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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC12A4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
64.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
35.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
23.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC12A4 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.1
Number of samples
231
Samples
Sample
Description
TPM
DO45305
0 years, male, NA, stage:4, alive, 300 days
29.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
635
Tumor
1.1
395
Tumor
1.1
387
Tumor
0.9
425
Tumor
0.8
455
Tumor
0.7
863
Tumor
0.6
491
Tumor
0.6
435
Tumor
0.5
141
Tumor
0.5
421
Tumor
0.5
311
Tumor
0.5
187
Tumor
0.5
413
Tumor
0.4
327
Tumor
0.4
535
Tumor
0.4
536
Normal
0.4
921
Tumor
0.4
1045
Tumor
0.4
123
Tumor
0.4
852
Normal
0.4
261
Tumor
0.4
313
Tumor
0.4
367
Tumor
0.4
916
Normal
0.4
137
Tumor
0.4
191
Tumor
0.3
231
Tumor
0.3
135
Tumor
0.3
257
Tumor
0.3
865
Tumor
0.3
161
Tumor
0.3
671
Tumor
0.3
365
Tumor
0.3
145
Tumor
0.3
422
Normal
0.3
917
Tumor
0.3
925
Tumor
0.3
363
Tumor
0.3
355
Tumor
0.3
517
Tumor
0.2
741
Tumor
0.2
1042
Normal
0.2
685
Tumor
0.2
563
Tumor
0.2
697
Tumor
0.2
873
Tumor
0.2
268
Normal
0.2
617
Tumor
0.2
467
Tumor
0.2
284
Normal
0.2
492
Normal
0.2
212
Normal
0.2
913
Tumor
0.2
728
Normal
0.2
312
Normal
0.2
113
Tumor
0.2
538
Normal
0.2
777
Tumor
0.2
147
Tumor
0.2
557
Tumor
0.2
477
Tumor
0.2
545
Tumor
0.2
498
Normal
0.2
978
Normal
0.2
434
Normal
0.2
361
Tumor
0.2
443
Tumor
0.2
665
Tumor
0.2
433
Tumor
0.2
444
Normal
0.2
224
Normal
0.2
943
Tumor
0.2
713
Tumor
0.2
297
Tumor
0.2
362
Normal
0.1
188
Normal
0.1
737
Tumor
0.1
474
Normal
0.1
981
Tumor
0.1
375
Tumor
0.1
1028
Normal
0.1
471
Tumor
0.1
662
Normal
0.1
874
Normal
0.1
727
Tumor
0.1
1013
Tumor
0.1
451
Tumor
0.1
192
Normal
0.1
951
Tumor
0.1
328
Normal
0.1
558
Normal
0.1
851
Tumor
0.1
463
Tumor
0.1
436
Normal
0.1
136
Normal
0.1
466
Normal
0.1
721
Tumor
0.1
923
Tumor
0.1
424
Normal
0.1
1016
Normal
0.1
283
Tumor
0.1
864
Normal
0.1
722
Normal
0.1
171
Tumor
0.1
195
Tumor
0.1
785
Tumor
0.1
755
Tumor
0.1
823
Tumor
0.1
877
Tumor
0.1
368
Normal
0.1
185
Tumor
0.1
554
Normal
0.1
353
Tumor
0.1
975
Tumor
0.0
817
Tumor
0.0
627
Tumor
0.0
456
Normal
0.0
213
Tumor
0.0
918
Normal
0.0
473
Tumor
0.0
724
Normal
0.0
478
Normal
0.0
572
Normal
0.0
223
Tumor
0.0
641
Tumor
0.0
977
Tumor
0.0
343
Tumor
0.0
615
Tumor
0.0
138
Normal
0.0
648
Normal
0.0
571
Tumor
0.0
861
Tumor
0.0
228
Normal
0.0
428
Normal
0.0
814
Normal
0.0
286
Normal
0.0
446
Normal
0.0
272
Normal
0.0
432
Normal
0.0
881
Tumor
0.0
148
Normal
0.0
142
Normal
0.0
672
Normal
0.0
445
Tumor
0.0
277
Tumor
0.0
427
Tumor
0.0
976
Normal
0.0
525
Tumor
0.0
533
Tumor
0.0
146
Normal
0.0
464
Normal
0.0
468
Normal
0.0
616
Normal
0.0
526
Normal
0.0
553
