We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SARDH is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
151.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
137.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
132.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
114.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
111.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
107.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
106.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
104.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
104.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
99.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
98.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
97.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
89.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
86.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
86.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
85.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
84.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
79.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
78.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
78.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
77.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
77.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
76.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
75.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
75.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
72.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
70.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
67.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
67.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
67.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
66.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
66.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
65.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
65.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
65.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
65.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
65.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
64.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
64.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
64.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
62.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
62.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
62.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
62.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
62.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
61.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
61.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
61.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
60.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
59.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
59.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
58.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
58.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
57.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
57.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
55.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
55.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
55.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
55.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
54.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
54.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
53.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
53.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
53.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
53.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
53.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
52.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
52.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
52.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
51.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
51.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
51.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
50.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
50.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
50.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
50.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
49.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
49.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
49.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
49.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
48.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
48.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
48.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
48.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
48.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
48.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
47.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
47.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
47.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
46.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
46.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
46.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
45.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
45.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
45.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
45.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
45.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
44.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
44.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
44.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
44.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
43.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
43.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
43.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
42.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
42.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
41.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
41.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
41.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
41.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
41.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
40.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
40.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
40.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
39.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
39.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
39.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
39.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
39.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
39.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
38.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
38.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
38.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
38.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
38.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
38.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
38.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
38.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
37.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
37.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
37.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
37.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
37.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
37.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
37.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
37.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
36.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
36.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
