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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB17 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
42.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
165.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
138.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
127.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
118.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
113.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
109.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
107.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
106.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
103.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
99.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
95.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
94.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
92.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
91.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
90.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
90.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
90.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
87.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
86.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
86.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
84.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
84.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
83.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
82.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
82.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
82.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
81.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
78.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
77.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
76.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
73.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
73.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
73.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
73.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
73.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
73.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
73.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
72.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
72.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
71.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
70.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
70.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
70.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
70.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
69.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
69.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
69.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
69.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
69.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
69.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
67.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
67.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
67.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
66.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
65.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
65.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
64.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
64.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
63.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
63.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
63.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
63.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
63.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
62.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
62.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
62.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
61.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
61.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
61.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
60.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
60.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
60.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
60.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
59.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
59.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
59.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
59.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
59.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
58.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
58.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
57.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
57.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
57.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
56.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
56.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
56.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
55.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
55.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
55.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
55.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
54.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
54.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
54.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
54.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
54.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
53.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
53.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
53.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
53.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
52.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
52.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
52.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
52.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
51.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
51.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
51.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
51.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
51.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
50.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
50.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
50.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
50.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
50.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
50.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
49.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
49.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
49.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
49.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
49.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
48.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
48.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
48.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
48.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
48.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
48.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
48.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
48.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
48.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
47.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
47.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
47.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
47.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
46.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
46.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
46.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
46.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
46.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
46.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
46.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
46.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
45.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
45.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
45.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
45.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
45.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
45.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
45.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
45.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
45.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
44.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
44.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
44.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
44.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
43.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
43.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
43.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
43.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
42.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
42.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
42.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
42.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
42.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
42.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
42.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
41.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
40.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
