We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
USP22 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
118.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
106.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
89.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
88.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
77.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
75.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
74.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
72.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
66.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
63.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
63.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
61.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
59.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
59.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
58.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
57.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
57.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
57.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
56.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
54.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
53.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
52.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
51.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
50.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
49.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
49.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
48.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
48.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
47.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
47.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
47.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
46.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
46.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
44.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
44.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
44.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
44.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
44.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
43.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
43.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
42.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
42.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
42.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
41.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
40.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
40.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
40.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
40.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
39.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
39.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
38.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
38.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
38.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
37.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
37.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
36.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
36.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
36.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
35.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
35.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
35.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
34.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
34.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
34.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
34.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
34.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
33.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
33.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
33.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
33.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
32.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
32.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
32.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
32.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
31.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
31.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
31.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
31.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
31.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
30.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
30.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
30.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
30.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
30.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
30.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
29.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
29.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
29.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
29.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
29.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
29.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
28.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
28.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
28.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
27.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
27.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
27.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
27.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
27.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
27.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
27.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
27.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
26.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
26.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
26.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
26.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
25.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
25.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
25.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
25.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
25.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
24.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
24.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
24.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
24.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
23.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
23.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
23.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
23.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
23.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
22.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
22.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
22.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
22.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
22.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
21.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
21.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
21.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
21.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
21.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
20.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
20.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
20.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
20.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
19.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
17.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
16.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
16.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
USP22 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.9
Number of samples
231
Samples
Sample
Description
TPM
DO45193
0 years, female, NA, stage:4, dead, 120 days
126.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
67.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
61.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
54.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
53.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
