
92.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
92.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
92.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
92.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
91.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
91.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
90.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
89.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
89.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
89.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
89.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
89.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
86.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
86.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
86.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
86.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
85.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
85.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
84.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
84.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
84.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
83.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
83.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
82.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
82.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
82.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
82.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
81.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
80.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
80.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
80.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
80.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
79.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
79.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
78.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
78.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
78.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
77.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
77.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
77.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
77.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
76.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
76.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
76.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
76.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
76.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
76.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
75.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
75.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
75.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
74.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
74.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
73.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
73.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
73.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
72.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
72.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
71.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
71.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
71.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
70.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
70.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
70.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
69.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
69.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
69.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
69.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
69.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
69.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
69.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
69.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
69.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
68.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
67.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
67.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
67.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
67.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
67.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
67.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
66.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
66.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
66.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
66.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
66.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
66.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
65.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
65.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
65.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
65.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
65.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
65.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
65.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
64.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
64.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
64.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
64.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
63.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
63.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
63.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
63.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
62.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
62.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
62.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
62.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
62.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
61.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
61.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
61.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
61.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
61.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
60.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
60.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
60.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
60.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
59.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
59.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
59.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
59.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
59.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
59.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
59.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
58.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
58.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
58.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
58.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
58.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
58.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
57.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
57.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
57.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
56.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
56.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
56.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
56.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
56.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
56.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
56.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
55.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
55.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
55.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
55.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
55.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
55.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
55.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
55.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
54.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
54.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
54.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
54.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
54.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
54.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
54.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
54.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
54.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
52.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
52.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
52.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
52.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
51.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
51.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
51.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
51.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
51.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
50.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
50.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
50.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
50.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
49.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
48.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
48.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
48.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
47.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
47.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
47.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
47.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
47.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
46.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
46.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
46.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
46.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
46.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
46.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
45.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
45.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
45.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
45.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
45.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
45.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
45.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
45.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
45.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
44.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
44.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
44.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
43.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
43.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
42.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
42.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
42.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
42.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
42.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
42.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
