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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRSF6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
50.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
49.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
47.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
43.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
43.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
41.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
40.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
39.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
39.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
38.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
38.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
36.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
36.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
34.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
34.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
33.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
33.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
33.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
33.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
32.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
32.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
32.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
32.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
31.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
31.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
31.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
31.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
31.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
31.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
30.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
30.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
30.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
30.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
29.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
29.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
28.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
28.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
27.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
27.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
27.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
27.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
26.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
26.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
26.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
26.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
26.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
25.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
25.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
25.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
25.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
25.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
25.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
24.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
24.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
24.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
24.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
23.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
23.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
23.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
23.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
22.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
22.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
22.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
22.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
22.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
21.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
21.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
21.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
21.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
20.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
20.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
19.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
18.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
17.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
16.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
16.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
16.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
16.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
15.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRSF6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
62.1
Number of samples
231
Samples
Sample
Description
TPM
DO45189
0 years, female, NA, stage:2, alive, 1200 days
170.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
168.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
129.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
123.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
114.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
112.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
111.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
107.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
104.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
103.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
101.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
98.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
98.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
98.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
96.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
96.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
95.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
94.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
93.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
93.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
91.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
90.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
90.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
90.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
89.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
89.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
89.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
89.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
88.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
88.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
87.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
87.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
87.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
87.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
86.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
84.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
82.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
81.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
80.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
80.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
79.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
79.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
78.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
78.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
78.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
78.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
78.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
78.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
