We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZNFX1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
30.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
27.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZNFX1 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.0
Number of samples
231
Samples
Sample
Description
TPM
DO23513
0 years, male, NA, stage:3, alive, 1200 days
27.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
26.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
3.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
113
Tumor
0.7
557
Tumor
0.7
951
Tumor
0.6
525
Tumor
0.6
533
Tumor
0.6
817
Tumor
0.6
851
Tumor
0.5
283
Tumor
0.5
1013
Tumor
0.5
327
Tumor
0.5
745
Tumor
0.5
1015
Tumor
0.5
191
Tumor
0.5
724
Normal
0.5
467
Tumor
0.5
395
Tumor
0.5
145
Tumor
0.5
211
Tumor
0.5
217
Tumor
0.4
861
Tumor
0.4
427
Tumor
0.4
383
Tumor
0.4
477
Tumor
0.4
981
Tumor
0.4
1045
Tumor
0.4
536
Normal
0.4
857
Tumor
0.4
823
Tumor
0.3
483
Tumor
0.3
313
Tumor
0.3
937
Tumor
0.3
535
Tumor
0.3
567
Tumor
0.3
573
Tumor
0.3
343
Tumor
0.3
527
Tumor
0.3
375
Tumor
0.3
966
Normal
0.3
451
Tumor
0.3
213
Tumor
0.3
141
Tumor
0.3
978
Normal
0.3
883
Tumor
0.3
925
Tumor
0.3
814
Normal
0.3
137
Tumor
0.3
262
Normal
0.3
127
Tumor
0.3
135
Tumor
0.3
1025
Tumor
0.3
1043
Tumor
0.3
396
Normal
0.2
218
Normal
0.2
513
Tumor
0.2
697
Tumor
0.2
422
Normal
0.2
955
Tumor
0.2
471
Tumor
0.2
917
Tumor
0.2
187
Tumor
0.2
721
Tumor
0.2
426
Normal
0.2
975
Tumor
0.2
278
Normal
0.2
1044
Normal
0.2
311
Tumor
0.2
257
Tumor
0.2
126
Normal
0.2
493
Tumor
0.2
865
Tumor
0.2
125
Tumor
0.2
353
Tumor
0.2
123
Tumor
0.2
124
Normal
0.2
387
Tumor
0.2
428
Normal
0.2
415
Tumor
0.2
416
Normal
0.2
977
Tumor
0.2
956
Normal
0.2
1021
Tumor
0.2
537
Tumor
0.2
492
Normal
0.2
112
Tumor
0.2
957
Tumor
0.2
268
Normal
0.2
128
Normal
0.2
627
Tumor
0.2
232
Normal
0.2
188
Normal
0.2
563
Tumor
0.2
497
Tumor
0.2
515
Tumor
0.2
911
Tumor
0.2
414
Normal
0.2
498
Normal
0.1
195
Tumor
0.1
393
Tumor
0.1
138
Normal
0.1
272
Normal
0.1
661
Tumor
0.1
1041
Tumor
0.1
185
Tumor
0.1
332
Normal
0.1
421
Tumor
0.1
474
Normal
0.1
258
Normal
0.1
424
Normal
0.1
231
Tumor
0.1
284
Normal
0.1
558
Normal
0.1
545
Tumor
0.1
196
Normal
0.1
913
Tumor
0.1
221
Tumor
0.1
465
Tumor
0.1
491
Tumor
0.1
494
Normal
0.1
142
Normal
0.1
433
Tumor
0.1
1028
Normal
0.1
1027
Tumor
0.1
963
Tumor
0.1
411
Tumor
0.1
355
Tumor
0.1
434
Normal
0.1
777
Tumor
0.1
461
Tumor
0.1
722
Normal
0.1
261
Tumor
0.1
114
Normal
0.1
665
Tumor
0.1
568
Normal
0.1
435
Tumor
0.1
171
Tumor
0.1
524
Normal
0.1
448
Normal
0.1
663
Tumor
0.1
431
Tumor
0.1
914
Normal
0.1
455
Tumor
0.1
391
Tumor
0.1
223
Tumor
0.1
553
Tumor
0.1
554
Normal
0.1
357
Tumor
0.1
386
Normal
0.1
192
Normal
0.1
964
Normal
0.1
314
Normal
0.1
136
Normal
0.1
111
Normal