Tumor
0.0
574
Normal
0.0
356
Normal
0.0
384
Normal
0.0
742
Normal
0.0
172
Normal
0.0
696
Normal
0.0
546
Normal
0.0
423
Tumor
0.0
1021
Tumor
0.0
1015
Tumor
0.0
217
Tumor
0.0
452
Normal
0.0
494
Normal
0.0
715
Tumor
0.0
911
Tumor
0.0
211
Tumor
0.0
564
Normal
0.0
483
Tumor
-0.1
743
Tumor
-0.1
262
Normal
-0.1
232
Normal
-0.1
386
Normal
-0.1
383
Tumor
-0.1
1041
Tumor
-0.1
527
Tumor
-0.1
186
Normal
-0.1
278
Normal
-0.1
984
Normal
-0.1
857
Tumor
-0.1
944
Normal
-0.1
414
Normal
-0.1
415
Tumor
-0.1
868
Normal
-0.1
447
Tumor
-0.1
963
Tumor
-0.1
982
Normal
-0.1
738
Normal
-0.1
392
Normal
-0.1
647
Tumor
-0.1
813
Tumor
-0.1
723
Tumor
-0.1
366
Normal
-0.1
376
Normal
-0.1
412
Normal
-0.1
1025
Tumor
-0.1
954
Normal
-0.1
426
Normal
-0.1
914
Normal
-0.1
221
Tumor
-0.1
214
Normal
-0.1
664
Normal
-0.1
666
Normal
-0.1
518
Normal
-0.1
285
Tumor
-0.1
126
Normal
-0.1
883
Tumor
-0.1
862
Normal
-0.1
461
Tumor
-0.1
965
Tumor
-0.1
746
Normal
-0.1
661
Tumor
-0.1
132
Normal
-0.1
528
Normal
-0.1
568
Normal
-0.1
448
Normal
-0.1
416
Normal
-0.1
966
Normal
-0.1
124
Normal
-0.1
331
Tumor
-0.1
514
Normal
-0.1
516
Normal
-0.1
162
Normal
-0.1
956
Normal
-0.1
271
Tumor
-0.1
497
Tumor
-0.1
567
Tumor
-0.1
364
Normal
-0.1
537
Tumor
-0.1
344
Normal
-0.1
267
Tumor
-0.1
952
Normal
-0.1
968
Normal
-0.1
394
Normal
-0.1
1014
Normal
-0.1
884
Normal
-0.1
385
Tumor
-0.1
111
Normal
-0.1
351
Tumor
-0.1
218
Normal
-0.2
258
Normal
-0.2
1046
Normal
-0.2
686
Normal
-0.2
618
Normal
-0.2
957
Tumor
-0.2
937
Tumor
-0.2
642
Normal
-0.2
524
Normal
-0.2
1022
Normal
-0.2
396
Normal
-0.2
114
Normal
-0.2
816
Normal
-0.2
534
Normal
-0.2
716
Normal
-0.2
125
Tumor
-0.2
866
Normal
-0.2
388
Normal
-0.2
698
Normal
-0.2
745
Tumor
-0.2
926
Normal
-0.2
341
Tumor
-0.2
924
Normal
-0.2
786
Normal
-0.2
958
Normal
-0.2
484
Normal
-0.2
513
Tumor
-0.2
756
Normal
-0.2
1026
Normal
-0.2
878
Normal
-0.2
222
Normal
-0.2
922
Normal
-0.2
332
Normal
-0.2
227
Tumor
-0.2
1044
Normal
-0.2
628
Normal
-0.2
493
Tumor
-0.2
1032
Normal
-0.3
714
Normal
-0.3
955
Tumor
-0.3
778
Normal
-0.3
196
Normal
-0.3
1027
Tumor
-0.3
131
Tumor
-0.3
912
Normal
-0.3
515
Tumor
-0.3
915
Tumor
-0.3
488
Normal
-0.3
393
Tumor
-0.3
354
Normal
-0.3
818
Normal
-0.3
573
Tumor
-0.3
314
Normal
-0.3
824
Normal
-0.3
472
Normal
-0.3
462
Normal
-0.3
983
Tumor
-0.3
858
Normal
-0.3
298
Normal
-0.3
465
Tumor
-0.4
953
Tumor
-0.4
636
Normal
-0.4
967
Tumor
-0.4
882
Normal
-0.4
964
Normal
-0.4
938
Normal
-0.4
744
Normal
-0.4
411
Tumor
-0.4
663
Tumor
-0.4
128
Normal
-0.4
867
Tumor
-0.4
391
Tumor
-0.4
1031
Tumor
-0.4
112
Tumor
-0.4
482
Normal
-0.4
523
Tumor
-0.4
358
Normal
-0.4
815
Tumor
-0.5
1043
Tumor
-0.5
481
Tumor
-0.5
127
Tumor
-0.5
431
Tumor
-0.6
695
Tumor
-0.6
357
Tumor
-0.6
352
Normal
-0.7
487
Tumor
-0.9
342
Normal
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
