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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EXOSC9 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
79.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
45.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
38.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
31.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
28.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
27.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
24.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
24.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
23.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
20.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
19.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
17.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
16.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EXOSC9 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.8
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
43.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
29.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
28.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
27.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
24.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
20.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.0
395
Tumor
0.8
951
Tumor
0.8
413
Tumor
0.7
351
Tumor
0.6
937
Tumor
0.6
661
Tumor
0.6
535
Tumor
0.6
967
Tumor
0.6
285
Tumor
0.6
367
Tumor
0.5
141
Tumor
0.5
1031
Tumor
0.5
473
Tumor
0.5
467
Tumor
0.5
313
Tumor
0.4
161
Tumor
0.4
497
Tumor
0.4
865
Tumor
0.4
187
Tumor
0.4
983
Tumor
0.4
817
Tumor
0.4
685
Tumor
0.4
533
Tumor
0.4
387
Tumor
0.4
755
Tumor
0.4
815
Tumor
0.4
523
Tumor
0.4
923
Tumor
0.3
925
Tumor
0.3
327
Tumor
0.3
981
Tumor
0.3
883
Tumor
0.3
185
Tumor
0.3
211
Tumor
0.3
277
Tumor
0.3
557
Tumor
0.3
123
Tumor
0.3
1041
Tumor
0.3
957
Tumor
0.3
385
Tumor
0.3
427
Tumor
0.3
227
Tumor
0.3
1021
Tumor
0.3
423
Tumor
0.3
724
Normal
0.3
715
Tumor
0.2
353
Tumor
0.2
451
Tumor
0.2
647
Tumor
0.2
483
Tumor
0.2
113
Tumor
0.2
331
Tumor
0.2
411
Tumor
0.2
477
Tumor
0.2
283
Tumor
0.2
1013
Tumor
0.2
777
Tumor
0.2
537
Tumor
0.2
355
Tumor
0.2
881
Tumor
0.2
487
Tumor
0.2
112
Tumor
0.1
743
Tumor
0.1
465
Tumor
0.1
463
Tumor
0.1
383
Tumor
0.1
261
Tumor
0.1
663
Tumor
0.1
267
Tumor
0.1
363
Tumor
0.1
563
Tumor
0.1
1025
Tumor
0.1
813
Tumor
0.1
814
Normal
0.1
1015
Tumor
0.1
867
Tumor
0.1
131
Tumor
0.1
493
Tumor
0.1
471
Tumor
0.1
913
Tumor
0.1
357
Tumor
0.1
943
Tumor
0.1
741
Tumor
0.1
297
Tumor
0.1
341
Tumor
0.1
921
Tumor
0.1
746
Normal
0.1
527
Tumor
0.1
861
Tumor
0.1
431
Tumor
0.1
314
Normal
0.1
851
Tumor
0.1
415
Tumor
0.1
271
Tumor
0.0
311
Tumor
0.0
278
Normal
0.0
963
Tumor
0.0
664
Normal
0.0
955
Tumor
0.0
666
Normal
0.0
171
Tumor
0.0
361
Tumor
0.0
364
Normal
0.0
665
Tumor
0.0
142
Normal
0.0
672
Normal
0.0
137
Tumor
0.0
188
Normal
0.0
671
Tumor
0.0
977
Tumor
0.0
524
Normal
0.0
966
Normal
0.0
538
Normal
0.0
135
Tumor
0.0
911
Tumor
0.0
695
Tumor
0.0
558
Normal
0.0
223
Tumor
0.0
952
Normal
0.0
416
Normal
0.0
953
Tumor
0.0
492
Normal
0.0
221
Tumor
0.0
915
Tumor
0.0
525
Tumor
0.0
468
Normal
0.0
721
Tumor
0.0
823
Tumor
0.0
877
Tumor