0.1
384
Normal
0.1
224
Normal
0.1
698
Normal
0.1
1046
Normal
0.1
915
Tumor
0.1
446
Normal
0.1
662
Normal
0.1
944
Normal
0.1
366
Normal
0.1
884
Normal
0.1
755
Tumor
0.1
362
Normal
0.1
528
Normal
0.1
1031
Tumor
0.1
716
Normal
0.1
873
Tumor
0.1
696
Normal
0.1
982
Normal
0.1
445
Tumor
0.0
392
Normal
0.0
161
Tumor
0.0
447
Tumor
0.0
132
Normal
0.0
365
Tumor
0.0
147
Tumor
0.0
1014
Normal
0.0
297
Tumor
0.0
953
Tumor
0.0
574
Normal
0.0
186
Normal
0.0
286
Normal
0.0
685
Tumor
0.0
478
Normal
0.0
368
Normal
0.0
648
Normal
0.0
212
Normal
0.0
412
Normal
0.0
858
Normal
0.0
952
Normal
0.0
916
Normal
0.0
943
Tumor
0.0
214
Normal
0.0
1042
Normal
0.0
443
Tumor
0.0
714
Normal
0.0
514
Normal
0.0
572
Normal
0.0
918
Normal
0.0
723
Tumor
0.0
666
Normal
0.0
394
Normal
0.0
363
Tumor
0.0
298
Normal
0.0
686
Normal
0.0
852
Normal
0.0
436
Normal
0.0
526
Normal
0.0
628
Normal
0.0
352
Normal
N/A
1016
Normal
0.0
222
Normal
0.0
881
Tumor
0.0
464
Normal
0.0
615
Tumor
0.0
432
Normal
0.0
388
Normal
0.0
647
Tumor
0.0
344
Normal
0.0
785
Tumor
0.0
385
Tumor
0.0
444
Normal
0.0
456
Normal
0.0
423
Tumor
0.0
958
Normal
0.0
954
Normal
0.0
1032
Normal
0.0
672
Normal
0.0
976
Normal
0.0
367
Tumor
0.0
468
Normal
0.0
341
Tumor
0.0
728
Normal
0.0
671
Tumor
0.0
162
Normal
0.0
538
Normal
0.0
356
Normal
0.0
312
Normal
0.0
1026
Normal
0.0
984
Normal
0.0
664
Normal
0.0
452
Normal
0.0
938
Normal
0.0
146
Normal
0.0
172
Normal
0.0
1022
Normal
0.0
361
Tumor
0.0
228
Normal
0.0
466
Normal
-0.1
926
Normal
-0.1
267
Tumor
-0.1
571
Tumor
-0.1
518
Normal
-0.1
364
Normal
-0.1
738
Normal
-0.1
484
Normal
-0.1
488
Normal
-0.1
965
Tumor
-0.1
463
Tumor
-0.1
131
Tumor
-0.1
534
Normal
-0.1
473
Tumor
-0.1
912
Normal
-0.1
983
Tumor
-0.1
874
Normal
-0.1
816
Normal
-0.1
564
Normal
-0.1
756
Normal
-0.1
786
Normal
-0.1
636
Normal
-0.1
742
Normal
-0.1
472
Normal
-0.1
715
Tumor
-0.1
922
Normal
-0.1
462
Normal
-0.1
968
Normal
-0.1
376
Normal
-0.1
425
Tumor
-0.1
516
Normal
-0.1
778
Normal
-0.1
617
Tumor
-0.1
866
Normal
-0.1
328
Normal
-0.1
815
Tumor
-0.1
813
Tumor
-0.1
148
Normal
-0.1
331
Tumor
-0.1
713
Tumor
-0.1
546
Normal
-0.1
868
Normal
-0.1
863
Tumor
-0.1
924
Normal
-0.1
862
Normal
-0.1
616
Normal
-0.2
358
Normal
-0.2
878
Normal
-0.2
741
Tumor
-0.2
882
Normal
-0.2
923
Tumor
-0.2
867
Tumor
-0.2
354
Normal
-0.2
864
Normal
-0.2
746
Normal
-0.2
967
Tumor
-0.2
824
Normal
-0.2
342
Normal
-0.2
482
Normal
-0.2
641
Tumor
-0.2
277
Tumor
-0.2
695
Tumor
-0.2
271
Tumor
-0.2
487
Tumor
-0.2
642
Normal
-0.2
227
Tumor
-0.2
744
Normal
-0.2
618
Normal
-0.2
818
Normal
-0.2
481
Tumor
-0.2
523
Tumor
-0.2
727
Tumor
-0.3
413
Tumor
-0.3
285
Tumor
-0.3
635
Tumor
-0.3
921
Tumor
-0.3
517
Tumor
-0.3
877
Tumor
-0.4
351
Tumor
-0.4
737
Tumor
-0.5
743
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
