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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAP2A is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
50.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
45.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
34.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
34.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
34.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
29.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
29.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
22.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAP2A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.5
Number of samples
231
Samples
Sample
Description
TPM
DO45263
0 years, male, NA, stage:3, dead, 270 days
55.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
38.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
33.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
33.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
27.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
26.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
25.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
25.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
24.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
24.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
23.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
21.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
863
Tumor
0.7
425
Tumor
0.6
815
Tumor
0.4
363
Tumor
0.4
737
Tumor
0.4
563
Tumor
0.4
851
Tumor
0.4
131
Tumor
0.4
617
Tumor
0.4
435
Tumor
0.3
391
Tumor
0.3
135
Tumor
0.3
742
Normal
0.3
223
Tumor
0.3
433
Tumor
0.3
738
Normal
0.3
824
Normal
0.2
884
Normal
0.2
868
Normal
0.2
686
Normal
0.2
185
Tumor
0.2
1031
Tumor
0.2
877
Tumor
0.2
462
Normal
0.2
483
Tumor
0.2
866
Normal
0.2
271
Tumor
0.2
984
Normal
0.2
528
Normal
0.2
912
Normal
0.2
467
Tumor
0.2
777
Tumor
0.2
432
Normal
0.2
728
Normal
0.2
816
Normal
0.2
818
Normal
0.2
384
Normal
0.2
461
Tumor
0.2
344
Normal
0.2
1016
Normal
0.2
874
Normal
0.2
227
Tumor
0.2
368
Normal
0.2
436
Normal
0.2
616
Normal
0.2
965
Tumor
0.2
746
Normal
0.1
864
Normal
0.1
913
Tumor
0.1
367
Tumor
0.1
661
Tumor
0.1
615
Tumor
0.1
723
Tumor
0.1
362
Normal
0.1
1025
Tumor
0.1
356
Normal
0.1
785
Tumor
0.1
857
Tumor
0.1
778
Normal
0.1
963
Tumor
0.1
882
Normal
0.1
724
Normal
0.1
523
Tumor
0.1
434
Normal
0.1
744
Normal
0.1
137
Tumor
0.1
978
Normal
0.1
376
Normal
0.1
755
Tumor
0.1
424
Normal
0.1
786
Normal
0.1
881
Tumor
0.1
716
Normal
0.1
921
Tumor
0.1
558
Normal
0.1
228
Normal
0.1
328
Normal
0.1
286
Normal
0.1
817
Tumor
0.1
618
Normal
0.1
914
Normal
0.1
964
Normal
0.1
627
Tumor
0.1
111
Normal
0.1
421
Tumor
0.1
564
Normal
0.1
1015
Tumor
0.1
628
Normal
0.1
721
Tumor
0.1
1021
Tumor
0.1
272
Normal
0.1
878
Normal
0.1
852
Normal
0.1
127
Tumor
0.1
352
Normal
0.1
196
Normal
0.1
1022
Normal
0.1
354
Normal
0.1
636
Normal
0.1
713
Tumor
0.1
447
Tumor
0.1
212
Normal
0.1
444
Normal
0.1
455
Tumor
0.1
312
Normal
0.1
146
Normal
0.1
138
Normal
0.1
284
Normal
0.1
478
Normal
0.1
187
Tumor
0.1
911
Tumor
0.1
862
Normal
0.1
571
Tumor
0.1
1046
Normal
0.1
1044
Normal
0.1
665
Tumor
0.1
353
Tumor
0.1
445
Tumor
0.1
387
Tumor
0.1
358