42.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
41.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
41.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
41.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
41.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
41.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
40.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
40.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
40.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
40.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
40.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
40.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
40.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
39.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
39.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
39.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
39.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
39.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
38.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
38.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
38.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
38.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
37.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
37.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
37.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
37.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
37.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
37.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
37.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
36.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
36.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
36.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
36.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
36.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
35.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
35.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
35.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
34.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
34.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
34.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
34.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
34.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
34.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
33.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
33.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
33.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
33.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
33.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
33.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
32.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
32.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
32.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
32.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
32.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
32.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
32.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
31.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
31.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
31.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
31.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
30.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
30.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
30.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
30.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
30.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
29.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
29.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
29.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
29.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
28.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
28.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
27.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
27.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
27.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
27.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
27.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
25.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
24.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
24.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
23.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
23.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
23.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
22.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
22.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
22.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
22.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
21.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
21.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
18.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
18.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
16.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
15.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TM9SF2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
81.8
Number of samples
231
Samples
Sample
Description
TPM
DO45263
0 years, male, NA, stage:3, dead, 270 days
557.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
443.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
271.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
214.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
201.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
197.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
197.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
195.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
177.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
170.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
163.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
159.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
158.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
157.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
153.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
144.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
143.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
143.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
143.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
141.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
141.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
141.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
136.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
134.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
131.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
129.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
126.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
123.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
122.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
121.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
118.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
117.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
116.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
116.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
116.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
114.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
113.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
113.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
112.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
112.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
111.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
111.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
110.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
110.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
110.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
109.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
109.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
108.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
108.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
107.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
107.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
106.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
105.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
105.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
104.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
104.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
103.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
102.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
102.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
100.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
100.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
99.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
99.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
97.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
96.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
96.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
95.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
94.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
94.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
94.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
93.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
92.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
91.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
90.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
89.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
89.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
88.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
88.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
87.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
87.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
87.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
87.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
87.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
87.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
86.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
85.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
84.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
83.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
83.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
82.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
82.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
82.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
81.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
79.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
79.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
79.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
79.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
79.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
79.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
78.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
77.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
77.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
76.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
76.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
76.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
76.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