36.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
36.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
35.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
35.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
35.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
35.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
35.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
35.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
35.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
35.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
35.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
35.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
35.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
35.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
35.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
35.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
35.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
35.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
35.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
34.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
34.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
34.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
33.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
33.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
33.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
33.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
33.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
32.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
32.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
32.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
32.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
32.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
32.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
32.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
31.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
31.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
31.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
31.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
31.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
31.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
30.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
30.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
30.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
30.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
30.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
30.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
30.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
30.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
29.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
29.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
29.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
29.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
29.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
29.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
28.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
28.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
28.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
28.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
28.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
28.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
27.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
27.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
27.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
27.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
27.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
27.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
27.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
26.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
26.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
26.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
25.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
25.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
25.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
25.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
25.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
25.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
25.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
25.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
24.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
24.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
24.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
24.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
24.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
24.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
24.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
24.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
23.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
23.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
23.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
22.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
21.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
21.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
21.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
19.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
19.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
18.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
18.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
18.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
16.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
4.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SARDH is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.1
Number of samples
231
Samples
Sample
Description
TPM
DO23534
0 years, male, NA, stage:2, alive, 840 days
88.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
76.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
67.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
67.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
62.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
60.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
56.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
55.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
55.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
54.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
53.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
52.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
51.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
50.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
50.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
48.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
48.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
47.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
46.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
45.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
44.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
44.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
43.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
43.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
42.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
42.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
42.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
41.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
41.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
41.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
40.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
40.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
40.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
40.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
39.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
38.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
38.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
38.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
