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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
C4BPB is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
272.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
998.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
916.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
916.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
910.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
827.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
761.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
747.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
746.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
740.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
740.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
691.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
682.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
677.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
672.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
658.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
657.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
652.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
644.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
633.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
631.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
627.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
618.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
610.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
607.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
585.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
583.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
581.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
580.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
576.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
574.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
573.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
565.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
538.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
537.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
534.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
526.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
524.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
516.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
516.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
497.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
494.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
490.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
485.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
484.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
480.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
474.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
469.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
468.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
466.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
463.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
460.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
459.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
450.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
448.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
448.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
447.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
445.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
445.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
433.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
432.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
432.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
429.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
426.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
425.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
424.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
421.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
419.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
419.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
416.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
410.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
409.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
402.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
397.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
394.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
394.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
394.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
394.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
390.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
389.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
386.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
383.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
383.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
383.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
378.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
376.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
373.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
369.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
368.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
363.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
354.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
354.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
346.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
345.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
344.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
343.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
342.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
341.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
340.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
337.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
337.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
330.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
330.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
330.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
329.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
329.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
329.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
328.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
325.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
324.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
324.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
323.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
320.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
317.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
315.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
314.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
313.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
313.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
308.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
308.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
308.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
306.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
305.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
302.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
301.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
300.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
299.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
299.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
298.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
298.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
295.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
295.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
295.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
294.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
294.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
293.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
291.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
288.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
288.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
288.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
286.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
286.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
285.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
285.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
284.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
282.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
279.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
278.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
278.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
276.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
276.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
276.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
272.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
267.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
266.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
266.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
264.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
262.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
260.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
258.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
257.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
257.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
256.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
254.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
254.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
253.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
252.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
250.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
250.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
249.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
247.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
247.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
246.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
246.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
245.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
244.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
242.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
241.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
241.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
240.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
239.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
238.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
236.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
236.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
235.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
234.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
233.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
233.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
233.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
228.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
225.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
225.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
224.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
223.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
223.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
221.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
220.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
219.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
219.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
219.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
219.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
218.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
218.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
217.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
216.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
210.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
208.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
208.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
207.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
206.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
206.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
204.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
203.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
203.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
203.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
203.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
