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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SIRT5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
51.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
51.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
48.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
48.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
43.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
39.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
39.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
38.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
35.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
35.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
33.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
31.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
29.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
28.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
28.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
28.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
28.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
27.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
27.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
26.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
26.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
26.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
26.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
26.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
24.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
24.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
23.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
21.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
21.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
20.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
20.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
20.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
20.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
17.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
17.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
14.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
12.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
8.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SIRT5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.6
Number of samples
231
Samples
Sample
Description
TPM
DO50817
0 years, male, NA, stage:2, alive, 390 days
49.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
31.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
28.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
26.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
24.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
13.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1041
Tumor
1.4
981
Tumor
1.2
627
Tumor
1.0
911
Tumor
1.0
465
Tumor
0.8
227
Tumor
0.8
553
Tumor
0.7
477
Tumor
0.7
1043
Tumor
0.7
517
Tumor
0.6
127
Tumor
0.6
128
Normal
0.6
232
Normal
0.6
186
Normal
0.6
715
Tumor
0.6
738
Normal
0.6
452
Normal
0.6
214
Normal
0.6
1032
Normal
0.6
1022
Normal
0.6
925
Tumor
0.5
616
Normal
0.5
742
Normal
0.5
448
Normal
0.5
172
Normal
0.5
967
Tumor
0.5
648
Normal
0.5
1015
Tumor
0.5
132
Normal
0.5
564
Normal
0.5
222
Normal
0.5
861
Tumor
0.5
878
Normal
0.5
922
Normal
0.5
196
Normal
0.5
864
Normal
0.5
867
Tumor
0.5
112
Tumor
0.5
342
Normal
0.5
746
Normal
0.5
568
Normal
0.5
698
Normal
0.5
924
Normal
0.5
388
Normal
0.5
636
Normal
0.5
114
Normal
0.5
1045
Tumor
0.5
728
Normal
0.5
436
Normal
0.5
862
Normal
0.5
426
Normal
0.4
723
Tumor
0.4
618
Normal
0.4
546
Normal
0.4
422
Normal
0.4
714
Normal
0.4
358
Normal
0.4
494
Normal
0.4
484
Normal
0.4
261
Tumor
0.4
1026
Normal
0.4
428
Normal
0.4
124
Normal
0.4
148
Normal
0.4
755
Tumor
0.4
278
Normal
0.4
696
Normal
0.4
538
Normal
0.4
162
Normal
0.4
571
Tumor
0.4
366
Normal
0.4
111
