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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACSL3 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
57.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
55.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
55.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
54.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
52.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
51.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
50.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
47.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
46.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
46.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
46.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
45.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
42.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
41.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
40.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
37.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
37.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
36.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
36.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
35.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
35.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
34.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
33.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
32.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
32.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
32.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
32.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
32.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
31.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
31.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
31.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
30.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
30.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
30.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
30.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
28.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
28.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
27.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
27.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
27.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
27.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
26.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
24.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
24.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
23.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
22.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
22.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
22.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
22.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
21.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
20.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
18.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
16.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
15.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACSL3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.8
Number of samples
231
Samples
Sample
Description
TPM
DO45239
0 years, male, NA, stage:2, alive, 870 days
162.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
97.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
71.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
67.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
63.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
59.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
58.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
57.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
55.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
52.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
46.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
46.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
45.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
44.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
44.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
42.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
41.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
40.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
40.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
39.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
39.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
38.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
37.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
37.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
36.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
36.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
36.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
36.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
35.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
35.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
35.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
35.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
33.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
33.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
33.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
33.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
32.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
32.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
32.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
31.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
30.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
30.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
29.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
29.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
27.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
27.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
26.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
25.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
24.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
23.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
23.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
20.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
1.6
135
Tumor
1.4
573
Tumor
1.3
463
Tumor
1.1
425
Tumor
1.1
285
Tumor
1.1
983
Tumor
1.1
567
Tumor
1.0
112
Tumor
1.0
343
Tumor
1.0
413
Tumor
1.0
517
Tumor
1.0
745
Tumor
1.0
443
Tumor
1.0
671
Tumor
0.9
1021
Tumor
0.9
363
Tumor
0.9
223
Tumor
0.8
815
Tumor
0.8
661
Tumor
0.8
367
Tumor
0.8
865
Tumor
0.8
743
Tumor
0.7
737
Tumor
0.7
635
Tumor
0.7
455
Tumor
0.6
171
Tumor
0.6
1025
Tumor
0.6
721
Tumor
0.6
385
Tumor
0.6
351
Tumor
0.6
497
Tumor
0.6
617
Tumor
0.5
421
Tumor
0.5
823
Tumor
0.5
851
Tumor
0.5
147
Tumor
0.5
431
Tumor
0.5
975
Tumor
0.5
951
Tumor
0.5
713
Tumor
0.4
191
Tumor
0.4
525
Tumor
0.4
813
Tumor
0.4
527
Tumor
0.4
857
Tumor
0.4
1043
Tumor
0.4
213
Tumor
0.4
937
Tumor
0.3
267
Tumor
0.3
391
Tumor
0.3
331
Tumor
0.3
863
Tumor
0.3
1015
Tumor
0.3
477
Tumor
0.3
883
Tumor
0.3
387
Tumor
0.2
195
Tumor
0.2
297
Tumor
0.2
313
Tumor
0.2
361
Tumor
0.2
451
Tumor
0.2
217
Tumor
0.2
523
Tumor
0.2
817
Tumor
0.2
724
Normal
0.2
977
Tumor
0.2
471
Tumor
0.2
231
Tumor
0.2
755
Tumor
0.2
537
Tumor
0.1
1027
Tumor
0.1
563
Tumor
0.1
665
Tumor
0.1
533
Tumor
0.1
943
Tumor
0.1
727
Tumor
0.1
963
Tumor
0.1
535
Tumor
0.1
145
Tumor
0.1
131
Tumor
0.1
923
Tumor
0.1
515
Tumor
0.1
452
Normal
0.1
221
Tumor
0.1
473
Tumor
0.1
277
Tumor
0.1
491
Tumor
0.1
557
Tumor
0.1
227
Tumor
0.1
925
Tumor
0.0
341
Tumor
0.0
685
Tumor
0.0
873
Tumor
0.0
663
Tumor
0.0
357
Tumor
0.0
435
Tumor
0.0
187
Tumor
0.0
113
Tumor
0.0
383
Tumor
0.0
125
Tumor
0.0
1031
Tumor
0.0
283
Tumor
0.0
466
Normal
0.0
461
Tumor
0.0
445
Tumor
0.0
447
Tumor
0.0
697
Tumor
0.0
123
Tumor
-0.1
553
Tumor
-0.1
814
Normal
-0.1
433
Tumor
-0.1
311
Tumor
-0.1
422
Normal
-0.1
467
Tumor
-0.1
228
Normal
-0.1
864
Normal
-0.1
468
Normal
-0.1
877
Tumor
-0.1
913
Tumor
-0.1
172
Normal
-0.1
353
Tumor
-0.1
141
Tumor
-0.1
915
Tumor
-0.1
342
Normal
-0.1
487
Tumor
-0.1
921
Tumor
-0.1
414
Normal
-0.1
358
Normal
-0.1
648
Normal
-0.2
286
Normal
-0.2
1041
Tumor
-0.2
136
Normal
-0.2
362
Normal
-0.2
272
Normal
-0.2
395
Tumor
-0.2
672
Normal
-0.2
464
Normal
-0.2
186
Normal
-0.2
723
Tumor
-0.2
434
Normal
-0.2
861
Tumor
-0.2
568
Normal
-0.2
132
Normal
-0.2
284
Normal
-0.2
262
Normal
-0.2
636
Normal
-0.2
258
Normal
-0.2
232
Normal
-0.2
368
Normal
-0.2
312
Normal
-0.2
127
Tumor
-0.2
278
Normal
-0.2
456
Normal
-0.2
426
Normal
-0.2
222
Normal
-0.2
526
Normal
-0.2
365
Tumor
-0.2
728
Normal
-0.2
124
Normal
-0.2
366
Normal
-0.2
436
Normal
-0.2
574
Normal
-0.2
424
Normal
-0.2
394
Normal
-0.2
196
Normal
-0.2
388
Normal
-0.2
188
Normal
-0.2
744
Normal
-0.2
738
Normal
-0.2
376
Normal
-0.3
428
Normal
-0.3
432
Normal
-0.3
662
Normal
-0.3
218
Normal
-0.3
558
Normal
-0.3
138
Normal
-0.3
392
Normal
-0.3
564
Normal
-0.3
866
Normal
-0.3
824
Normal
-0.3
742
Normal
-0.3
314
Normal
-0.3
647
Tumor
-0.3
224
Normal
-0.3
976
Normal
-0.3
862
Normal
-0.3
185
Tumor
-0.3
518
Normal
-0.3
344
Normal
-0.3
214
Normal
-0.3
257
Tumor
-0.3
514
Normal
-0.3
111
Normal
-0.3
352
Normal
-0.3
271
Tumor
-0.3
148
Normal
-0.3
462
Normal
-0.3
966
Normal
-0.3
882
Normal
-0.3
386
Normal
-0.3
538
Normal
-0.3
427
Tumor
-0.3
914
Normal
-0.3
957
Tumor
-0.3
777
Tumor
-0.3
696
Normal
-0.3
858
Normal
-0.3
516
Normal
-0.3
212
Normal
-0.3
298
Normal
-0.3
912
Normal
-0.3
524
Normal
-0.3
444
Normal
-0.3
483
Tumor
-0.3
354
Normal
-0.3
493
Tumor
-0.3
494
Normal
-0.3
756
Normal
-0.3
446
Normal
-0.3
545
Tumor
-0.3
664
Normal
-0.3
642
Normal
-0.3
162
Normal
-0.3
396
Normal
-0.3
465
Tumor
-0.3
1028
Normal
-0.3
128
Normal
-0.3
1016
Normal
-0.3
924
Normal
-0.3
881
Tumor
-0.3
641
Tumor
-0.3
955
Tumor
-0.3
375
Tumor
-0.4
142
Normal
-0.4
868
Normal
-0.4
356
Normal
-0.4
874
Normal
-0.4
332
Normal
-0.4
627
Tumor
-0.4
1032
Normal
-0.4
786
Normal
-0.4
954
Normal
-0.4
416
Normal
-0.4
572
Normal
-0.4
423
Tumor
-0.4
816
Normal
-0.4
918
Normal
-0.4
968
Normal
-0.4
137
Tumor
-0.4
114
Normal
-0.4
917
Tumor
-0.4
571
Tumor
-0.4
715
Tumor
-0.4
944
Normal
-0.4
852
Normal
-0.4
695
Tumor
-0.4
161
Tumor
-0.4
192
Normal
-0.4
474
Normal
-0.4
878
Normal
-0.4
666
Normal
-0.4
984
Normal
-0.4
618
Normal
-0.4
818
Normal
-0.4
268
Normal
-0.4
978
Normal
-0.4
355
Tumor
-0.4
1026
Normal
-0.4
448
Normal
-0.4
938
Normal
-0.4
126
Normal
-0.4
922
Normal
-0.4
956
Normal
-0.4
498
Normal
-0.4
327
Tumor
-0.4
746
Normal
-0.4
412
Normal
-0.5
415
Tumor
-0.5
1022
Normal
-0.5
1042
Normal
-0.5
884
Normal
-0.5
528
Normal
-0.5
964
Normal
-0.5
616
Normal
-0.5
722
Normal
-0.5
778
Normal
-0.5
926
Normal
-0.5
492
Normal
-0.5
628
Normal
-0.5
952
Normal
-0.5
958
Normal
-0.5
911
Tumor
-0.5
698
Normal
-0.5
328
Normal
-0.5
534
Normal
-0.5
384
Normal
-0.5
982
Normal
-0.5
714
Normal
-0.5
1044
Normal
-0.5
965
Tumor
-0.5
1014
Normal
-0.5
472
Normal
-0.5
488
Normal
-0.5
716
Normal
-0.5
146
Normal
-0.5
554
Normal
-0.5
482
Normal
-0.5
916
Normal
-0.5
211
Tumor
-0.5
546
Normal
-0.5
686
Normal
-0.6
364
Normal
-0.6
1013
Tumor
-0.6
478
Normal
-0.6
484
Normal
-0.6
513
Tumor
-0.6
261
Tumor
-0.6
481
Tumor
-0.6
867
Tumor
-0.6
1046
Normal
-0.6
393
Tumor
-0.7
615
Tumor
-0.7
785
Tumor
-0.7
1045
Tumor
-0.7
741
Tumor
-0.7
536
Normal
-0.7
411
Tumor
-0.9
953
Tumor
-0.9
981
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.