37.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
36.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
36.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
35.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
35.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
35.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
35.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
35.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
35.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
35.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
34.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
34.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
34.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
34.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
34.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
33.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
33.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
33.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
33.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
33.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
32.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
32.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
32.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
31.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
30.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
30.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
29.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
29.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
29.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
28.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
28.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
28.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
28.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
27.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
26.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
26.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
25.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
25.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
25.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
24.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
24.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
24.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
24.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
24.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
23.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
23.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
23.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
22.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
21.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
20.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
19.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
18.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
17.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.7
862
Normal
1.1
746
Normal
1.1
1046
Normal
1.1
924
Normal
1.1
342
Normal
1.1
448
Normal
1.1
222
Normal
1.0
452
Normal
0.9
912
Normal
0.9
698
Normal
0.9
756
Normal
0.9
484
Normal
0.9
742
Normal
0.9
298
Normal
0.9
648
Normal
0.9
714
Normal
0.9
1022
Normal
0.9
436
Normal
0.9
426
Normal
0.9
435
Tumor
0.9
744
Normal
0.9
186
Normal
0.8
618
Normal
0.8
568
Normal
0.8
824
Normal
0.8
162
Normal
0.8
636
Normal
0.8
964
Normal
0.8
664
Normal
0.8
786
Normal
0.8
818
Normal
0.8
546
Normal
0.8
922
Normal
0.8
878
Normal
0.8
462
Normal
0.8
728
Normal
0.8
944
Normal
0.8
696
Normal
0.7
148
Normal
0.7
938
Normal
0.7
564
Normal
0.7
142
Normal
0.7
172
Normal
0.7
534
Normal
0.7
1014
Normal
0.7
278
Normal
0.7
864
Normal
0.7
914
Normal
0.7
616
Normal
0.7
858
Normal
0.7
358
Normal
0.7
465
Tumor
0.7
196
Normal
0.7
423
Tumor
0.7
882
Normal
0.7
376
Normal
0.7
1016
Normal
0.7
388
Normal
0.7
1026
Normal
0.6
488
Normal
0.6
414
Normal
0.6
954
Normal
0.6
666
Normal
0.6
114
Normal
0.6
1045
Tumor
0.6
428
Normal
0.6
132
Normal
0.6
723
Tumor
0.6
472
Normal
0.6
214
Normal
0.6
344
Normal
0.6
615
Tumor
0.6
528
Normal
0.5
866
Normal
0.5
466
Normal
0.5
494
Normal
0.5
982
Normal
0.5
332
Normal
0.5
228
Normal
0.5
518
Normal
0.5
232
Normal
0.5
464
Normal
0.5
446
Normal
0.5
1032
Normal
0.5
642
Normal
0.5
366
Normal
0.5
354
Normal
0.5
1041
Tumor
0.5
412
Normal
0.5
482
Normal
0.5
111
Normal
0.5
868
Normal
0.5
538
Normal
0.5
981
Tumor
0.5
1044
Normal
0.5
352
Normal
0.5
686
Normal
0.5
138
Normal
0.5
515
Tumor
0.4
146
Normal
0.4
816
Normal
0.4
127
Tumor
0.4
976
Normal
0.4
672
Normal
0.4
394
Normal
0.4
738
Normal
0.4
918
Normal
0.4
364
Normal
0.4
628
Normal
0.4
267
Tumor
0.4
432
Normal
0.4
456
Normal
0.4
662
Normal
0.4
468
Normal
0.4
572
Normal
0.4
341
Tumor
0.4
716
Normal
0.4
1042
Normal
0.4
284
Normal
0.4
984
Normal
0.4
314
Normal
0.4
396
Normal
0.4
424
Normal
0.4
474
Normal
0.4
722
Normal
0.3
958
Normal
0.3
926
Normal
0.3
272
Normal
0.3
112
Tumor
0.3
218
Normal
0.3
516
Normal
0.3
362
Normal
0.3
434
Normal
0.3
227
Tumor
0.3
952
Normal
0.3
392
Normal
0.3
554
Normal
0.3
328
Normal
0.3
874
Normal
0.3
911
Tumor
0.2
968
Normal
0.2
136
Normal
0.2
514
Normal
0.2
128
Normal
0.2
574
Normal
0.2
778
Normal
0.2
422
Normal
0.2
286
Normal
0.2
212
Normal
0.2
258
Normal
0.2
386
Normal
0.2
312
Normal
0.2
571
Tumor
0.2
444
Normal
0.1
916
Normal
0.1
368
Normal
0.1
483
Tumor
0.1
956
Normal
0.1
852
Normal
0.1
433
Tumor
0.1
526
Normal
0.1
558
Normal
0.1
966
Normal
0.1
361
Tumor
0.1
478
Normal
0.1
492
Normal
0.0
857
Tumor
0.0
498
Normal
0.0
224
Normal
0.0
262
Normal
0.0
978
Normal
0.0
477
Tumor
0.0
356
Normal
0.0
785
Tumor
0.0
188
Normal
0.0
513
Tumor
0.0
268
Normal
0.0
745
Tumor
0.0
873
Tumor
0.0
384
Normal
-0.1
1015
Tumor
-0.1
443
Tumor
-0.1
126
Normal
-0.1
665
Tumor
-0.1
1025
Tumor
-0.1
145
Tumor
-0.1
955
Tumor
-0.1
192
Normal
-0.1
915
Tumor
-0.1
461
Tumor
-0.2
937
Tumor
-0.2
113
Tumor
-0.2
641
Tumor
-0.2
221
Tumor
-0.2
365
Tumor
-0.2
741
Tumor
-0.2
963
Tumor
-0.3
271
Tumor
-0.3
695
Tumor
-0.3
867
Tumor
-0.3
416
Normal
-0.3
191
Tumor
-0.3
517
Tumor
-0.3
217
Tumor
-0.3
447
Tumor
-0.4
1028
Normal
-0.4
884
Normal
-0.4
861
Tumor
-0.4
635
Tumor
-0.4
137
Tumor
-0.4
261
Tumor
-0.4
863
Tumor
-0.4
524
Normal
-0.4
353
Tumor
-0.4
1043
Tumor
-0.5
721
Tumor
-0.5
563
Tumor
-0.5
473
Tumor
-0.5
617
Tumor
-0.5
411
Tumor
-0.5
737
Tumor
-0.5
195
Tumor
-0.5
185
Tumor
-0.5
445
Tumor
-0.6
777
Tumor
-0.6
923
Tumor
-0.6
161
Tumor
-0.6
823
Tumor
-0.6
1031
Tumor
-0.6
713
Tumor
-0.6
425
Tumor
-0.6
187
Tumor
-0.6
481
Tumor
-0.6
755
Tumor
-0.6
913
Tumor
-0.6
124
Normal
-0.6
536
Normal
-0.6
141
Tumor
-0.7
277
Tumor
-0.7
715
Tumor
-0.7
171
Tumor
-0.7
557
Tumor
-0.7
431
Tumor
-0.8
123
Tumor
-0.8
327
Tumor
-0.8
943
Tumor
-0.8
493
Tumor
-0.8
1013
Tumor
-0.8
223
Tumor
-0.8
297
Tumor
-0.9
363
Tumor
-0.9
977
Tumor
-0.9
451
Tumor
-0.9
471
Tumor
-0.9
147
Tumor
-0.9
231
Tumor
-1.0
135
Tumor
-1.0
671
Tumor
-1.0
497
Tumor
-1.0
553
Tumor
-1.0
491
Tumor
-1.0
917
Tumor
-1.0
975
Tumor
-1.1
1021
Tumor
-1.1
925
Tumor
-1.1
393
Tumor
-1.1
131
Tumor
-1.1
421
Tumor
-1.1
965
Tumor
-1.1
647
Tumor
-1.1
313
Tumor
-1.1
814
Normal
-1.2
213
Tumor
-1.2
383
Tumor
-1.2
487
Tumor
-1.2
367
Tumor
-1.2
865
Tumor
-1.2
413
Tumor
-1.2
415
Tumor
-1.3
357
Tumor
-1.3
983
Tumor
-1.3
525
Tumor
-1.3
463
Tumor
-1.3
881
Tumor
-1.3
743
Tumor
-1.3
537
Tumor
-1.3
467
Tumor
-1.3
331
Tumor
-1.4
343
Tumor
-1.4
257
Tumor
-1.4
663
Tumor
-1.4
953
Tumor
-1.4
387
Tumor
-1.5
817
Tumor
-1.5
697
Tumor
-1.5
125
Tumor
-1.5
533
Tumor
-1.5
727
Tumor
-1.5
951
Tumor
-1.5
527
Tumor
-1.5
355
Tumor
-1.6
427
Tumor
-1.6
685
Tumor
-1.6
877
Tumor
-1.6
351
Tumor
-1.6
567
Tumor
-1.6
813
Tumor
-1.6
921
Tumor
-1.6
573
Tumor
-1.6
545
Tumor
-1.7
391
Tumor
-1.7
967
Tumor
-1.7
724
Normal
-1.7
455
Tumor
-1.7
957
Tumor
-1.7
851
Tumor
-1.8
523
Tumor
-1.8
385
Tumor
-1.8
375
Tumor
-1.8
395
Tumor
-1.8
311
Tumor
-1.9
815
Tumor
-1.9
883
Tumor
-1.9
661
Tumor
-2.0
1027
Tumor
-2.1
283
Tumor
-2.1
285
Tumor
-2.1
211
Tumor
-2.2
535
Tumor
-2.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
