MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:66.3 nTPM
HPA Brain:93.2 nTPM
GTEx:66.3 nTPM
FANTOM5:93.6 Scaled Tags Per Million
Pig:52.4 nTPM
Mouse:22.3 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 93.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.5
2219 Male, age 76, both hemispheres 81.8
2666 Male, age 74, left hemisphere 70.9
1870 Female, age 42, unknown 69.7
2411 Female, age 72, unknown 68.1
1827 Male, age 72, unknown 62.5
2586 Male, age 75, left hemisphere 62.3
1830 Male, age 51, unknown 62.2
2828 Female, age 72, unknown 62.2
1833 Male, age 53, unknown 60.3
2019 Male, age 18, unknown 45.4
Dorsal raphe nucleus
nTPM: 72.3
2047 Male, age 72, unknown 87.0
1828 Male, age 53, unknown 75.3
2750 Male, age 76, both hemispheres 71.8
2298 Female, age 72, unknown 66.8
2016 Female, age 72, unknown 60.4
Inferior colliculus
nTPM: 57.4
2849 Male, age 72, unknown 61.8
1848 Female, age 42, unknown 58.1
1890 Male, age 53, unknown 55.0
2097 Female, age 72, unknown 54.8
Median raphe nucleus
nTPM: 83.9
2220 Male, age 76, midline 83.9
Periaquaductal grey, anterior
nTPM: 65.1
1947 Male, age 18, unknown 72.2
1795 Male, age 51, unknown 61.7
2502 Female, age 75, unknown 61.2
Periaquaductal grey, dorsal
nTPM: 56.7
1840 Male, age 53, unknown 63.7
2850 Male, age 76, both hemispheres 56.4
2464 Female, age 72, unknown 53.9
1831 Male, age 72, unknown 52.8
Periaquaductal grey, lateral
nTPM: 50.5
2053 Male, age 18, unknown 56.8
2140 Male, age 76, both hemispheres 49.3
2272 Male, age 74, both hemispheres 45.4
Pretectal area
nTPM: 53.4
2825 Male, age 18, unknown 68.6
2407 Male, age 75, both hemispheres 62.0
2224 Female, age 72, unknown 60.7
2667 Female, age 75, unknown 55.2
2316 Male, age 76, right hemisphere 51.3
1944 Female, age 72, unknown 49.7
2273 Male, age 74, both hemispheres 49.0
2007 Male, age 72, unknown 48.5
1815 Male, age 53, unknown 48.2
1816 Male, age 51, unknown 47.4
1817 Female, age 42, unknown 46.6
Red nucleus
nTPM: 63.2
1821 Female, age 72, unknown 76.8
2725 Female, age 75, unknown 73.3
2588 Male, age 74, left hemisphere 71.9
2584 Male, age 75, left hemisphere 68.4
1954 Female, age 42, unknown 62.8
1865 Male, age 51, unknown 62.1
1904 Male, age 53, unknown 60.7
2503 Female, age 72, unknown 60.5
2227 Male, age 72, unknown 59.7
2769 Male, age 72, unknown 58.6
2823 Male, age 76, right hemisphere 55.8
2785 Male, age 18, unknown 47.4
Substantia nigra
nTPM: 93.2
1916 Female, age 42, unknown 145.4
2241 Male, age 72, unknown 119.1
2699 Male, age 18, unknown 115.7
1851 Male, age 51, unknown 110.1
1941 Male, age 53, unknown 103.3
2409 Female, age 72, unknown 78.2
1889 Female, age 72, unknown 67.1
2665 Male, age 74, both hemispheres 66.5
2583 Male, age 75, right hemisphere 64.7
2590 Female, age 75, unknown 62.0
Superior colliculus
nTPM: 55.8
2668 Female, age 75, unknown 69.2
1796 Male, age 53, unknown 63.1
2664 Male, age 75, both hemispheres 62.6
2587 Male, age 74, left hemisphere 59.7
1895 Male, age 76, right hemisphere 57.1
1839 Male, age 51, unknown 57.0
1913 Female, age 42, unknown 50.4
2261 Male, age 18, unknown 48.5
2087 Female, age 72, unknown 47.9
1995 Male, age 72, unknown 42.3
Ventral tegmental area
nTPM: 86.6
1915 Female, age 42, unknown 102.0
2218 Male, age 76, both hemispheres 96.4
2223 Female, age 72, unknown 89.3
1942 Male, age 51, unknown 82.0
2410 Female, age 72, unknown 80.9
2021 Male, age 53, unknown 69.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 66.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.3
Samples: 139

Max nTPM: 144.6
Min nTPM: 30.2
Std nTPM: 19.2
Median nTPM: 64.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 144.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 131.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 121.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 120.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 109.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 107.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 103.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 96.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 95.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 94.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 91.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 93.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.6
FF:10158-103A5 76 years, female 93.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 52.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.4
Samples: 4

Max nTPM: 66.8
Min nTPM: 39.4
Sample A Female 66.8
Sample B Female 42.0
Sample C Male 61.3
Sample D Male 39.4
Midbrain
nTPM: 42.8
Samples: 4

Max nTPM: 48.2
Min nTPM: 35.2
Sample A Female 48.2
Sample B Female 43.4
Sample C Male 35.2
Sample D Male 44.2
Periaqueductal gray
nTPM: 33.8
Samples: 3

Max nTPM: 39.4
Min nTPM: 29.6
Sample B Female 32.4
Sample C Male 39.4
Sample D Male 29.6
Superior colliculi
nTPM: 40.3
Samples: 4

Max nTPM: 50.7
Min nTPM: 28.3
Sample A Female 50.7
Sample B Female 28.3
Sample C Male 39.1
Sample D Male 42.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 24.0
Min nTPM: 20.8
Sample A Male 23.0
Sample B Male 24.0
Sample C Female 21.5
Sample D Female 20.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
2453 Antisense, RP_Baylor_103278, Mouse strain C57BL/6J (56 days, male) 1.5
2452 Antisense, RP_Baylor_103278, Mouse strain C57BL/6J (56 days, male) 0.4

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