MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:104.7 nTPM
HPA Brain:104.4 nTPM
GTEx:104.7 nTPM
FANTOM5:34.2 Scaled Tags Per Million
Pig:50.2 nTPM
Mouse:23.8 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 104.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.7
2586 Male, age 75, left hemisphere 122.8
2019 Male, age 18, unknown 99.9
2828 Female, age 72, unknown 92.7
2411 Female, age 72, unknown 90.6
2666 Male, age 74, left hemisphere 89.6
1827 Male, age 72, unknown 87.9
1830 Male, age 51, unknown 86.6
1833 Male, age 53, unknown 86.1
1870 Female, age 42, unknown 82.8
2219 Male, age 76, both hemispheres 58.1
Dorsal raphe nucleus
nTPM: 68.7
2750 Male, age 76, both hemispheres 85.7
1828 Male, age 53, unknown 70.5
2016 Female, age 72, unknown 64.9
2047 Male, age 72, unknown 63.0
2298 Female, age 72, unknown 59.2
Inferior colliculus
nTPM: 67.8
1848 Female, age 42, unknown 74.3
1890 Male, age 53, unknown 69.3
2849 Male, age 72, unknown 67.6
2097 Female, age 72, unknown 60.0
Median raphe nucleus
nTPM: 57.1
2220 Male, age 76, midline 57.1
Periaquaductal grey, anterior
nTPM: 73.0
1795 Male, age 51, unknown 73.6
1947 Male, age 18, unknown 73.0
2502 Female, age 75, unknown 72.5
Periaquaductal grey, dorsal
nTPM: 56.8
2464 Female, age 72, unknown 66.9
1831 Male, age 72, unknown 66.0
1840 Male, age 53, unknown 47.8
2850 Male, age 76, both hemispheres 46.5
Periaquaductal grey, lateral
nTPM: 52.6
2053 Male, age 18, unknown 57.9
2272 Male, age 74, both hemispheres 55.0
2140 Male, age 76, both hemispheres 45.0
Pretectal area
nTPM: 74.3
2007 Male, age 72, unknown 98.2
1817 Female, age 42, unknown 94.1
1815 Male, age 53, unknown 87.7
1816 Male, age 51, unknown 84.7
1944 Female, age 72, unknown 75.6
2667 Female, age 75, unknown 69.6
2407 Male, age 75, both hemispheres 68.5
2825 Male, age 18, unknown 67.2
2316 Male, age 76, right hemisphere 66.8
2273 Male, age 74, both hemispheres 53.2
2224 Female, age 72, unknown 52.3
Red nucleus
nTPM: 104.4
2588 Male, age 74, left hemisphere 117.3
2823 Male, age 76, right hemisphere 115.2
2785 Male, age 18, unknown 113.3
1821 Female, age 72, unknown 107.4
1865 Male, age 51, unknown 106.5
2769 Male, age 72, unknown 106.3
1904 Male, age 53, unknown 103.4
1954 Female, age 42, unknown 100.6
2227 Male, age 72, unknown 98.2
2584 Male, age 75, left hemisphere 97.8
2503 Female, age 72, unknown 94.8
2725 Female, age 75, unknown 92.3
Substantia nigra
nTPM: 80.2
2583 Male, age 75, right hemisphere 105.5
1916 Female, age 42, unknown 86.8
1941 Male, age 53, unknown 85.9
1851 Male, age 51, unknown 84.0
1889 Female, age 72, unknown 82.5
2665 Male, age 74, both hemispheres 81.0
2590 Female, age 75, unknown 77.0
2409 Female, age 72, unknown 75.7
2699 Male, age 18, unknown 66.6
2241 Male, age 72, unknown 56.6
Superior colliculus
nTPM: 81.0
2668 Female, age 75, unknown 98.9
1796 Male, age 53, unknown 85.7
2664 Male, age 75, both hemispheres 84.1
1895 Male, age 76, right hemisphere 81.5
1913 Female, age 42, unknown 80.3
1995 Male, age 72, unknown 80.3
2587 Male, age 74, left hemisphere 79.7
2261 Male, age 18, unknown 76.5
2087 Female, age 72, unknown 71.7
1839 Male, age 51, unknown 71.1
Ventral tegmental area
nTPM: 74.5
2223 Female, age 72, unknown 88.3
2410 Female, age 72, unknown 82.4
1915 Female, age 42, unknown 75.3
2218 Male, age 76, both hemispheres 72.9
1942 Male, age 51, unknown 67.4
2021 Male, age 53, unknown 60.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 104.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 104.7
Samples: 139

Max nTPM: 230.0
Min nTPM: 48.9
Std nTPM: 25.1
Median nTPM: 102.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 230.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 199.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 191.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 156.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 154.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 148.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 146.0
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 141.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 140.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 139.1
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 138.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 34.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.2
FF:10158-103A5 76 years, female 34.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 50.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.6
Samples: 4

Max nTPM: 53.5
Min nTPM: 33.6
Sample A Female 53.5
Sample B Female 33.6
Sample C Male 47.7
Sample D Male 47.6
Midbrain
nTPM: 50.2
Samples: 4

Max nTPM: 66.3
Min nTPM: 43.5
Sample A Female 66.3
Sample B Female 45.7
Sample C Male 45.3
Sample D Male 43.5
Periaqueductal gray
nTPM: 35.4
Samples: 3

Max nTPM: 37.2
Min nTPM: 32.4
Sample B Female 37.2
Sample C Male 36.7
Sample D Male 32.4
Superior colliculi
nTPM: 48.9
Samples: 4

Max nTPM: 56.0
Min nTPM: 39.0
Sample A Female 56.0
Sample B Female 39.0
Sample C Male 48.0
Sample D Male 52.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 23.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.8
Samples: 4

Max nTPM: 27.6
Min nTPM: 20.1
Sample A Male 27.6
Sample B Male 20.1
Sample C Female 21.9
Sample D Female 25.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
67755429 Antisense, RP_040922_01_C06, Mouse strain C57BL/6J (56 days, male) 2.4
68196959 Antisense, RP_040922_01_C06, Mouse strain C57BL/6J (56 days, male) 0.2

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