0.0
727
Tumor
0.0
186
Normal
0.0
328
Normal
0.0
1028
Normal
0.0
857
Tumor
0.0
964
Normal
0.0
391
Tumor
0.0
464
Normal
0.0
444
Normal
0.0
778
Normal
-0.1
491
Tumor
-0.1
852
Normal
-0.1
147
Tumor
-0.1
567
Tumor
-0.1
785
Tumor
-0.1
513
Tumor
-0.1
452
Normal
-0.1
393
Tumor
-0.1
866
Normal
-0.1
412
Normal
-0.1
572
Normal
-0.1
136
Normal
-0.1
455
Tumor
-0.1
874
Normal
-0.1
365
Tumor
-0.1
312
Normal
-0.1
466
Normal
-0.1
213
Tumor
-0.1
571
Tumor
-0.1
124
Normal
-0.1
138
Normal
-0.1
515
Tumor
-0.1
436
Normal
-0.1
447
Tumor
-0.1
648
Normal
-0.1
924
Normal
-0.1
737
Tumor
-0.1
148
Normal
-0.1
873
Tumor
-0.1
574
Normal
-0.1
816
Normal
-0.1
343
Tumor
-0.1
916
Normal
-0.1
662
Normal
-0.1
462
Normal
-0.1
1027
Tumor
-0.1
786
Normal
-0.1
146
Normal
-0.1
298
Normal
-0.1
342
Normal
-0.1
433
Tumor
-0.1
564
Normal
-0.1
217
Tumor
-0.1
1026
Normal
-0.1
498
Normal
-0.1
432
Normal
-0.1
858
Normal
-0.1
352
Normal
-0.1
435
Tumor
-0.1
744
Normal
-0.1
286
Normal
-0.1
918
Normal
-0.1
356
Normal
-0.1
864
Normal
-0.1
268
Normal
-0.1
738
Normal
-0.1
545
Tumor
-0.1
824
Normal
-0.1
222
Normal
-0.1
488
Normal
-0.1
272
Normal
-0.1
697
Tumor
-0.1
332
Normal
-0.1
922
Normal
-0.1
818
Normal
-0.1
554
Normal
-0.1
926
Normal
-0.1
114
Normal
-0.1
1045
Tumor
-0.2
1032
Normal
-0.2
517
Tumor
-0.2
484
Normal
-0.2
878
Normal
-0.2
976
Normal
-0.2
162
Normal
-0.2
145
Tumor
-0.2
445
Tumor
-0.2
456
Normal
-0.2
362
Normal
-0.2
126
Normal
-0.2
756
Normal
-0.2
982
Normal
-0.2
722
Normal
-0.2
132
Normal
-0.2
344
Normal
-0.2
172
Normal
-0.2
1042
Normal
-0.2
232
Normal
-0.2
494
Normal
-0.2
461
Tumor
-0.2
912
Normal
-0.2
686
Normal
-0.2
358
Normal
-0.2
191
Tumor
-0.2
696
Normal
-0.2
742
Normal
-0.2
635
Tumor
-0.2
615
Tumor
-0.2
944
Normal
-0.2
111
Normal
-0.2
516
Normal
-0.2
228
Normal
-0.2
917
Tumor
-0.2
713
Tumor
-0.2
384
Normal
-0.2
284
Normal
-0.2
422
Normal
-0.2
474
Normal
-0.2
434
Normal
-0.2
192
Normal
-0.2
526
Normal
-0.2
723
Tumor
-0.2
1022
Normal
-0.2
863
Tumor
-0.2
354
Normal
-0.2
376
Normal
-0.2
224
Normal
-0.2
426
Normal
-0.2
368
Normal
-0.2
862
Normal
-0.2
518
Normal
-0.2
196
Normal
-0.2
546
Normal
-0.2
568
Normal
-0.2
642
Normal
-0.2
128
Normal
-0.2
868
Normal
-0.2
478
Normal
-0.2
534
Normal
-0.2
728
Normal
-0.2
125
Tumor
-0.2
482
Normal
-0.2
938
Normal
-0.3
472
Normal
-0.3
714
Normal
-0.3
954
Normal
-0.3
366
Normal
-0.3
425
Tumor
-0.3
956
Normal
-0.3
553
Tumor
-0.3
914
Normal
-0.3
617
Tumor
-0.3
882
Normal
-0.3
214
Normal
-0.3
262
Normal
-0.3
627
Tumor
-0.3
618
Normal
-0.3
514
Normal
-0.3
616
Normal
-0.3
212
Normal
-0.3
716
Normal
-0.3
958
Normal
-0.3
628
Normal
-0.3
446
Normal
-0.3
218
Normal
-0.3
1016
Normal
-0.3
884
Normal
-0.3
1043
Tumor
-0.3
698
Normal
-0.3
1014
Normal
-0.3
421
Tumor
-0.3
984
Normal
-0.3
636
Normal
-0.3
528
Normal
-0.3
975
Tumor
-0.3
573
Tumor
-0.3
641
Tumor
-0.3
745
Tumor
-0.3
386
Normal
-0.3
448
Normal
-0.3
428
Normal
-0.4
443
Tumor
-0.4
231
Tumor
-0.4
375
Tumor
-0.4
258
Normal
-0.4
968
Normal
-0.4
424
Normal
-0.4
195
Tumor
-0.4
414
Normal
-0.4
481
Tumor
-0.4
394
Normal
-0.4
536
Normal
-0.4
388
Normal
-0.4
978
Normal
-0.5
257
Tumor
-0.5
127
Tumor
-0.5
392
Normal
-0.5
396
Normal
-0.6
1046
Normal
-0.6
1044
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