76.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
75.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
75.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
75.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
75.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
75.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
75.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
74.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
72.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
72.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
71.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
71.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
71.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
71.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
70.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
70.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
69.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
69.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
69.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
67.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
67.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
67.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
66.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
66.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
66.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
65.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
65.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
65.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
65.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
64.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
64.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
64.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
64.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
63.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
63.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
63.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
63.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
61.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
61.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
61.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
61.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
61.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
60.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
60.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
60.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
59.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
59.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
59.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
58.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
57.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
56.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
56.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
56.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
55.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
54.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
54.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
54.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
53.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
53.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
53.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
52.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
52.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
51.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
51.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
50.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
50.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
48.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
47.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
46.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
46.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
45.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
45.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
45.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
45.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
44.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
44.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
44.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
44.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
43.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
43.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
41.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
40.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
40.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
40.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
39.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
39.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
38.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
38.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
38.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
37.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
37.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
36.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
35.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
35.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
34.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
34.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
34.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
33.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
33.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
32.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
32.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
31.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
31.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
31.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
31.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
28.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
28.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
27.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
27.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
25.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
25.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
24.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
24.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
24.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
135
Tumor
1.7
1027
Tumor
1.1
697
Tumor
1.0
557
Tumor
0.9
743
Tumor
0.9
271
Tumor
0.8
817
Tumor
0.8
411
Tumor
0.8
395
Tumor
0.8
877
Tumor
0.7
277
Tumor
0.7
713
Tumor
0.7
123
Tumor
0.7
641
Tumor
0.7
1021
Tumor
0.6
983
Tumor
0.6
487
Tumor
0.5
571
Tumor
0.5
663
Tumor
0.5
257
Tumor
0.5
865
Tumor
0.5
331
Tumor
0.5
491
Tumor
0.5
567
Tumor
0.5
523
Tumor
0.5
267
Tumor
0.4
427
Tumor
0.4
445
Tumor
0.4
553
Tumor
0.4
635
Tumor
0.4
125
Tumor
0.4
963
Tumor
0.4
965
Tumor
0.4
141
Tumor
0.4
223
Tumor
0.4
665
Tumor
0.4
497
Tumor
0.4
911
Tumor
0.3
443
Tumor
0.3
385
Tumor
0.3
921
Tumor
0.3
113
Tumor
0.3
937
Tumor
0.3
851
Tumor
0.3
951
Tumor
0.3
1015
Tumor
0.3
615
Tumor
0.3
617
Tumor
0.3
195
Tumor
0.3
351
Tumor
0.3
545
Tumor
0.3
685
Tumor
0.3
285
Tumor
0.3
883
Tumor
0.3
813
Tumor
0.3
823
Tumor
0.3
1043
Tumor
0.3
473
Tumor
0.3
1041
Tumor
0.3
221
Tumor
0.3
393
Tumor
0.3
493
Tumor
0.3
327
Tumor
0.3
975
Tumor
0.3
737
Tumor
0.3
467
Tumor
0.2
147
Tumor
0.2
917
Tumor
0.2
231
Tumor
0.2
647
Tumor
0.2
671
Tumor
0.2
435
Tumor
0.2
777
Tumor
0.2
451
Tumor
0.2
363
Tumor
0.2
755
Tumor
0.2
724
Normal
0.2
375
Tumor
0.2
745
Tumor
0.2
145
Tumor
0.2
161
Tumor
0.2
1025
Tumor
0.2
461
Tumor
0.2
261
Tumor
0.2
967
Tumor
0.2
227
Tumor
0.2
727
Tumor
0.2
367
Tumor
0.2
383
Tumor
0.2
913
Tumor
0.2
471
Tumor
0.2
863
Tumor
0.1
187
Tumor
0.1
423
Tumor
0.1
1013
Tumor
0.1
953
Tumor
0.1
355
Tumor
0.1
695
Tumor
0.1
433
Tumor
0.1
537
Tumor
0.1
515
Tumor
0.1
455
Tumor
0.1
311
Tumor
0.1
131
Tumor
0.1
715
Tumor
0.1
481
Tumor
0.1
535
Tumor
0.1
721
Tumor
0.1
1031
Tumor
0.1
661
Tumor
0.1
573
Tumor
0.1
313
Tumor
0.1
191
Tumor
0.1
297
Tumor
0.1
353
Tumor
0.1
185
Tumor
0.1
463
Tumor
0.1
171
Tumor
0.1
881
Tumor
0.0
741
Tumor
0.0
211
Tumor
0.0
815
Tumor
0.0
341
Tumor
0.0
112
Tumor
0.0
517
Tumor
0.0
925
Tumor
0.0
627
Tumor
0.0
332
Normal
0.0
127
Tumor
0.0
955
Tumor
0.0
785
Tumor
0.0
914
Normal
0.0
357
Tumor
0.0
861
Tumor
0.0
525
Tumor
0.0
137
Tumor
0.0
218
Normal
0.0
387
Tumor
0.0
447
Tumor
0.0
452
Normal
-0.1
533
Tumor
-0.1
981
Tumor
-0.1
636
Normal
-0.1
746
Normal
-0.1
114
Normal
-0.1
527
Tumor
-0.1
642
Normal
-0.1
873
Tumor
-0.1
477
Tumor
-0.1
124
Normal
-0.1
526
Normal
-0.1
483
Tumor
-0.1
217
Tumor
-0.1
421
Tumor
-0.1
343
Tumor
-0.1
662
Normal
-0.1
666
Normal
-0.1
434
Normal
-0.1
814
Normal
-0.1
857
Tumor
-0.1
1028
Normal
-0.1
664
Normal
-0.1
738
Normal
-0.1
232
Normal
-0.1
258
Normal
-0.1
867
Tumor
-0.1
436
Normal
-0.2
268
Normal
-0.2
365
Tumor
-0.2
915
Tumor
-0.2
977
Tumor
-0.2
492
Normal
-0.2
618
Normal
-0.2
728
Normal
-0.2
262
Normal
-0.2
111
Normal
-0.2
361
Tumor
-0.2
142
Normal
-0.2
368
Normal
-0.2
568
Normal
-0.2
278
Normal
-0.2
314
Normal
-0.2
494
Normal
-0.2
524
Normal
-0.2
558
Normal
-0.2
474
Normal
-0.2
392
Normal
-0.2
132
Normal
-0.2
564
Normal
-0.2
312
Normal
-0.2
456
Normal
-0.2
136
Normal
-0.2
778
Normal
-0.2
648
Normal
-0.2
628
Normal
-0.2
422
Normal
-0.2
138
Normal
-0.2
723
Tumor
-0.2
966
Normal
-0.2
462
Normal
-0.2
696
Normal
-0.2
964
Normal
-0.2
616
Normal
-0.2
976
Normal
-0.2
956
Normal
-0.2
446
Normal
-0.2
954
Normal
-0.2
943
Tumor
-0.2
952
Normal
-0.2
957
Tumor
-0.2
344
Normal
-0.2
432
Normal
-0.2
188
Normal
-0.2
196
Normal
-0.3
572
Normal
-0.3
272
Normal
-0.3
146
Normal
-0.3
464
Normal
-0.3
298
Normal
-0.3
394
Normal
-0.3
126
Normal
-0.3
756
Normal
-0.3
513
Tumor
-0.3
186
Normal
-0.3
128
Normal
-0.3
1026
Normal
-0.3
786
Normal
-0.3
286
Normal
-0.3
968
Normal
-0.3
574
Normal
-0.3
428
Normal
-0.3
488
Normal
-0.3
466
Normal
-0.3
431
Tumor
-0.3
228
Normal
-0.3
425
Tumor
-0.3
162
Normal
-0.3
918
Normal
-0.3
384
Normal
-0.3
172
Normal
-0.3
554
Normal
-0.3
212
Normal
-0.3
824
Normal
-0.3
938
Normal
-0.3
484
Normal
-0.3
472
Normal
-0.3
916
Normal
-0.3
922
Normal
-0.3
944
Normal
-0.3
926
Normal
-0.3
366
Normal
-0.3
376
Normal
-0.3
214
Normal
-0.3
518
Normal
-0.3
362
Normal
-0.3
468
Normal
-0.3
412
Normal
-0.3
396
Normal
-0.3
546
Normal
-0.3
356
Normal
-0.3
1022
Normal
-0.3
868
Normal
-0.3
426
Normal
-0.3
528
Normal
-0.3
1045
Tumor
-0.3
148
Normal
-0.3
465
Tumor
-0.4
878
Normal
-0.4
818
Normal
-0.4
352
Normal
-0.4
912
Normal
-0.4
884
Normal
-0.4
482
Normal
-0.4
563
Tumor
-0.4
1016
Normal
-0.4
742
Normal
-0.4
415
Tumor
-0.4
672
Normal
-0.4
444
Normal
-0.4
722
Normal
-0.4
213
Tumor
-0.4
686
Normal
-0.4
744
Normal
-0.4
386
Normal
-0.4
1032
Normal
-0.4
222
Normal
-0.4
923
Tumor
-0.4
874
Normal
-0.4
283
Tumor
-0.4
498
Normal
-0.4
958
Normal
-0.4
414
Normal
-0.4
882
Normal
-0.4
698
Normal
-0.4
858
Normal
-0.4
924
Normal
-0.4
364
Normal
-0.4
516
Normal
-0.4
342
Normal
-0.4
862
Normal
-0.4
448
Normal
-0.4
328
Normal
-0.4
358
Normal
-0.4
536
Normal
-0.4
514
Normal
-0.5
284
Normal
-0.5
538
Normal
-0.5
534
Normal
-0.5
978
Normal
-0.5
391
Tumor
-0.5
716
Normal
-0.5
416
Normal
-0.5
1044
Normal
-0.5
388
Normal
-0.5
816
Normal
-0.5
852
Normal
-0.5
1014
Normal
-0.5
982
Normal
-0.5
424
Normal
-0.5
864
Normal
-0.5
413
Tumor
-0.5
354
Normal
-0.5
224
Normal
-0.5
478
Normal
-0.5
866
Normal
-0.5
192
Normal
-0.6
714
Normal
-0.6
1046
Normal
-0.6
984
Normal
-0.6
1042
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