52.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
51.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
50.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
49.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
48.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
47.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
46.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
46.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
45.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
44.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
44.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
43.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
43.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
42.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
42.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
41.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
40.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
38.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
37.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
37.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
37.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
36.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
36.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
36.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
35.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
34.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
34.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
34.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
34.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
33.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
32.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
32.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
31.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
31.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
30.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
30.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
30.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
30.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
29.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
29.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
29.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
29.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
28.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
28.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
28.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
28.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
27.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
27.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
26.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
25.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
25.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
25.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
25.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
25.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
24.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
24.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
24.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
22.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
22.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
661
Tumor
1.2
815
Tumor
1.1
965
Tumor
1.0
557
Tumor
1.0
967
Tumor
0.9
283
Tumor
0.9
671
Tumor
0.8
285
Tumor
0.8
917
Tumor
0.8
231
Tumor
0.8
535
Tumor
0.8
258
Normal
0.8
533
Tumor
0.7
851
Tumor
0.7
232
Normal
0.7
685
Tumor
0.7
817
Tumor
0.7
127
Tumor
0.6
351
Tumor
0.6
573
Tumor
0.6
268
Normal
0.6
272
Normal
0.6
477
Tumor
0.5
567
Tumor
0.5
957
Tumor
0.5
943
Tumor
0.5
112
Tumor
0.5
517
Tumor
0.5
267
Tumor
0.5
1031
Tumor
0.5
1025
Tumor
0.5
951
Tumor
0.5
715
Tumor
0.5
937
Tumor
0.5
367
Tumor
0.5
647
Tumor
0.5
463
Tumor
0.4
217
Tumor
0.4
262
Normal
0.4
525
Tumor
0.4
227
Tumor
0.4
537
Tumor
0.4
271
Tumor
0.4
355
Tumor
0.4
161
Tumor
0.4
221
Tumor
0.4
413
Tumor
0.4
865
Tumor
0.4
147
Tumor
0.3
473
Tumor
0.3
427
Tumor
0.3
737
Tumor
0.3
1021
Tumor
0.3
113
Tumor
0.3
261
Tumor
0.3
553
Tumor
0.3
713
Tumor
0.3
123
Tumor
0.3
467
Tumor
0.3
1013
Tumor
0.3
443
Tumor
0.3
745
Tumor
0.3
375
Tumor
0.2
391
Tumor
0.2
131
Tumor
0.2
755
Tumor
0.2
411
Tumor
0.2
185
Tumor
0.2
814
Normal
0.2
545
Tumor
0.2
213
Tumor
0.2
975
Tumor
0.2
192
Normal
0.2
435
Tumor
0.2
777
Tumor
0.2
436
Normal
0.2
445
Tumor
0.2
341
Tumor
0.2
571
Tumor
0.1
925
Tumor
0.1
137
Tumor
0.1
423
Tumor
0.1
665
Tumor
0.1
224
Normal
0.1
1028
Normal
0.1
615
Tumor
0.1
125
Tumor
0.1
387
Tumor
0.1
813
Tumor
0.1
818
Normal
0.1
188
Normal
0.1
211
Tumor
0.1
564
Normal
0.1
568
Normal
0.1
916
Normal
0.1
365
Tumor
0.1
918
Normal
0.1
563
Tumor
0.1
421
Tumor
0.1
852
Normal
0.1
487
Tumor
0.1
257
Tumor
0.1
384
Normal
0.1
368
Normal
0.1
513
Tumor
0.1
284
Normal
0.1
446
Normal
0.0
461
Tumor
0.0
558
Normal
0.0
873
Tumor
0.0
574
Normal
0.0
926
Normal
0.0
515
Tumor
0.0
195
Tumor
0.0
618
Normal
0.0
455
Tumor
0.0
434
Normal
0.0
395
Tumor
0.0
171
Tumor
0.0
148
Normal
0.0
627
Tumor
0.0
471
Tumor
0.0
857
Tumor
0.0
451
Tumor
0.0
353
Tumor
0.0
394
Normal
0.0
186
Normal
0.0
695
Tumor
0.0
141
Tumor
0.0
393
Tumor
0.0
824
Normal
0.0
396
Normal
0.0
1041
Tumor
0.0
426
Normal
0.0
858
Normal
0.0
385
Tumor
0.0
1022
Normal
0.0
422
Normal
0.0
923
Tumor
0.0
126
Normal
0.0
172
Normal
0.0
286
Normal
0.0
162
Normal
0.0
616
Normal
0.0
392
Normal
0.0
187
Tumor
0.0
228
Normal
0.0
526
Normal
0.0
124
Normal
0.0
648
Normal
0.0
816
Normal
-0.1
414
Normal
-0.1
462
Normal
-0.1
433
Tumor
-0.1
1026
Normal
-0.1
212
Normal
-0.1
628
Normal
-0.1
466
Normal
-0.1
883
Tumor
-0.1
432
Normal
-0.1
663
Tumor
-0.1
342
Normal
-0.1
191
Tumor
-0.1
223
Tumor
-0.1
823
Tumor
-0.1
924
Normal
-0.1
976
Normal
-0.1
444
Normal
-0.1
1042
Normal
-0.1
922
Normal
-0.1
538
Normal
-0.1
428
Normal
-0.1
938
Normal
-0.1
722
Normal
-0.1
1032
Normal
-0.1
1043
Tumor
-0.1
672
Normal
-0.1
983
Tumor
-0.1
388
Normal
-0.1
516
Normal
-0.1
361
Tumor
-0.1
383
Tumor
-0.1
664
Normal
-0.1
756
Normal
-0.2
524
Normal
-0.2
721
Tumor
-0.2
362
Normal
-0.2
523
Tumor
-0.2
366
Normal
-0.2
114
Normal
-0.2
617
Tumor
-0.2
518
Normal
-0.2
478
Normal
-0.2
1015
Tumor
-0.2
425
Tumor
-0.2
642
Normal
-0.2
376
Normal
-0.2
686
Normal
-0.2
128
Normal
-0.2
636
Normal
-0.2
572
Normal
-0.2
431
Tumor
-0.2
468
Normal
-0.2
1027
Tumor
-0.2
343
Tumor
-0.2
497
Tumor
-0.2
386
Normal
-0.2
778
Normal
-0.2
464
Normal
-0.2
196
Normal
-0.2
743
Tumor
-0.2
135
Tumor
-0.2
864
Normal
-0.2
354
Normal
-0.2
785
Tumor
-0.2
218
Normal
-0.2
662
Normal
-0.2
954
Normal
-0.3
786
Normal
-0.3
716
Normal
-0.3
424
Normal
-0.3
481
Tumor
-0.3
746
Normal
-0.3
214
Normal
-0.3
978
Normal
-0.3
352
Normal
-0.3
534
Normal
-0.3
554
Normal
-0.3
955
Tumor
-0.3
465
Tumor
-0.3
474
Normal
-0.3
881
Tumor
-0.3
456
Normal
-0.3
452
Normal
-0.3
714
Normal
-0.3
727
Tumor
-0.3
861
Tumor
-0.3
222
Normal
-0.3
111
Normal
-0.3
863
Tumor
-0.3
493
Tumor
-0.3
944
Normal
-0.3
514
Normal
-0.3
956
Normal
-0.3
546
Normal
-0.3
915
Tumor
-0.3
874
Normal
-0.3
666
Normal
-0.3
528
Normal
-0.3
448
Normal
-0.4
344
Normal
-0.4
963
Tumor
-0.4
1016
Normal
-0.4
952
Normal
-0.4
742
Normal
-0.4
913
Tumor
-0.4
982
Normal
-0.4
494
Normal
-0.4
723
Tumor
-0.4
696
Normal
-0.4
884
Normal
-0.4
358
Normal
-0.4
868
Normal
-0.4
741
Tumor
-0.4
447
Tumor
-0.4
953
Tumor
-0.4
914
Normal
-0.4
527
Tumor
-0.4
1014
Normal
-0.4
966
Normal
-0.5
536
Normal
-0.5
364
Normal
-0.5
862
Normal
-0.5
416
Normal
-0.5
482
Normal
-0.5
472
Normal
-0.5
484
Normal
-0.5
866
Normal
-0.5
958
Normal
-0.5
498
Normal
-0.5
968
Normal
-0.5
728
Normal
-0.5
483
Tumor
-0.5
415
Tumor
-0.5
488
Normal
-0.6
984
Normal
-0.6
145
Tumor
-0.6
912
Normal
-0.6
964
Normal
-0.6
724
Normal
-0.6
921
Tumor
-0.6
357
Tumor
-0.6
698
Normal
-0.6
697
Tumor
-0.6
744
Normal
-0.6
977
Tumor
-0.6
142
Normal
-0.6
492
Normal
-0.6
738
Normal
-0.6
146
Normal
-0.6
641
Tumor
-0.6
1045
Tumor
-0.6
491
Tumor
-0.6
311
Tumor
-0.7
635
Tumor
-0.7
356
Normal
-0.7
1044
Normal
-0.7
412
Normal
-0.7
867
Tumor
-0.8
911
Tumor
-0.8
363
Tumor
-0.8
877
Tumor
-0.8
138
Normal
-0.9
882
Normal
-0.9
328
Normal
-0.9
1046
Normal
-0.9
981
Tumor
-1.0
878
Normal
-1.0
136
Normal
-1.0
132
Normal
-1.0
297
Tumor
-1.0
327
Tumor
-1.1
313
Tumor
-1.1
277
Tumor
-1.2
312
Normal
-1.5
298
Normal
-1.6
314
Normal
-1.9
332
Normal
-2.8
278
Normal
-3.0
331
Tumor
-3.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