40.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
40.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
40.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
40.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
39.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
39.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
39.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
39.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
39.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
39.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
39.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
39.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
39.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
39.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
39.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
38.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
38.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
38.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
37.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
37.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
37.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
37.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
37.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
37.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
36.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
36.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
36.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
36.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
36.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
36.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
35.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
35.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
35.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
35.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
35.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
35.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
34.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
34.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
34.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
34.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
34.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
34.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
34.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
34.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
34.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
33.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
33.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
33.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
33.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
33.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
32.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
32.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
32.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
32.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
32.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
32.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
32.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
32.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
32.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
31.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
31.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
31.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
31.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
31.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
31.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
31.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
31.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
31.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
31.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
30.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
30.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
30.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
30.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
30.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
30.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
30.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
30.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
30.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
29.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
29.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
29.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
29.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
29.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
29.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
29.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
29.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
28.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
28.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
28.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
28.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
28.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
27.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
27.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
27.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
27.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
27.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
27.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
26.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
26.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
26.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
26.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
25.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
25.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
24.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
24.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
24.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
23.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
21.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
21.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
20.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
19.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
17.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
16.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB17 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.6
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
257.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
138.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
133.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
131.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
118.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
117.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
115.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
98.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
97.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
93.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
90.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
89.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
86.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
86.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
83.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
82.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
81.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
76.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
75.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
73.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
72.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
70.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
69.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
67.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
66.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
64.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
64.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
63.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
63.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
63.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
62.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
61.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
60.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
60.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
58.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
57.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
57.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
56.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
55.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
54.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
54.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
54.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
53.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
51.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
51.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
50.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
50.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
50.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
50.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
49.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
49.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
48.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
48.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
46.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
46.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