78.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
77.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
76.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
76.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
75.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
75.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
74.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
73.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
73.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
73.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
73.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
72.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
72.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
71.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
71.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
71.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
70.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
70.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
70.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
69.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
69.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
69.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
68.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
68.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
68.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
68.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
68.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
68.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
67.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
67.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
67.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
67.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
67.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
66.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
66.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
66.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
66.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
66.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
66.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
65.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
65.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
65.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
65.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
65.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
65.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
64.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
64.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
63.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
63.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
63.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
63.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
63.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
63.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
63.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
63.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
62.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
62.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
62.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
61.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
61.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
61.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
61.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
61.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
61.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
61.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
61.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
60.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
60.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
60.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
60.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
59.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
59.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
59.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
59.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
59.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
58.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
58.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
57.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
57.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
57.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
56.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
56.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
56.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
56.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
56.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
55.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
55.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
55.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
55.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
54.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
54.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
54.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
54.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
53.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
53.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
53.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
53.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
53.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
53.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
52.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
52.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
52.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
51.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
50.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
50.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
50.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
50.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
50.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
49.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
49.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
49.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
49.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
49.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
48.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
48.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
48.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
48.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
47.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
47.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
47.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
46.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
46.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
46.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
46.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
46.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
46.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
46.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
45.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
45.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
45.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
45.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
45.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
