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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STAMBP is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
38.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
28.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
28.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
22.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
20.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
20.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STAMBP is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.1
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.1
685
Tumor
0.7
567
Tumor
0.7
925
Tumor
0.7
951
Tumor
0.7
1021
Tumor
0.6
527
Tumor
0.6
777
Tumor
0.5
357
Tumor
0.5
953
Tumor
0.5
563
Tumor
0.5
957
Tumor
0.5
517
Tumor
0.4
351
Tumor
0.4
873
Tumor
0.4
473
Tumor
0.4
545
Tumor
0.4
745
Tumor
0.4
425
Tumor
0.3
727
Tumor
0.3
435
Tumor
0.3
755
Tumor
0.3
515
Tumor
0.3
493
Tumor
0.3
1045
Tumor
0.3
415
Tumor
0.3
724
Normal
0.3
967
Tumor
0.3
813
Tumor
0.3
367
Tumor
0.3
955
Tumor
0.3
171
Tumor
0.3
965
Tumor
0.3
964
Normal
0.3
411
Tumor
0.3
192
Normal
0.3
471
Tumor
0.3
952
Normal
0.3
271
Tumor
0.3
535
Tumor
0.3
877
Tumor
0.3
131
Tumor
0.3
355
Tumor
0.3
976
Normal
0.2
147
Tumor
0.2
983
Tumor
0.2
978
Normal
0.2
1013
Tumor
0.2
1042
Normal
0.2
431
Tumor
0.2
743
Tumor
0.2
977
Tumor
0.2
525
Tumor
0.2
863
Tumor
0.2
756
Normal
0.2
427
Tumor
0.2
331
Tumor
0.2
127
Tumor
0.2
363
Tumor
0.2
1031
Tumor
0.2
616
Normal
0.2
746
Normal
0.2
695
Tumor
0.2
213
Tumor
0.2
923
Tumor
0.2
481
Tumor
0.2
944
Normal
0.2
852
Normal
0.2
917
Tumor
0.2
697
Tumor
0.2
553
Tumor
0.2
728
Normal
0.2
958
Normal
0.1
447
Tumor
0.1
867
Tumor
0.1
814
Normal
0.1
1026
Normal
0.1
328
Normal
0.1
815
Tumor
0.1
533
Tumor
0.1
455
Tumor
0.1
1015
Tumor
0.1
882
Normal
0.1
195
Tumor
0.1
824
Normal
0.1
528
Normal
0.1
663
Tumor
0.1
416
Normal
0.1
445
Tumor
0.1
866
Normal
0.1
364
Normal
0.1
284
Normal
0.1
356
Normal
0.1
916
Normal
0.1
818
Normal
0.1
311
Tumor
0.1
514
Normal
0.1
267
Tumor
0.1
474
Normal
0.1
1014
Normal
0.1
874
Normal
0.1
546
Normal
0.1
421
Tumor
0.1
671
Tumor
0.1
884
Normal
0.1
956
Normal
0.1
497
Tumor
0.1
924
Normal
0.1
518
Normal
0.1
744
Normal
0.1
966
Normal
0.1
982
Normal
0.1
448
Normal
0.1
482
Normal
0.1
161
Tumor
0.1
227
Tumor
0.1
478
Normal
0.1
617
Tumor
0.1
113
Tumor
0.1
477
Tumor
0.1
968
Normal
0.1
963
Tumor
0.1
984
Normal
0.1
981
Tumor
0.1
463
Tumor
0.1
913
Tumor
0.1
571
Tumor
0.1
211
Tumor
0.1
465
Tumor
0.1
516
Normal
0.1
524
Normal
0.1
1016
Normal
0.1
327
Tumor
0.1
353
Tumor
0.1
537
Tumor
0.1
785
Tumor
0.1
737
Tumor
0.1
232
Normal
0.1
434
Normal
0.1
722
Normal
0.1
472
Normal
0.1
137
Tumor
0.1
436
Normal
0.1
352
Normal
0.1
912
Normal
0.1
868
Normal
0.1
262
Normal
0.1
883
Tumor
0.0
523
Tumor
0.0
462
Normal
0.0