202.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
199.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
198.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
198.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
197.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
196.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
194.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
193.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
193.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
193.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
190.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
189.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
188.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
187.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
186.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
185.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
185.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
185.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
184.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
184.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
184.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
183.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
183.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
181.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
180.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
179.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
178.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
178.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
178.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
178.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
175.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
174.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
172.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
172.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
171.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
169.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
168.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
164.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
164.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
161.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
161.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
160.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
159.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
159.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
156.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
156.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
154.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
154.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
153.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
152.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
152.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
152.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
152.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
150.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
150.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
149.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
149.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
148.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
147.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
143.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
143.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
142.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
142.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
142.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
141.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
139.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
138.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
135.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
134.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
131.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
129.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
127.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
127.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
126.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
123.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
123.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
122.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
122.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
120.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
119.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
117.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
117.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
116.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
115.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
115.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
111.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
110.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
109.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
108.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
108.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
107.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
106.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
104.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
104.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
103.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
102.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
95.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
94.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
91.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
89.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
88.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
88.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
85.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
82.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
81.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
81.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
78.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
75.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
72.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
72.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
71.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
70.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
70.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
67.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
66.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
61.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
58.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
57.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
57.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
56.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
55.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
55.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
55.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
51.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
44.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
44.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
42.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
41.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
36.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
35.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
31.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
25.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
C4BPB is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
266.6
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
762.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
760.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
752.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
708.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
661.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
661.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
648.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
632.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
631.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
624.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
617.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
593.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
559.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
532.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
526.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
524.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
518.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
517.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
515.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
511.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
507.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
504.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
493.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
492.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
488.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
484.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
480.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
476.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
469.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
466.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
462.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
456.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
453.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
447.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
446.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
443.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
443.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
440.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
439.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
436.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
436.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
434.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
424.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
418.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
405.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
404.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
403.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
401.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
398.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
394.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
394.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
377.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
374.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
373.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
372.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
372.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
371.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
366.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
365.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
365.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
364.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
359.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
356.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
356.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
354.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
352.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
349.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
347.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
338.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
337.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
336.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
333.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
332.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
332.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
331.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
328.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
328.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
327.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
325.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
325.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
323.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
321.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
320.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
320.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
319.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