44.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
44.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
44.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
44.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
43.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
43.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
43.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
43.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
43.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
43.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
42.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
42.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
42.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
42.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
42.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
41.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
41.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
41.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
40.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
40.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
39.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
39.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
38.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
38.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
38.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
38.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
37.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
37.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
37.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
36.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
36.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
35.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
35.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
34.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
34.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
34.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
34.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
34.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
32.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
30.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
30.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
28.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
26.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
23.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
23.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
497
Tumor
1.1
131
Tumor
1.1
331
Tumor
0.9
743
Tumor
0.9
967
Tumor
0.9
951
Tumor
0.8
473
Tumor
0.7
523
Tumor
0.7
533
Tumor
0.7
351
Tumor
0.7
965
Tumor
0.7
815
Tumor
0.7
537
Tumor
0.6
977
Tumor
0.6
211
Tumor
0.6
411
Tumor
0.6
367
Tumor
0.6
817
Tumor
0.6
957
Tumor
0.6
313
Tumor
0.6
493
Tumor
0.6
355
Tumor
0.6
661
Tumor
0.6
1021
Tumor
0.6
413
Tumor
0.5
527
Tumor
0.5
285
Tumor
0.5
545
Tumor
0.5
865
Tumor
0.5
112
Tumor
0.5
525
Tumor
0.5
427
Tumor
0.5
277
Tumor
0.5
1031
Tumor
0.5
357
Tumor
0.5
161
Tumor
0.5
937
Tumor
0.5
535
Tumor
0.5
635
Tumor
0.5
463
Tumor
0.5
567
Tumor
0.5
881
Tumor
0.5
943
Tumor
0.5
983
Tumor
0.5
1041
Tumor
0.5
483
Tumor
0.5
1013
Tumor
0.5
425
Tumor
0.4
443
Tumor
0.4
135
Tumor
0.4
727
Tumor
0.4
557
Tumor
0.4
487
Tumor
0.4
431
Tumor
0.4
873
Tumor
0.4
695
Tumor
0.4
385
Tumor
0.4
921
Tumor
0.4
221
Tumor
0.4
477
Tumor
0.4
1025
Tumor
0.4
571
Tumor
0.4
975
Tumor
0.4
271
Tumor
0.4
387
Tumor
0.4
665
Tumor
0.4
517
Tumor
0.4
923
Tumor
0.3
467
Tumor
0.3
777
Tumor
0.3
663
Tumor
0.3
883
Tumor
0.3
963
Tumor
0.3
123
Tumor
0.3
171
Tumor
0.3
737
Tumor
0.3
267
Tumor
0.3
671
Tumor
0.3
435
Tumor
0.3
953
Tumor
0.3
297
Tumor
0.3
647
Tumor
0.3
877
Tumor
0.3
785
Tumor
0.3
445
Tumor
0.3
471
Tumor
0.3
553
Tumor
0.3
447
Tumor
0.3
1015
Tumor
0.2
823
Tumor
0.2
383
Tumor
0.2
715
Tumor
0.2
641
Tumor
0.2
433
Tumor
0.2
191
Tumor
0.2
913
Tumor
0.2
925
Tumor
0.2
513
Tumor
0.2
231
Tumor
0.2
563
Tumor
0.2
375
Tumor
0.2
814
Normal
0.2
341
Tumor
0.2
911
Tumor
0.2
283
Tumor
0.2
141
Tumor
0.2
451
Tumor
0.2
185
Tumor
0.2
455
Tumor
0.2
461
Tumor
0.1
213
Tumor
0.1
217
Tumor
0.1
955
Tumor
0.1
515
Tumor
0.1
227
Tumor
0.1
857
Tumor
0.1
755
Tumor
0.1
415
Tumor
0.1
685
Tumor
0.1
491
Tumor
0.1
915
Tumor
0.1
554
Normal
0.1
465
Tumor
0.1
363
Tumor
0.1
492
Normal
0.1
867
Tumor
0.1
813
Tumor
0.1
137
Tumor
0.1
724
Normal
0.1
851
Tumor
0.1
423
Tumor
0.1
361
Tumor
0.0
534
Normal
0.0
261
Tumor
0.0
863
Tumor
0.0
697
Tumor
0.0
484
Normal
0.0
1014
Normal
0.0
524
Normal
0.0
147
Tumor
0.0
127
Tumor
0.0
368
Normal
0.0
861
Tumor
0.0
536
Normal
0.0
1045
Tumor
0.0
922
Normal
0.0
573
Tumor
0.0
721
Tumor
0.0
966
Normal
0.0
664
Normal
0.0
666
Normal
0.0
223
Tumor
0.0
488
Normal
0.0
958
Normal
0.0
395
Tumor
0.0
412
Normal
0.0
343
Tumor
0.0
421
Tumor
0.0
187
Tumor
0.0
878
Normal
0.0
917
Tumor
0.0
327
Tumor
0.0
145
Tumor
0.0
1027
Tumor
0.0
195
Tumor
-0.1
546
Normal
-0.1
212
Normal
-0.1
954
Normal
-0.1
528
Normal
-0.1
944
Normal
-0.1
538
Normal
-0.1
391
Tumor
-0.1
1043
Tumor
-0.1
615
Tumor
-0.1
568
Normal
-0.1
481
Tumor
-0.1
448
Normal
-0.1
984
Normal
-0.1
1028
Normal
-0.1
824
Normal
-0.1
498
Normal
-0.1
648
Normal
-0.1
393
Tumor
-0.1
662
Normal
-0.1
916
Normal
-0.1
142
Normal
-0.1
938
Normal
-0.1
478
Normal
-0.1
778
Normal
-0.1
456
Normal
-0.1
516
Normal
-0.1
518
Normal
-0.1
365
Tumor
-0.1
356
Normal
-0.1
1032
Normal
-0.1
968
Normal
-0.1
218
Normal
-0.1
434
Normal
-0.1
924
Normal
-0.1
257
Tumor
-0.1
1026
Normal
-0.1
564
Normal
-0.1
852
Normal
-0.1
113
Tumor
-0.1
514
Normal
-0.1
376
Normal
-0.1
672
Normal
-0.1
858
Normal
-0.1
978
Normal
-0.1
558
Normal
-0.1
918
Normal
-0.1
572
Normal
-0.1
982
Normal
-0.1
468
Normal
-0.1
818
Normal
-0.1
696
Normal
-0.1
756
Normal
-0.2
228
Normal
-0.2
745
Tumor
-0.2
981
Tumor
-0.2
882
Normal
-0.2
866
Normal
-0.2
738
Normal
-0.2
298
Normal
-0.2
728
Normal
-0.2
472
Normal
-0.2
464
Normal
-0.2
636
Normal
-0.2
952
Normal
-0.2
474
Normal
-0.2
314
Normal
-0.2
912
Normal
-0.2
353
Tumor
-0.2
332
Normal
-0.2
366
Normal
-0.2
617
Tumor
-0.2
344
Normal
-0.2
452
Normal
-0.2
186
Normal
-0.2
746
Normal
-0.2
686
Normal
-0.2
1016
Normal
-0.2
466
Normal
-0.2
222
Normal
-0.2
384
Normal
-0.2
342
Normal
-0.2
956
Normal
-0.2
494
Normal
-0.2
432
Normal
-0.2
268
Normal
-0.2
188
Normal
-0.2
874
Normal
-0.2
723
Tumor
-0.2
136
Normal
-0.2
627
Tumor
-0.2
964
Normal
-0.2
416
Normal
-0.2
526
Normal
-0.2
744
Normal
-0.2
352
Normal
-0.2
714
Normal
-0.2
364
Normal
-0.2
713
Tumor
-0.2
1022
Normal
-0.2
362
Normal
-0.2
482
Normal
-0.2
124
Normal
-0.2
132
Normal
-0.2
278
Normal
-0.2
162
Normal
-0.2
262
Normal
-0.2
698
Normal
-0.2
392
Normal
-0.2
574
Normal
-0.2
462
Normal
-0.2
816
Normal
-0.3
114
Normal
-0.3
864
Normal
-0.3
146
Normal
-0.3
328
Normal
-0.3
868
Normal
-0.3
1044
Normal
-0.3
716
Normal
-0.3
926
Normal
-0.3
976
Normal
-0.3
426
Normal
-0.3
786
Normal
-0.3
214
Normal
-0.3
422
Normal
-0.3
148
Normal
-0.3
436
Normal
-0.3
446
Normal
-0.3
232
Normal
-0.3
741
Tumor
-0.3
138
Normal
-0.3
358
Normal
-0.3
386
Normal
-0.3
311
Tumor
-0.3
1042
Normal
-0.3
414
Normal
-0.3
616
Normal
-0.3
1046
Normal
-0.3
111
Normal
-0.3
394
Normal
-0.3
125
Tumor
-0.3
128
Normal
-0.3
742
Normal
-0.3
312
Normal
-0.3
286
Normal
-0.3
172
Normal
-0.3
196
Normal
-0.3
396
Normal
-0.3
618
Normal
-0.3
354
Normal
-0.3
258
Normal
-0.3
722
Normal
-0.4
628
Normal
-0.4
272
Normal
-0.4
284
Normal
-0.4
862
Normal
-0.4
388
Normal
-0.4
444
Normal
-0.4
424
Normal
-0.4
224
Normal
-0.4
428
Normal
-0.4
642
Normal
-0.5
192
Normal
-0.5
126
Normal
-0.5
914
Normal
-0.5
884
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
