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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PEX6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
82.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
65.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
62.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
61.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
60.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
59.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
59.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
55.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
54.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
50.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
49.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
44.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
42.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
41.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
41.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
40.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
39.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
39.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
37.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
37.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
36.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
35.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
35.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
35.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
35.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
35.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
35.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
34.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
34.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
34.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
34.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
34.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
34.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
34.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
33.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
33.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
33.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
33.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
32.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
32.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
31.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
31.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
31.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
31.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
30.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
30.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
30.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
30.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
30.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
29.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
29.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
29.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
29.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
29.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
29.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
28.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
28.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
28.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
28.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
28.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
28.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
27.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
27.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
27.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
27.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
26.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
26.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
26.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
25.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
25.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
24.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
23.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
23.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
23.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
23.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
23.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
23.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
22.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
22.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
21.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
21.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
20.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
20.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
20.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
20.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
20.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
15.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
5.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PEX6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.0
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
51.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
48.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
45.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
44.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
43.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
43.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
37.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
36.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
35.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
32.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
29.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
29.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
29.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
28.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
28.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
27.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
26.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
25.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
24.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
1.0
925
Tumor
1.0
443
Tumor
0.9
911
Tumor
0.9
635
Tumor
0.8
727
Tumor
0.8
1041
Tumor
0.8
341
Tumor
0.8
257
Tumor
0.8
937
Tumor
0.7
137
Tumor
0.7
913
Tumor
0.7
615
Tumor
0.7
231
Tumor
0.7
915
Tumor
0.7
365
Tumor
0.7
427
Tumor
0.6
755
Tumor
0.6
477
Tumor
0.6
745
Tumor
0.6
957
Tumor
0.5
361
Tumor
0.5
267
Tumor
0.5
353
Tumor
0.5
571
Tumor
0.5
1045
Tumor
0.5
171
Tumor
0.5
387
Tumor
0.5
513
Tumor
0.4
423
Tumor
0.4
313
Tumor
0.4
261
Tumor
0.4
981
Tumor
0.4
527
Tumor
0.4
465
Tumor
0.4
123
Tumor
0.4
471
Tumor
0.4
785
Tumor
0.4
227
Tumor
0.4
222
Normal
0.4
195
Tumor
0.3
483
Tumor
0.3
127
Tumor
0.3
421
Tumor
0.3
446
Normal
0.3
363
Tumor
0.3
1027
Tumor
0.3
921
Tumor
0.3
314
Normal
0.3
432
Normal
0.3
436
Normal
0.3
867
Tumor
0.3
481
Tumor
0.3
132
Normal
0.3
388
Normal
0.3
428
Normal
0.3
425
Tumor
0.3
557
Tumor
0.3
221
Tumor
0.3
641
Tumor
0.3
136
Normal
0.3
445
Tumor
0.2
268
Normal
0.2
435
Tumor
0.2
627
Tumor
0.2
258
Normal
0.2
384
Normal
0.2
196
Normal
0.2
218
Normal
0.2
452
Normal
0.2
162
Normal
0.2
737
Tumor
0.2
232
Normal
0.2
213
Tumor
0.2
464
Normal
0.2
424
Normal
0.2
376
Normal
0.2
865
Tumor
0.2
955
Tumor
0.2
368
Normal
0.2
953
Tumor
0.2
553
Tumor
0.2
278
Normal
0.2
868
Normal
0.1
563
Tumor
0.1
277
Tumor
0.1
272
Normal
0.1
451
Tumor
0.1
366
Normal
0.1
414
Normal
0.1
515
Tumor
0.1
823
Tumor
0.1
954
Normal
0.1
912
Normal
0.1
172
Normal
0.1
466
Normal
0.1
332
Normal
0.1
357
Tumor
0.1
433
Tumor
0.1
426
Normal
0.1
1043
Tumor
0.1
187
Tumor
0.1
186
Normal
0.1
145
Tumor
0.1
392
Normal
0.1
534
Normal
0.1
861
Tumor
0.1
312
Normal
0.1
482
Normal
0.1
185
Tumor
0.1
396
Normal
0.1
884
Normal
0.1
468
Normal
0.1
666
Normal
0.1
148
Normal
0.1
647
Tumor
0.1
648
Normal
0.1
1022
Normal
0.1
192
Normal
0.1
878
Normal
0.1
262
Normal
0.1
883
Tumor
0.1
977
Tumor
0.1
777
Tumor
0.1
728
Normal
0.1
394
Normal
0.1
112
Tumor
0.1
191
Tumor
0.1
214
Normal
0.1
362
Normal
0.0
493
Tumor
0.0
967
Tumor
0.0
138
Normal
0.0
1042
Normal
0.0
412
Normal
0.0
914
Normal
0.0
517
Tumor
0.0
456
Normal
0.0
938
Normal
0.0
461
Tumor
0.0
188
Normal
0.0
147
Tumor
0.0
695
Tumor
0.0
1031
Tumor
0.0
146
Normal
0.0
863
Tumor
0.0
422
Normal
0.0
526
Normal
0.0
395
Tumor
0.0
618
Normal
0.0
923
Tumor
0.0
858
Normal
0.0
411
Tumor
0.0
956
Normal
0.0
141
Tumor
0.0
1021
Tumor
0.0
664
Normal
0.0
142
Normal
0.0
386
Normal
0.0
857
Tumor
0.0
462
Normal
0.0
367
Tumor
0.0
514
Normal
0.0
663
Tumor
0.0
864
Normal
0.0
298
Normal
0.0
393
Tumor
0.0
636
Normal
0.0
217
Tumor
0.0
484
Normal
0.0
271
Tumor
0.0
882
Normal
0.0
642
Normal
0.0
286
Normal
0.0
874
Normal
0.0
922
Normal
0.0
1025
Tumor
0.0
746
Normal
0.0
564
Normal
0.0
1028
Normal
0.0
665
Tumor
0.0
685
Tumor
0.0
356
Normal
0.0
866
Normal
0.0
1032
Normal
0.0
786
Normal
0.0
568
Normal
0.0
862
Normal
0.0
572
Normal
0.0
697
Tumor
0.0
487
Tumor
0.0
662
Normal
0.0
494
Normal
0.0
444
Normal
-0.1
713
Tumor
-0.1
538
Normal
-0.1
714
Normal
-0.1
473
Tumor
-0.1
951
Tumor
-0.1
824
Normal
-0.1
944
Normal
-0.1
223
Tumor
-0.1
114
Normal
-0.1
328
Normal
-0.1
672
Normal
-0.1
124
Normal
-0.1
738
Normal
-0.1
354
Normal
-0.1
472
Normal
-0.1
474
Normal
-0.1
964
Normal
-0.1
616
Normal
-0.1
284
Normal
-0.1
416
Normal
-0.1
228
Normal
-0.1
128
Normal
-0.1
497
Tumor
-0.1
488
Normal
-0.1
1015
Tumor
-0.1
722
Normal
-0.1
391
Tumor
-0.1
358
Normal
-0.1
383
Tumor
-0.1
111
Normal
-0.1
873
Tumor
-0.1
224
Normal
-0.1
698
Normal
-0.1
918
Normal
-0.1
1046
Normal
-0.1
818
Normal
-0.1
126
Normal
-0.2
528
Normal
-0.2
926
Normal
-0.2
342
Normal
-0.2
742
Normal
-0.2
574
Normal
-0.2
916
Normal
-0.2
498
Normal
-0.2
1014
Normal
-0.2
975
Tumor
-0.2
628
Normal
-0.2
968
Normal
-0.2
467
Tumor
-0.2
518
Normal
-0.2
924
Normal
-0.2
723
Tumor
-0.2
546
Normal
-0.2
756
Normal
-0.2
1026
Normal
-0.2
343
Tumor
-0.2
478
Normal
-0.2
434
Normal
-0.2
852
Normal
-0.2
978
Normal
-0.2
567
Tumor
-0.2
881
Tumor
-0.2
364
Normal
-0.2
1016
Normal
-0.2
554
Normal
-0.2
375
Tumor
-0.2
537
Tumor
-0.2
778
Normal
-0.2
558
Normal
-0.2
161
Tumor
-0.2
212
Normal
-0.2
982
Normal
-0.2
816
Normal
-0.2
958
Normal
-0.2
976
Normal
-0.2
431
Tumor
-0.3
492
Normal
-0.3
415
Tumor
-0.3
448
Normal
-0.3
715
Tumor
-0.3
516
Normal
-0.3
573
Tumor
-0.3
686
Normal
-0.3
952
Normal
-0.3
297
Tumor
-0.3
524
Normal
-0.3
331
Tumor
-0.3
113
Tumor
-0.3
344
Normal
-0.3
741
Tumor
-0.3
455
Tumor
-0.3
716
Normal
-0.3
523
Tumor
-0.3
965
Tumor
-0.3
617
Tumor
-0.3
352
Normal
-0.3
1013
Tumor
-0.3
1044
Normal
-0.3
525
Tumor
-0.3
744
Normal
-0.3
135
Tumor
-0.4
814
Normal
-0.4
696
Normal
-0.4
984
Normal
-0.4
463
Tumor
-0.4
671
Tumor
-0.4
743
Tumor
-0.4
327
Tumor
-0.4
385
Tumor
-0.4
963
Tumor
-0.4
351
Tumor
-0.4
413
Tumor
-0.5
125
Tumor
-0.5
491
Tumor
-0.5
447
Tumor
-0.5
721
Tumor
-0.5
536
Normal
-0.5
815
Tumor
-0.5
877
Tumor
-0.5
966
Normal
-0.5
661
Tumor
-0.5
983
Tumor
-0.6
355
Tumor
-0.6
813
Tumor
-0.6
917
Tumor
-0.6
943
Tumor
-0.6
311
Tumor
-0.6
131
Tumor
-0.6
545
Tumor
-0.6
535
Tumor
-0.6
283
Tumor
-0.8
851
Tumor
-0.8
285
Tumor
-0.9
817
Tumor
-1.2
211
Tumor
-1.2
724
Normal
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
