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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UNC5CL is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
111.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
94.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
87.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
77.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
59.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
58.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
58.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
55.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
40.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
39.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
33.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
32.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
31.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
30.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
29.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
29.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
26.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
24.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
24.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
14.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UNC5CL is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.5
Number of samples
231
Samples
Sample
Description
TPM
DO23544
0 years, male, NA, stage:2, alive, 960 days
127.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
108.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
92.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
88.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
83.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
82.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
74.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
73.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
66.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
61.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
57.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
56.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
54.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
51.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
45.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
44.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
44.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
42.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
41.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
40.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
38.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
38.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
38.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
35.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
34.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
31.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
30.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
29.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
29.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
29.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
28.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
27.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
26.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
26.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
26.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
25.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
24.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
24.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
24.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
22.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1025
Tumor
2.1
131
Tumor
2.0
493
Tumor
1.6
467
Tumor
1.3
877
Tumor
1.2
353
Tumor
1.2
921
Tumor
1.2
497
Tumor
1.2
715
Tumor
1.0
823
Tumor
1.0
937
Tumor
1.0
358
Normal
0.9
1043
Tumor
0.9
483
Tumor
0.8
786
Normal
0.8
975
Tumor
0.8
778
Normal
0.8
426
Normal
0.8
425
Tumor
0.8
343
Tumor
0.7
1026
Normal
0.7
746
Normal
0.7
685
Tumor
0.7
187
Tumor
0.6
857
Tumor
0.6
147
Tumor
0.6
756
Normal
0.6
137
Tumor
0.5
553
Tumor
0.5
924
Normal
0.5
533
Tumor
0.5
421
Tumor
0.5
422
Normal
0.5
344
Normal
0.5
361
Tumor
0.5
268
Normal
0.4
545
Tumor
0.4
514
Normal
0.4
341
Tumor
0.4
272
Normal
0.4
554
Normal
0.4
952
Normal
0.4
814
Normal
0.4
145
Tumor
0.4
513
Tumor
0.4
557
Tumor
0.4
262
Normal
0.4
191
Tumor
0.4
366
Normal
0.4
957
Tumor
0.4
192
Normal
0.4
815
Tumor
0.4
447
Tumor
0.3
494
Normal
0.3
923
Tumor
0.3
686
Normal
0.3
471
Tumor
0.3
713
Tumor
0.3
222
Normal
0.3
217
Tumor
0.3
218
Normal
0.3
817
Tumor
0.3
526
Normal
0.3
1045
Tumor
0.3
524
Normal
0.3
383
Tumor
0.3
1021
Tumor
0.3
956
Normal
0.2
232
Normal
0.2
492
Normal
0.2
568
Normal
0.2
863
Tumor
0.2
564
Normal
0.2
427
Tumor
0.2
874
Normal
0.2
354
Normal
0.2
558
Normal
0.2
428
Normal
0.2
515
Tumor
0.2
527
Tumor
0.2
213
Tumor
0.2
695
Tumor
0.2
534
Normal
0.2
352
Normal
0.2
196
Normal
0.2
716
Normal
0.2
523
Tumor
0.1
424
Normal
0.1
472
Normal
0.1
873
Tumor
0.1
455
Tumor
0.1
914
Normal
0.1
195
Tumor
0.1
528
Normal
0.1
723
Tumor
0.1
1022
Normal
0.1
728
Normal
0.1
745
Tumor
0.1
464
Normal
0.1
484
Normal
0.1
538
Normal
0.1
755
Tumor
0.1
572
Normal
0.1
414
Normal
0.1
384
Normal
0.1
777
Tumor
0.1
955
Tumor
0.1
481
Tumor
0.1
488
Normal
0.1
867
Tumor
0.1
868
Normal
0.0
482
Normal
0.0
881
Tumor
0.0
813
Tumor
0.0
922
Normal
0.0
138
Normal
0.0
916
Normal
0.0
1042
Normal
0.0
474
Normal
0.0
518
Normal
0.0
362
Normal
0.0
462
Normal
0.0
452
Normal
0.0
721
Tumor
0.0
376
Normal
0.0
517
Tumor
0.0
944
Normal
0.0
478
Normal
0.0
866
Normal
0.0
423
Tumor
0.0
461
Tumor
0.0
861
Tumor
-0.1
546
Normal
-0.1
574
Normal
-0.1
938
Normal
-0.1
451
Tumor
-0.1
968
Normal
-0.1
368
Normal
-0.1
737
Tumor
-0.1
696
Normal
-0.1
456
Normal
-0.1
858
Normal
-0.1
883
Tumor
-0.1
473
Tumor
-0.1
964
Normal
-0.1
738
Normal
-0.1
742
Normal
-0.1
785
Tumor
-0.1
342
Normal
-0.1
851
Tumor
-0.1
824
Normal
-0.1
258
Normal
-0.1
727
Tumor
-0.2
862
Normal
-0.2
536
Normal
-0.2
917
Tumor
-0.2
571
Tumor
-0.2
1046
Normal
-0.2
744
Normal
-0.2
214
Normal
-0.2
413
Tumor
-0.2
516
Normal
-0.2
135
Tumor
-0.2
466
Normal
-0.2
722
Normal
-0.2
535
Tumor
-0.2
966
Normal
-0.2
448
Normal
-0.2
1028
Normal
-0.2
267
Tumor
-0.2
573
Tumor
-0.3
465
Tumor
-0.3
926
Normal
-0.3
468
Normal
-0.3
714
Normal
-0.3
498
Normal
-0.3
816
Normal
-0.3
915
Tumor
-0.3
185
Tumor
-0.3
221
Tumor
-0.3
563
Tumor
-0.3
884
Normal
-0.3
257
Tumor
-0.3
925
Tumor
-0.3
864
Normal
-0.3
477
Tumor
-0.3
918
Normal
-0.3
912
Normal
-0.3
953
Tumor
-0.3
913
Tumor
-0.3
698
Normal
-0.3
525
Tumor
-0.4
148
Normal
-0.4
567
Tumor
-0.4
954
Normal
-0.4
491
Tumor
-0.4
743
Tumor
-0.4
1044
Normal
-0.4
132
Normal
-0.4
357
Tumor
-0.4
271
Tumor
-0.4
231
Tumor
-0.5
976
Normal
-0.5
852
Normal
-0.5
367
Tumor
-0.5
878
Normal
-0.5
537
Tumor
-0.5
911
Tumor
-0.5
951
Tumor
-0.5
958
Normal
-0.5
351
Tumor
-0.5
261
Tumor
-0.6
865
Tumor
-0.6
463
Tumor
-0.6
697
Tumor
-0.6
1031
Tumor
-0.6
741
Tumor
-0.6
161
Tumor
-0.6
365
Tumor
-0.6
724
Normal
-0.7
375
Tumor
-0.7
818
Normal
-0.7
963
Tumor
-0.7
487
Tumor
-0.7
136
Normal
-0.7
186
Normal
-0.7
142
Normal
-0.7
967
Tumor
-0.8
943
Tumor
-0.8
1041
Tumor
-0.8
882
Normal
-0.8
188
Normal
-0.8
1032
Normal
-0.9
162
Normal
-0.9
172
Normal
-1.2
1027
Tumor
-1.2
146
Normal
-1.2
141
Tumor
-1.3
965
Tumor
-1.4
171
Tumor
-1.8
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
388
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
415
Tumor
N/A
416
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
665
Tumor
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
312
Normal
N/A
433
Tumor
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
331
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
212
Normal
N/A
223
Tumor
N/A
224
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
