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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VAMP7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
93.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
86.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
77.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
74.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
72.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
65.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
57.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
56.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
54.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
52.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
52.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
52.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
50.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
49.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
49.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
49.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
49.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
48.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
46.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
46.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
45.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
45.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
44.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
41.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
41.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
41.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
40.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
39.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
39.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
39.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
37.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
37.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
37.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
37.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
36.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
36.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
36.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
36.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
35.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
35.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
35.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
35.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
35.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
34.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
34.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
34.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
34.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
34.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
33.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
33.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
33.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
33.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
33.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
33.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
32.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
32.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
32.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
32.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
32.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
31.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
31.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
31.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
30.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
30.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
30.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
29.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
29.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
29.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
29.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
28.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
28.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
27.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
27.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
26.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
26.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
25.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
25.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
25.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
25.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
25.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
25.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
24.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
24.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
24.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
24.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
23.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
22.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
22.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
22.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
22.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
22.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
21.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
21.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
20.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
20.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
20.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
20.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
19.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
19.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
18.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
18.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
17.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
16.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.0
Number of samples
231
Samples
Sample
Description
TPM
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
491
Tumor
1.5
573
Tumor
1.3
863
Tumor
1.2
627
Tumor
1.1
527
Tumor
1.1
777
Tumor
1.0
171
Tumor
1.0
343
Tumor
0.9
125
Tumor
0.8
923
Tumor
0.7
483
Tumor
0.7
451
Tumor
0.7
685
Tumor
0.7
745
Tumor
0.7
231
Tumor
0.7
925
Tumor
0.7
557
Tumor
0.6
257
Tumor
0.6
137
Tumor
0.6
261
Tumor
0.6
963
Tumor
0.5
1025
Tumor
0.5
443
Tumor
0.5
487
Tumor
0.5
433
Tumor
0.5
977
Tumor
0.4
755
Tumor
0.4
724
Normal
0.4
563
Tumor
0.4
147
Tumor
0.4
1013
Tumor
0.4
187
Tumor
0.4
353
Tumor
0.4
351
Tumor
0.4
721
Tumor
0.3
823
Tumor
0.3
513
Tumor
0.3
471
Tumor
0.3
697
Tumor
0.3
211
Tumor
0.3
411
Tumor
0.3
415
Tumor
0.3
113
Tumor
0.3
665
Tumor
0.3
123
Tumor
0.3
283
Tumor
0.3
313
Tumor
0.3
393
Tumor
0.3
461
Tumor
0.3
497
Tumor
0.3
425
Tumor
0.3
965
Tumor
0.3
435
Tumor
0.3
423
Tumor
0.3
861
Tumor
0.2
857
Tumor
0.2
481
Tumor
0.2
421
Tumor
0.2
327
Tumor
0.2
571
Tumor
0.2
913
Tumor
0.2
937
Tumor
0.2
112
Tumor
0.2
493
Tumor
0.2
191
Tumor
0.2
953
Tumor
0.2
873
Tumor
0.1
1027
Tumor
0.1
537
Tumor
0.1
141
Tumor
0.1
728
Normal
0.1
533
Tumor
0.1
185
Tumor
0.1
742
Normal
0.1
375
Tumor
0.1
647
Tumor
0.1
741
Tumor
0.1
957
Tumor
0.1
267
Tumor
0.1
311
Tumor
0.1
554
Normal
0.1
135
Tumor
0.0
824
Normal
0.0
617
Tumor
0.0
227
Tumor
0.0
785
Tumor
0.0
124
Normal
0.0
223
Tumor
0.0
1014
Normal
0.0
467
Tumor
0.0
331
Tumor
0.0
737
Tumor
0.0
917
Tumor
0.0
525
Tumor
0.0
1016
Normal
0.0
635
Tumor
0.0
1015
Tumor
0.0
567
Tumor
0.0
478
Normal
0.0
271
Tumor
0.0
357
Tumor
0.0
328
Normal
0.0
851
Tumor
0.0
172
Normal
0.0
482
Normal
0.0
367
Tumor
0.0
545
Tumor
-0.1
473
Tumor
-0.1
723
Tumor
-0.1
462
Normal
-0.1
778
Normal
-0.1
472
Normal
-0.1
455
Tumor
-0.1
142
Normal
-0.1
914
Normal
-0.1
361
Tumor
-0.1
568
Normal
-0.1
738
Normal
-0.1
494
Normal
-0.1
128
Normal
-0.1
911
Tumor
-0.1
127
Tumor
-0.1
364
Normal
-0.1
546
Normal
-0.1
492
Normal
-0.1
474
Normal
-0.1
431
Tumor
-0.1
744
Normal
-0.1
868
Normal
-0.1
111
Normal
-0.1
352
Normal
-0.1
864
Normal
-0.1
968
Normal
-0.1
354
Normal
-0.1
528
Normal
-0.1
284
Normal
-0.1
217
Tumor
-0.1
523
Tumor
-0.1
786
Normal
-0.1
518
Normal
-0.1
477
Tumor
-0.1
943
Tumor
-0.1
922
Normal
-0.1
162
Normal
-0.1
484
Normal
-0.1
436
Normal
-0.1
672
Normal
-0.2
515
Tumor
-0.2
686
Normal
-0.2
722
Normal
-0.2
746
Normal
-0.2
615
Tumor
-0.2
356
Normal
-0.2
148
Normal
-0.2
883
Tumor
-0.2
488
Normal
-0.2
1021
Tumor
-0.2
344
Normal
-0.2
383
Tumor
-0.2
878
Normal
-0.2
228
Normal
-0.2
924
Normal
-0.2
514
Normal
-0.2
358
Normal
-0.2
642
Normal
-0.2
434
Normal
-0.2
186
Normal
-0.2
572
Normal
-0.2
918
Normal
-0.2
616
Normal
-0.2
394
Normal
-0.2
912
Normal
-0.2
212
Normal
-0.2
818
Normal
-0.2
756
Normal
-0.2
862
Normal
-0.2
312
Normal
-0.2
713
Tumor
-0.2
298
Normal
-0.2
1026
Normal
-0.2
355
Tumor
-0.2
666
Normal
-0.2
222
Normal
-0.2
944
Normal
-0.2
422
Normal
-0.2
384
Normal
-0.2
884
Normal
-0.2
114
Normal
-0.2
258
Normal
-0.2
916
Normal
-0.2
447
Tumor
-0.2
466
Normal
-0.2
362
Normal
-0.2
1044
Normal
-0.2
715
Tumor
-0.2
966
Normal
-0.3
882
Normal
-0.3
618
Normal
-0.3
456
Normal
-0.3
954
Normal
-0.3
1022
Normal
-0.3
432
Normal
-0.3
952
Normal
-0.3
426
Normal
-0.3
395
Tumor
-0.3
385
Tumor
-0.3
314
Normal
-0.3
816
Normal
-0.3
564
Normal
-0.3
1028
Normal
-0.3
865
Tumor
-0.3
448
Normal
-0.3
978
Normal
-0.3
286
Normal
-0.3
628
Normal
-0.3
858
Normal
-0.3
926
Normal
-0.3
536
Normal
-0.3
278
Normal
-0.3
874
Normal
-0.3
188
Normal
-0.3
636
Normal
-0.3
136
Normal
-0.3
126
Normal
-0.3
1045
Tumor
-0.3
132
Normal
-0.3
444
Normal
-0.3
955
Tumor
-0.3
813
Tumor
-0.3
881
Tumor
-0.3
524
Normal
-0.3
526
Normal
-0.3
396
Normal
-0.3
218
Normal
-0.3
553
Tumor
-0.3
964
Normal
-0.3
414
Normal
-0.3
498
Normal
-0.3
534
Normal
-0.3
332
Normal
-0.3
671
Tumor
-0.3
268
Normal
-0.3
424
Normal
-0.3
698
Normal
-0.3
161
Tumor
-0.3
976
Normal
-0.3
224
Normal
-0.3
538
Normal
-0.3
464
Normal
-0.3
412
Normal
-0.3
663
Tumor
-0.3
938
Normal
-0.3
1043
Tumor
-0.3
285
Tumor
-0.3
131
Tumor
-0.3
866
Normal
-0.3
214
Normal
-0.3
852
Normal
-0.3
232
Normal
-0.3
664
Normal
-0.3
951
Tumor
-0.3
213
Tumor
-0.3
648
Normal
-0.3
1032
Normal
-0.3
1042
Normal
-0.4
958
Normal
-0.4
452
Normal
-0.4
956
Normal
-0.4
428
Normal
-0.4
535
Tumor
-0.4
297
Tumor
-0.4
662
Normal
-0.4
363
Tumor
-0.4
558
Normal
-0.4
388
Normal
-0.4
716
Normal
-0.4
695
Tumor
-0.4
341
Tumor
-0.4
392
Normal
-0.4
814
Normal
-0.4
272
Normal
-0.4
376
Normal
-0.4
696
Normal
-0.4
1046
Normal
-0.4
967
Tumor
-0.4
262
Normal
-0.4
342
Normal
-0.4
982
Normal
-0.4
984
Normal
-0.4
468
Normal
-0.4
661
Tumor
-0.4
446
Normal
-0.4
387
Tumor
-0.4
416
Normal
-0.4
574
Normal
-0.4
277
Tumor
-0.4
983
Tumor
-0.4
427
Tumor
-0.4
221
Tumor
-0.4
195
Tumor
-0.5
867
Tumor
-0.5
714
Normal
-0.5
192
Normal
-0.5
196
Normal
-0.5
743
Tumor
-0.5
915
Tumor
-0.5
368
Normal
-0.5
146
Normal
-0.5
366
Normal
-0.5
386
Normal
-0.5
727
Tumor
-0.5
463
Tumor
-0.5
365
Tumor
-0.5
138
Normal
-0.5
921
Tumor
-0.6
1031
Tumor
-0.6
1041
Tumor
-0.6
516
Normal
-0.6
145
Tumor
-0.6
817
Tumor
-0.6
445
Tumor
-0.6
391
Tumor
-0.6
465
Tumor
-0.6
975
Tumor
-0.6
641
Tumor
-0.7
981
Tumor
-0.8
413
Tumor
-0.8
517
Tumor
-0.9
815
Tumor
-0.9
877
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