45.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
45.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
45.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
44.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
44.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
44.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
43.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
42.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
42.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
42.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
42.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
42.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
41.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
40.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
40.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
39.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
39.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
39.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
39.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
38.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
38.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
38.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
38.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
38.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
38.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
38.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
38.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
37.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
37.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
37.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
37.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
37.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
37.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
37.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
37.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
36.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
36.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
36.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
35.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
35.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
35.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
35.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
35.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
35.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
34.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
34.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
34.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
33.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
33.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
33.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
32.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
32.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
32.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
32.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
32.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
31.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
31.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
31.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
31.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
30.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
30.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
29.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
29.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
29.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
29.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
28.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
28.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
28.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
28.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
27.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
27.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
27.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
27.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
26.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
26.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
26.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
25.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
25.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
24.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
23.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
22.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
22.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
19.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
695
Tumor
1.1
1027
Tumor
1.0
571
Tumor
0.9
546
Normal
0.7
618
Normal
0.7
462
Normal
0.7
572
Normal
0.7
742
Normal
0.6
568
Normal
0.6
1032
Normal
0.6
466
Normal
0.6
746
Normal
0.6
484
Normal
0.6
968
Normal
0.6
128
Normal
0.6
698
Normal
0.6
616
Normal
0.6
964
Normal
0.6
1014
Normal
0.6
878
Normal
0.6
132
Normal
0.6
862
Normal
0.6
356
Normal
0.6
1022
Normal
0.6
686
Normal
0.5
922
Normal
0.5
534
Normal
0.5
482
Normal
0.5
824
Normal
0.5
786
Normal
0.5
938
Normal
0.5
723
Tumor
0.5
696
Normal
0.5
967
Tumor
0.5
426
Normal
0.5
722
Normal
0.5
648
Normal
0.5
912
Normal
0.5
412
Normal
0.5
196
Normal
0.5
436
Normal
0.5
526
Normal
0.5
944
Normal
0.5
636
Normal
0.5
515
Tumor
0.5
448
Normal
0.5
222
Normal
0.5
564
Normal
0.5
481
Tumor
0.5
864
Normal
0.5
488
Normal
0.5
756
Normal
0.4
755
Tumor
0.4
494
Normal
0.4
785
Tumor
0.4
358
Normal
0.4
298
Normal
0.4
1046
Normal
0.4
728
Normal
0.4
918
Normal
0.4
111
Normal
0.4
376
Normal
0.4
314
Normal
0.4
714
Normal
0.4
328
Normal
0.4
514
Normal
0.4
1028
Normal
0.4
186
Normal
0.4
716
Normal
0.4
954
Normal
0.4
388
Normal
0.4
474
Normal
0.4
981
Tumor
0.4
924
Normal
0.4
142
Normal
0.4
1016
Normal
0.4
342
Normal
0.4
424
Normal
0.4
472
Normal
0.4
882
Normal
0.4
628
Normal
0.4
258
Normal
0.4
352
Normal
0.4
558
Normal
0.4
423
Tumor
0.4
984
Normal
0.3
422
Normal
0.3
982
Normal
0.3
278
Normal
0.3
364
Normal
0.3
127
Tumor
0.3
516
Normal
0.3
518
Normal
0.3
414
Normal
0.3
464
Normal
0.3
354
Normal
0.3
955
Tumor
0.3
148
Normal
0.3
172
Normal
0.3
958
Normal
0.3
396
Normal
0.3
978
Normal
0.3
778
Normal
0.3
1044
Normal
0.3
214
Normal
0.3
744
Normal
0.3
858
Normal
0.3
926
Normal
0.3
446
Normal
0.3
664
Normal
0.3
953
Tumor
0.3
218
Normal
0.3
528
Normal
0.3
721
Tumor
0.3
816
Normal
0.3
554
Normal
0.3
1026
Normal
0.3
818
Normal
0.3
672
Normal
0.3
642
Normal
0.3
428
Normal
0.2
874
Normal
0.2
493
Tumor
0.2
884
Normal
0.2
914
Normal
0.2
114
Normal
0.2
232
Normal
0.2
416
Normal
0.2
228
Normal
0.2
332
Normal
0.2
866
Normal
0.2
465
Tumor
0.2
976
Normal
0.2
284
Normal
0.2
452
Normal
0.2
738
Normal
0.2
286
Normal
0.2
368
Normal
0.2
913
Tumor
0.2
394
Normal
0.2
136
Normal
0.2
392
Normal
0.2
435
Tumor
0.2
966
Normal
0.2
443
Tumor
0.2
135
Tumor
0.2
384
Normal
0.2
852
Normal
0.2
956
Normal
0.2
432
Normal
0.2
615
Tumor
0.2
574
Normal
0.2
713
Tumor
0.2
952
Normal
0.2
1031
Tumor
0.2
868
Normal
0.2
468
Normal
0.2
257
Tumor
0.2
662
Normal
0.2
666
Normal
0.2
138
Normal
0.2
362
Normal
0.2
867
Tumor
0.2
1042
Normal
0.1
344
Normal
0.1
162
Normal
0.1
124
Normal
0.1
925
Tumor
0.1
524
Normal
0.1
312
Normal
0.1
461
Tumor
0.1
477
Tumor
0.1
498
Normal
0.1
357
Tumor
0.1
527
Tumor
0.1
212
Normal
0.1
327
Tumor
0.1
627
Tumor
0.0
743
Tumor
0.0
433
Tumor
0.0
815
Tumor
0.0
272
Normal
0.0
478
Normal
0.0
146
Normal
0.0
456
Normal
0.0
741
Tumor
0.0
353
Tumor
0.0
224
Normal
0.0
487
Tumor
0.0
963
Tumor
0.0
567
Tumor
0.0
171
Tumor
0.0
366
Normal
0.0
911
Tumor
0.0
126
Normal
0.0
916
Normal
0.0
873
Tumor
0.0
937
Tumor
-0.1
697
Tumor
-0.1
513
Tumor
-0.1
1043
Tumor
-0.1
434
Normal
-0.1
915
Tumor
-0.1
538
Normal
-0.1
1025
Tumor
-0.1
415
Tumor
-0.1
536
Normal
-0.1
137
Tumor
-0.1
553
Tumor
-0.1
663
Tumor
-0.1
563
Tumor
-0.1
411
Tumor
-0.1
492
Normal
-0.1
261
Tumor
-0.1
777
Tumor
-0.1
865
Tumor
-0.1
145
Tumor
-0.1
393
Tumor
-0.2
573
Tumor
-0.2
361
Tumor
-0.2
113
Tumor
-0.2
483
Tumor
-0.2
471
Tumor
-0.2
386
Normal
-0.2
447
Tumor
-0.2
268
Normal
-0.2
957
Tumor
-0.2
262
Normal
-0.2
473
Tumor
-0.2
1045
Tumor
-0.2
863
Tumor
-0.2
1041
Tumor
-0.2
141
Tumor
-0.2
444
Normal
-0.2
557
Tumor
-0.3
191
Tumor
-0.3
123
Tumor
-0.3
1015
Tumor
-0.3
227
Tumor
-0.3
975
Tumor
-0.3
641
Tumor
-0.3
271
Tumor
-0.3
533
Tumor
-0.3
823
Tumor
-0.3
147
Tumor
-0.3
267
Tumor
-0.3
313
Tumor
-0.3
297
Tumor
-0.3
857
Tumor
-0.3
112
Tumor
-0.3
455
Tumor
-0.3
431
Tumor
-0.3
861
Tumor
-0.3
445
Tumor
-0.3
188
Normal
-0.3
217
Tumor
-0.3
715
Tumor
-0.4
883
Tumor
-0.4
192
Normal
-0.4
427
Tumor
-0.4
285
Tumor
-0.4
921
Tumor
-0.4
685
Tumor
-0.4
977
Tumor
-0.4
131
Tumor
-0.4
727
Tumor
-0.4
983
Tumor
-0.4
355
Tumor
-0.5
213
Tumor
-0.5
425
Tumor
-0.5
125
Tumor
-0.5
923
Tumor
-0.5
647
Tumor
-0.5
185
Tumor
-0.5
525
Tumor
-0.6
331
Tumor
-0.6
1021
Tumor
-0.6
221
Tumor
-0.6
881
Tumor
-0.6
877
Tumor
-0.6
951
Tumor
-0.6
195
Tumor
-0.6
421
Tumor
-0.6
517
Tumor
-0.6
813
Tumor
-0.6
943
Tumor
-0.6
231
Tumor
-0.6
1013
Tumor
-0.6
745
Tumor
-0.6
523
Tumor
-0.7
545
Tumor
-0.7
635
Tumor
-0.7
737
Tumor
-0.7
617
Tumor
-0.7
413
Tumor
-0.7
671
Tumor
-0.7
814
Normal
-0.7
161
Tumor
-0.7
537
Tumor
-0.7
341
Tumor
-0.8
187
Tumor
-0.8
383
Tumor
-0.8
491
Tumor
-0.8
451
Tumor
-0.8
223
Tumor
-0.8
365
Tumor
-0.8
387
Tumor
-0.8
367
Tumor
-0.8
277
Tumor
-0.9
497
Tumor
-0.9
395
Tumor
-0.9
817
Tumor
-0.9
375
Tumor
-1.0
391
Tumor
-1.0
363
Tumor
-1.0
917
Tumor
-1.0
343
Tumor
-1.0
283
Tumor
-1.0
385
Tumor
-1.1
463
Tumor
-1.1
467
Tumor
-1.2
965
Tumor
-1.2
311
Tumor
-1.2
351
Tumor
-1.2
724
Normal
-1.2
665
Tumor
-1.2
851
Tumor
-1.4
661
Tumor
-1.4
211
Tumor
-2.0
535
Tumor
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