315.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
312.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
309.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
308.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
307.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
306.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
305.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
298.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
292.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
292.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
285.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
283.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
278.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
276.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
276.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
275.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
275.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
272.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
269.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
267.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
266.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
255.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
255.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
250.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
249.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
249.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
247.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
246.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
246.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
243.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
243.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
239.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
238.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
238.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
237.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
233.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
233.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
232.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
230.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
228.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
225.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
225.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
222.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
221.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
220.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
218.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
216.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
215.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
213.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
213.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
211.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
207.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
204.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
203.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
203.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
202.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
202.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
201.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
201.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
200.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
197.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
195.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
191.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
188.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
187.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
187.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
186.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
184.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
181.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
178.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
177.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
175.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
174.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
172.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
172.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
170.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
170.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
166.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
165.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
164.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
163.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
163.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
158.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
152.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
147.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
147.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
144.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
142.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
140.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
137.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
135.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
134.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
130.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
128.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
128.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
127.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
127.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
126.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
125.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
124.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
119.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
114.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
112.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
111.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
109.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
106.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
103.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
94.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
86.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
85.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
85.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
81.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
81.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
80.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
77.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
75.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
75.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
71.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
64.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
60.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
59.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
59.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
57.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
57.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
53.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
50.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
48.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
38.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
36.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
31.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
28.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
697
Tumor
1.8
975
Tumor
1.4
527
Tumor
1.4
343
Tumor
1.4
823
Tumor
1.3
745
Tumor
1.3
963
Tumor
1.3
777
Tumor
1.3
445
Tumor
1.1
553
Tumor
1.0
713
Tumor
1.0
865
Tumor
0.9
721
Tumor
0.9
1021
Tumor
0.9
857
Tumor
0.9
328
Normal
0.8
877
Tumor
0.8
635
Tumor
0.8
533
Tumor
0.8
977
Tumor
0.8
557
Tumor
0.7
523
Tumor
0.7
921
Tumor
0.7
375
Tumor
0.7
1015
Tumor
0.7
135
Tumor
0.6
813
Tumor
0.6
863
Tumor
0.6
515
Tumor
0.6
1041
Tumor
0.6
715
Tumor
0.6
937
Tumor
0.5
981
Tumor
0.5
525
Tumor
0.5
778
Normal
0.4
477
Tumor
0.4
957
Tumor
0.4
125
Tumor
0.4
737
Tumor
0.4
327
Tumor
0.4
924
Normal
0.4
517
Tumor
0.4
137
Tumor
0.4
112
Tumor
0.4
685
Tumor
0.4
1027
Tumor
0.3
271
Tumor
0.3
393
Tumor
0.3
911
Tumor
0.3
483
Tumor
0.3
1025
Tumor
0.3
368
Normal
0.3
217
Tumor
0.3
433
Tumor
0.3
526
Normal
0.3
861
Tumor
0.3
491
Tumor
0.3
741
Tumor
0.2
488
Normal
0.2
536
Normal
0.2
967
Tumor
0.2
1028
Normal
0.2
171
Tumor
0.2
785
Tumor
0.2
147
Tumor
0.2
421
Tumor
0.2
223
Tumor
0.2
467
Tumor
0.2
342
Normal
0.2
497
Tumor
0.1
218
Normal
0.1
344
Normal
0.1
431
Tumor
0.1
696
Normal
0.1
722
Normal
0.1
474
Normal
0.1
816
Normal
0.1
461
Tumor
0.1
915
Tumor
0.1
228
Normal
0.1
286
Normal
0.1
744
Normal
0.1
518
Normal
0.1
554
Normal
0.1
493
Tumor
0.1
443
Tumor
0.1
513
Tumor
0.1
686
Normal
0.1
364
Normal
0.1
1031
Tumor
0.0
257
Tumor
0.0
538
Normal
0.0
913
Tumor
0.0
524
Normal
0.0
925
Tumor
0.0
964
Normal
0.0
471
Tumor
0.0
918
Normal
0.0
817
Tumor
0.0
131
Tumor
0.0
546
Normal
0.0
487
Tumor
0.0
494
Normal
0.0
746
Normal
0.0
195
Tumor
0.0
192
Normal
0.0
727
Tumor
-0.1
261
Tumor
-0.1
881
Tumor
-0.1
714
Normal
-0.1
221
Tumor
-0.1
161
Tumor
-0.1
1014
Normal
-0.1
952
Normal
-0.1
1022
Normal
-0.1
873
Tumor
-0.1
1026
Normal
-0.1
191
Tumor
-0.1
395
Tumor
-0.1
142
Normal
-0.1
358
Normal
-0.1
738
Normal
-0.1
196
Normal
-0.1
982
Normal
-0.1
492
Normal
-0.1
1045
Tumor
-0.1
922
Normal
-0.1
481
Tumor
-0.1
984
Normal
-0.1
498
Normal
-0.1
448
Normal
-0.1
213
Tumor
-0.2
724
Normal
-0.2
1016
Normal
-0.2
353
Tumor
-0.2
422
Normal
-0.2
917
Tumor
-0.2
123
Tumor
-0.2
361
Tumor
-0.2
926
Normal
-0.2
426
Normal
-0.2
214
Normal
-0.2
938
Normal
-0.2
484
Normal
-0.2
452
Normal
-0.2
914
Normal
-0.2
534
Normal
-0.2
113
Tumor
-0.2
728
Normal
-0.2
1043
Tumor
-0.2
283
Tumor
-0.2
124
Normal
-0.2
1042
Normal
-0.2
867
Tumor
-0.3
755
Tumor
-0.3
285
Tumor
-0.3
172
Normal
-0.3
966
Normal
-0.3
185
Tumor
-0.3
472
Normal
-0.3
528
Normal
-0.3
222
Normal
-0.3
468
Normal
-0.3
186
Normal
-0.3
968
Normal
-0.3
114
Normal
-0.3
883
Tumor
-0.3
573
Tumor
-0.3
148
Normal
-0.3
615
Tumor
-0.3
187
Tumor
-0.3
516
Normal
-0.3
352
Normal
-0.3
416
Normal
-0.3
111
Normal
-0.3
392
Normal
-0.3
396
Normal
-0.3
357
Tumor
-0.3
351
Tumor
-0.3
126
Normal
-0.3
162
Normal
-0.3
742
Normal
-0.3
428
Normal
-0.3
976
Normal
-0.4
723
Tumor
-0.4
451
Tumor
-0.4
514
Normal
-0.4
462
Normal
-0.4
923
Tumor
-0.4
916
Normal
-0.4
636
Normal
-0.4
232
Normal
-0.4
951
Tumor
-0.4
567
Tumor
-0.4
743
Tumor
-0.4
671
Tumor
-0.4
866
Normal
-0.4
464
Normal
-0.4
224
Normal
-0.4
268
Normal
-0.4
447
Tumor
-0.4
878
Normal
-0.4
356
Normal
-0.4
956
Normal
-0.4
953
Tumor
-0.4
756
Normal
-0.4
716
Normal
-0.4
354
Normal
-0.4
463
Tumor
-0.4
545
Tumor
-0.4
537
Tumor
-0.4
642
Normal
-0.4
455
Tumor
-0.4
568
Normal
-0.4
188
Normal
-0.4
341
Tumor
-0.5
267
Tumor
-0.5
618
Normal
-0.5
965
Tumor
-0.5
1044
Normal
-0.5
478
Normal
-0.5
387
Tumor
-0.5
482
Normal
-0.5
297
Tumor
-0.5
231
Tumor
-0.5
944
Normal
-0.5
446
Normal
-0.5
262
Normal
-0.5
473
Tumor
-0.5
386
Normal
-0.5
132
Normal
-0.5
128
Normal
-0.5
456
Normal
-0.5
376
Normal
-0.5
1013
Tumor
-0.5
858
Normal
-0.5
136
Normal
-0.5
412
Normal
-0.5
868
Normal
-0.5
1046
Normal
-0.5
627
Tumor
-0.5
414
Normal
-0.5
574
Normal
-0.5
814
Normal
-0.6
1032
Normal
-0.6
698
Normal
-0.6
365
Tumor
-0.6
695
Tumor
-0.6
874
Normal
-0.6
466
Normal
-0.6
436
Normal
-0.6
818
Normal
-0.6
978
Normal
-0.6
227
Tumor
-0.6
424
Normal
-0.6
331
Tumor
-0.6
141
Tumor
-0.6
955
Tumor
-0.6
212
Normal
-0.6
391
Tumor
-0.6
423
Tumor
-0.6
943
Tumor
-0.6
786
Normal
-0.7
366
Normal
-0.7
571
Tumor
-0.7
815
Tumor
-0.7
284
Normal
-0.7
355
Tumor
-0.7
958
Normal
-0.7
258
Normal
-0.7
394
Normal
-0.7
138
Normal
-0.7
145
Tumor
-0.7
672
Normal
-0.7
851
Tumor
-0.7
413
Tumor
-0.7
862
Normal
-0.7
864
Normal
-0.7
852
Normal
-0.7
383
Tumor
-0.7
665
Tumor
-0.7
388
Normal
-0.7
558
Normal
-0.7
824
Normal
-0.8
332
Normal
-0.8
564
Normal
-0.8
278
Normal
-0.8
882
Normal
-0.8
127
Tumor
-0.8
313
Tumor
-0.8
312
Normal
-0.8
434
Normal
-0.8
314
Normal
-0.8
272
Normal
-0.8
384
Normal
-0.8
465
Tumor
-0.8
298
Normal
-0.8
415
Tumor
-0.8
648
Normal
-0.8
363
Tumor
-0.9
535
Tumor
-0.9
628
Normal
-0.9
444
Normal
-0.9
572
Normal
-0.9
616
Normal
-0.9
146
Normal
-0.9
432
Normal
-0.9
983
Tumor
-0.9
662
Normal
-0.9
641
Tumor
-1.0
411
Tumor
-1.0
427
Tumor
-1.0
277
Tumor
-1.0
362
Normal
-1.0
666
Normal
-1.0
663
Tumor
-1.0
617
Tumor
-1.1
425
Tumor
-1.1
912
Normal
-1.1
954
Normal
-1.1
311
Tumor
-1.1
563
Tumor
-1.2
664
Normal
-1.2
884
Normal
-1.2
435
Tumor
-1.2
367
Tumor
-1.2
647
Tumor
-1.5
211
Tumor
-1.5
385
Tumor
-1.5
661
Tumor
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.