Normal
0.4
462
Normal
0.4
258
Normal
0.4
686
Normal
0.4
716
Normal
0.4
228
Normal
0.4
423
Tumor
0.4
268
Normal
0.4
488
Normal
0.4
298
Normal
0.4
918
Normal
0.4
744
Normal
0.4
332
Normal
0.4
412
Normal
0.4
1046
Normal
0.4
572
Normal
0.4
756
Normal
0.4
474
Normal
0.4
142
Normal
0.4
534
Normal
0.4
868
Normal
0.4
914
Normal
0.3
314
Normal
0.3
874
Normal
0.3
518
Normal
0.3
912
Normal
0.3
954
Normal
0.3
642
Normal
0.3
786
Normal
0.3
824
Normal
0.3
487
Tumor
0.3
1028
Normal
0.3
432
Normal
0.3
424
Normal
0.3
272
Normal
0.3
873
Tumor
0.3
938
Normal
0.3
1016
Normal
0.3
1044
Normal
0.3
446
Normal
0.3
396
Normal
0.3
722
Normal
0.3
218
Normal
0.3
662
Normal
0.3
741
Tumor
0.3
312
Normal
0.3
526
Normal
0.3
685
Tumor
0.3
866
Normal
0.3
138
Normal
0.3
146
Normal
0.3
414
Normal
0.3
882
Normal
0.3
915
Tumor
0.3
937
Tumor
0.3
641
Tumor
0.3
858
Normal
0.3
635
Tumor
0.3
628
Normal
0.3
368
Normal
0.3
136
Normal
0.3
468
Normal
0.3
464
Normal
0.3
944
Normal
0.3
362
Normal
0.3
466
Normal
0.3
354
Normal
0.3
574
Normal
0.3
778
Normal
0.3
262
Normal
0.3
1042
Normal
0.3
955
Tumor
0.3
926
Normal
0.2
344
Normal
0.2
394
Normal
0.2
952
Normal
0.2
376
Normal
0.2
356
Normal
0.2
968
Normal
0.2
472
Normal
0.2
852
Normal
0.2
615
Tumor
0.2
984
Normal
0.2
443
Tumor
0.2
516
Normal
0.2
286
Normal
0.2
328
Normal
0.2
916
Normal
0.2
126
Normal
0.2
818
Normal
0.2
363
Tumor
0.2
528
Normal
0.2
956
Normal
0.2
721
Tumor
0.2
816
Normal
0.2
386
Normal
0.2
456
Normal
0.2
695
Tumor
0.2
958
Normal
0.2
212
Normal
0.2
664
Normal
0.2
416
Normal
0.2
554
Normal
0.2
188
Normal
0.2
364
Normal
0.2
982
Normal
0.1
224
Normal
0.1
558
Normal
0.1
492
Normal
0.1
743
Tumor
0.1
976
Normal
0.1
352
Normal
0.1
1014
Normal
0.1
482
Normal
0.1
145
Tumor
0.1
514
Normal
0.1
921
Tumor
0.1
434
Normal
0.1
964
Normal
0.1
392
Normal
0.1
884
Normal
0.1
977
Tumor
0.1
966
Normal
0.1
355
Tumor
0.1
913
Tumor
0.1
1031
Tumor
0.1
221
Tumor
0.1
271
Tumor
0.1
191
Tumor
0.1
284
Normal
0.1
341
Tumor
0.1
444
Normal
0.1
745
Tumor
0.1
113
Tumor
0.1
365
Tumor
0.1
817
Tumor
0.0
491
Tumor
0.0
713
Tumor
0.0
951
Tumor
0.0
384
Normal
0.0
353
Tumor
0.0
433
Tumor
0.0
666
Normal
0.0
513
Tumor
0.0
131
Tumor
0.0
1025
Tumor
0.0
563
Tumor
0.0
192
Normal
0.0
785
Tumor
0.0
978
Normal
0.0
493
Tumor
0.0
231
Tumor
0.0
672
Normal
0.0
498
Normal
0.0
123
Tumor
0.0
923
Tumor
0.0
665
Tumor
0.0
445
Tumor
0.0
481
Tumor
0.0
451
Tumor
0.0
187
Tumor
-0.1
171
Tumor
-0.1
877
Tumor
-0.1
823
Tumor
-0.1
478
Normal
-0.1
411
Tumor
-0.1
137
Tumor
-0.1
331
Tumor
-0.1
536
Normal
-0.1
573
Tumor
-0.1
217
Tumor
-0.1
141
Tumor
-0.1
415
Tumor
-0.1
524
Normal
-0.1
361
Tumor
-0.1
497
Tumor
-0.2
391
Tumor
-0.2
671
Tumor
-0.2
857
Tumor
-0.2
447
Tumor
-0.2
863
Tumor
-0.2
393
Tumor
-0.2
435
Tumor
-0.2
431
Tumor
-0.2
327
Tumor
-0.2
471
Tumor
-0.2
135
Tumor
-0.2
185
Tumor
-0.3
267
Tumor
-0.3
557
Tumor
-0.3
461
Tumor
-0.3
515
Tumor
-0.3
1027
Tumor
-0.3
257
Tumor
-0.3
483
Tumor
-0.3
917
Tumor
-0.3
297
Tumor
-0.3
883
Tumor
-0.3
161
Tumor
-0.3
727
Tumor
-0.3
473
Tumor
-0.3
357
Tumor
-0.4
421
Tumor
-0.4
195
Tumor
-0.4
313
Tumor
-0.4
957
Tumor
-0.4
425
Tumor
-0.4
697
Tumor
-0.4
975
Tumor
-0.4
963
Tumor
-0.4
777
Tumor
-0.4
663
Tumor
-0.4
533
Tumor
-0.4
367
Tumor
-0.4
1013
Tumor
-0.5
213
Tumor
-0.5
953
Tumor
-0.5
617
Tumor
-0.5
545
Tumor
-0.5
467
Tumor
-0.5
463
Tumor
-0.5
814
Normal
-0.5
537
Tumor
-0.5
647
Tumor
-0.6
523
Tumor
-0.6
147
Tumor
-0.6
567
Tumor
-0.6
385
Tumor
-0.6
383
Tumor
-0.6
413
Tumor
-0.6
865
Tumor
-0.6
277
Tumor
-0.6
223
Tumor
-0.6
881
Tumor
-0.6
455
Tumor
-0.6
387
Tumor
-0.6
535
Tumor
-0.6
343
Tumor
-0.6
943
Tumor
-0.7
527
Tumor
-0.7
724
Normal
-0.7
125
Tumor
-0.7
851
Tumor
-0.7
285
Tumor
-0.7
1021
Tumor
-0.7
983
Tumor
-0.7
965
Tumor
-0.7
375
Tumor
-0.8
525
Tumor
-0.8
737
Tumor
-0.8
815
Tumor
-0.8
311
Tumor
-0.8
395
Tumor
-0.8
813
Tumor
-0.9
351
Tumor
-0.9
427
Tumor
-0.9
211
Tumor
-1.2
661
Tumor
-1.2
283
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