723
Tumor
0.0
786
Normal
0.0
741
Tumor
0.0
778
Normal
0.0
466
Normal
0.0
461
Tumor
0.0
358
Normal
0.0
926
Normal
0.0
1028
Normal
0.0
716
Normal
0.0
138
Normal
0.0
1044
Normal
0.0
214
Normal
0.0
362
Normal
0.0
738
Normal
0.0
444
Normal
0.0
191
Tumor
0.0
922
Normal
0.0
938
Normal
0.0
816
Normal
0.0
858
Normal
0.0
136
Normal
0.0
354
Normal
0.0
342
Normal
0.0
641
Tumor
0.0
918
Normal
0.0
286
Normal
0.0
1046
Normal
0.0
526
Normal
0.0
268
Normal
0.0
536
Normal
0.0
513
Tumor
0.0
468
Normal
0.0
615
Tumor
0.0
146
Normal
0.0
715
Tumor
0.0
558
Normal
0.0
285
Tumor
0.0
312
Normal
0.0
212
Normal
0.0
568
Normal
0.0
432
Normal
0.0
714
Normal
0.0
534
Normal
0.0
341
Tumor
0.0
451
Tumor
0.0
387
Tumor
0.0
464
Normal
0.0
443
Tumor
0.0
412
Normal
0.0
862
Normal
0.0
278
Normal
0.0
224
Normal
0.0
132
Normal
0.0
742
Normal
0.0
635
Tumor
0.0
365
Tumor
0.0
881
Tumor
0.0
564
Normal
0.0
141
Tumor
0.0
456
Normal
0.0
424
Normal
0.0
125
Tumor
0.0
467
Tumor
0.0
1022
Normal
0.0
492
Normal
0.0
112
Tumor
0.0
135
Tumor
0.0
1025
Tumor
0.0
713
Tumor
0.0
954
Normal
0.0
491
Tumor
0.0
943
Tumor
0.0
817
Tumor
0.0
1032
Normal
0.0
188
Normal
0.0
272
Normal
0.0
484
Normal
0.0
664
Normal
-0.1
823
Tumor
-0.1
914
Normal
-0.1
162
Normal
-0.1
428
Normal
-0.1
574
Normal
-0.1
665
Tumor
-0.1
361
Tumor
-0.1
297
Tumor
-0.1
344
Normal
-0.1
483
Tumor
-0.1
647
Tumor
-0.1
857
Tumor
-0.1
666
Normal
-0.1
538
Normal
-0.1
414
Normal
-0.1
878
Normal
-0.1
446
Normal
-0.1
196
Normal
-0.1
494
Normal
-0.1
422
Normal
-0.1
413
Tumor
-0.1
366
Normal
-0.1
228
Normal
-0.1
376
Normal
-0.1
915
Tumor
-0.1
218
Normal
-0.1
686
Normal
-0.1
642
Normal
-0.1
386
Normal
-0.1
488
Normal
-0.1
498
Normal
-0.1
142
Normal
-0.1
864
Normal
-0.1
975
Tumor
-0.1
423
Tumor
-0.1
393
Tumor
-0.1
186
Normal
-0.1
433
Tumor
-0.1
1043
Tumor
-0.1
636
Normal
-0.1
1041
Tumor
-0.1
554
Normal
-0.1
661
Tumor
-0.1
426
Normal
-0.1
185
Tumor
-0.1
662
Normal
-0.1
721
Tumor
-0.1
696
Normal
-0.1
217
Tumor
-0.1
126
Normal
-0.1
452
Normal
-0.1
172
Normal
-0.1
231
Tumor
-0.1
124
Normal
-0.1
277
Tumor
-0.1
861
Tumor
-0.1
672
Normal
-0.1
368
Normal
-0.1
698
Normal
-0.1
258
Normal
-0.2
257
Tumor
-0.2
648
Normal
-0.2
394
Normal
-0.2
148
Normal
-0.2
298
Normal
-0.2
572
Normal
-0.2
911
Tumor
-0.2
222
Normal
-0.2
392
Normal
-0.2
332
Normal
-0.2
573
Tumor
-0.2
618
Normal
-0.2
921
Tumor
-0.2
145
Tumor
-0.2
388
Normal
-0.2
628
Normal
-0.2
391
Tumor
-0.2
283
Tumor
-0.2
375
Tumor
-0.2
384
Normal
-0.2
385
Tumor
-0.2
395
Tumor
-0.2
627
Tumor
-0.2
383
Tumor
-0.2
396
Normal
-0.2
128
Normal
-0.3
313
Tumor
-0.3
223
Tumor
-0.3
111
Normal
-0.3
314
Normal
-0.3
114
Normal
-0.3
937
Tumor
-0.3
221
Tumor
-0.3
261
Tumor
-0.3
487
Tumor
-0.3
187
Tumor
-0.3
557
Tumor
-0.4
865
Tumor
-0.4
851
Tumor
-0.5
123
Tumor
-0.5
343
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