Normal
0.1
968
Normal
0.1
663
Tumor
0.1
492
Normal
0.1
448
Normal
0.1
517
Tumor
0.1
414
Normal
0.1
1027
Tumor
0.1
258
Normal
0.0
574
Normal
0.0
214
Normal
0.0
756
Normal
0.0
671
Tumor
0.0
422
Normal
0.0
527
Tumor
0.0
952
Normal
0.0
641
Tumor
0.0
192
Normal
0.0
1028
Normal
0.0
123
Tumor
0.0
472
Normal
0.0
727
Tumor
0.0
662
Normal
0.0
446
Normal
0.0
342
Normal
0.0
572
Normal
0.0
954
Normal
0.0
145
Tumor
0.0
648
Normal
0.0
188
Normal
0.0
698
Normal
0.0
498
Normal
0.0
1042
Normal
0.0
958
Normal
0.0
482
Normal
0.0
341
Tumor
0.0
858
Normal
0.0
224
Normal
0.0
867
Tumor
0.0
162
Normal
0.0
975
Tumor
0.0
132
Normal
0.0
113
Tumor
0.0
364
Normal
0.0
568
Normal
0.0
128
Normal
0.0
967
Tumor
0.0
396
Normal
0.0
297
Tumor
0.0
262
Normal
0.0
428
Normal
0.0
412
Normal
0.0
741
Tumor
0.0
416
Normal
0.0
366
Normal
0.0
526
Normal
0.0
518
Normal
0.0
982
Normal
0.0
966
Normal
0.0
217
Tumor
0.0
672
Normal
0.0
415
Tumor
0.0
514
Normal
0.0
567
Tumor
0.0
642
Normal
0.0
976
Normal
0.0
553
Tumor
0.0
221
Tumor
0.0
714
Normal
0.0
311
Tumor
0.0
126
Normal
0.0
722
Normal
0.0
494
Normal
0.0
392
Normal
0.0
1045
Tumor
0.0
635
Tumor
0.0
484
Normal
0.0
423
Tumor
0.0
922
Normal
0.0
314
Normal
0.0
861
Tumor
0.0
1026
Normal
0.0
883
Tumor
0.0
944
Normal
0.0
535
Tumor
0.0
464
Normal
0.0
136
Normal
0.0
916
Normal
0.0
685
Tumor
0.0
186
Normal
0.0
1032
Normal
0.0
114
Normal
0.0
1043
Tumor
0.0
493
Tumor
0.0
813
Tumor
0.0
278
Normal
0.0
232
Normal
0.0
195
Tumor
0.0
873
Tumor
0.0
161
Tumor
0.0
536
Normal
0.0
534
Normal
0.0
918
Normal
0.0
124
Normal
0.0
814
Normal
-0.1
388
Normal
-0.1
715
Tumor
-0.1
474
Normal
-0.1
697
Tumor
-0.1
394
Normal
-0.1
956
Normal
-0.1
148
Normal
-0.1
573
Tumor
-0.1
696
Normal
-0.1
926
Normal
-0.1
298
Normal
-0.1
383
Tumor
-0.1
666
Normal
-0.1
426
Normal
-0.1
277
Tumor
-0.1
546
Normal
-0.1
172
Normal
-0.1
487
Tumor
-0.1
537
Tumor
-0.1
386
Normal
-0.1
327
Tumor
-0.1
938
Normal
-0.1
142
Normal
-0.1
1014
Normal
-0.1
497
Tumor
-0.1
664
Normal
-0.1
261
Tumor
-0.1
283
Tumor
-0.1
456
Normal
-0.1
468
Normal
-0.1
977
Tumor
-0.1
222
Normal
-0.1
983
Tumor
-0.1
431
Tumor
-0.1
466
Normal
-0.1
823
Tumor
-0.1
147
Tumor
-0.1
471
Tumor
-0.1
481
Tumor
-0.1
268
Normal
-0.1
285
Tumor
-0.1
516
Normal
-0.1
218
Normal
-0.1
463
Tumor
-0.1
917
Tumor
-0.1
125
Tumor
-0.1
937
Tumor
-0.1
515
Tumor
-0.1
924
Normal
-0.1
171
Tumor
-0.2
343
Tumor
-0.2
411
Tumor
-0.2
375
Tumor
-0.2
231
Tumor
-0.2
943
Tumor
-0.2
488
Normal
-0.2
451
Tumor
-0.2
745
Tumor
-0.2
413
Tumor
-0.2
538
Normal
-0.2
393
Tumor
-0.2
332
Normal
-0.2
647
Tumor
-0.2
443
Tumor
-0.2
554
Normal
-0.2
743
Tumor
-0.2
452
Normal
-0.2
981
Tumor
-0.2
385
Tumor
-0.2
557
Tumor
-0.2
524
Normal
-0.2
491
Tumor
-0.2
141
Tumor
-0.2
915
Tumor
-0.2
191
Tumor
-0.2
351
Tumor
-0.2
211
Tumor
-0.2
955
Tumor
-0.3
365
Tumor
-0.3
545
Tumor
-0.3
213
Tumor
-0.3
953
Tumor
-0.3
361
Tumor
-0.3
525
Tumor
-0.3
331
Tumor
-0.3
925
Tumor
-0.3
695
Tumor
-0.3
477
Tumor
-0.3
1013
Tumor
-0.3
513
Tumor
-0.3
112
Tumor
-0.4
427
Tumor
-0.4
355
Tumor
-0.4
923
Tumor
-0.4
395
Tumor
-0.4
257
Tumor
-0.4
951
Tumor
-0.4
465
Tumor
-0.4
473
Tumor
-0.4
357
Tumor
-0.4
957
Tumor
-0.5
267
Tumor
-0.5
865
Tumor
-0.5
313
Tumor
-0.5
533
Tumor
-0.6
1041
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
